Wall clock time and date at job start Tue Mar 31 2020 05:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47375 * 2 1 4 4 C 1.37095 * 120.00273 * 263.16837 * 3 2 1 5 5 H 1.07997 * 120.00369 * 196.66876 * 4 3 2 6 6 C 1.38957 * 119.99491 * 16.67598 * 4 3 2 7 7 N 1.31406 * 120.00285 * 18.77328 * 6 4 3 8 8 Si 1.86809 * 119.99691 * 198.77487 * 6 4 3 9 9 H 1.48501 * 109.46767 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.46762 * 119.99723 * 8 6 4 11 11 H 1.48494 * 109.47030 * 239.99919 * 8 6 4 12 12 C 1.34781 * 119.99833 * 83.17117 * 3 2 1 13 13 O 1.21291 * 120.00004 * 5.71910 * 12 3 2 14 14 C 1.50701 * 119.99960 * 185.72375 * 12 3 2 15 15 H 1.08998 * 109.47195 * 47.42964 * 14 12 3 16 16 C 1.52998 * 109.47100 * 287.43742 * 14 12 3 17 17 O 1.42892 * 109.47363 * 167.43155 * 14 12 3 18 18 C 1.35945 * 117.00077 * 203.16014 * 17 14 12 19 19 C 1.38702 * 120.03266 * 356.60673 * 18 17 14 20 20 C 1.38153 * 119.97148 * 180.29427 * 19 18 17 21 21 C 1.38452 * 120.02805 * 359.45154 * 20 19 18 22 22 F 1.35104 * 119.97122 * 180.27148 * 21 20 19 23 23 C 1.38458 * 120.06160 * 0.25297 * 21 20 19 24 24 C 1.38149 * 120.03073 * 0.02562 * 23 21 20 25 25 H 1.08995 * 109.47285 * 301.22519 * 1 2 3 26 26 H 1.09008 * 109.46859 * 61.22369 * 1 2 3 27 27 H 1.09002 * 109.47308 * 181.22225 * 1 2 3 28 28 H 1.09005 * 109.47091 * 239.99884 * 2 1 3 29 29 H 1.09004 * 109.46964 * 120.00125 * 2 1 3 30 30 H 0.97000 * 119.99946 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47312 * 174.41853 * 16 14 12 32 32 H 1.09001 * 109.46787 * 294.41443 * 16 14 12 33 33 H 1.09000 * 109.47483 * 54.40988 * 16 14 12 34 34 H 1.07999 * 120.01721 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.98519 * 179.72482 * 20 19 18 36 36 H 1.08000 * 119.98339 * 180.02562 * 23 21 20 37 37 H 1.08001 * 120.01800 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3801 1.9804 -1.1788 5 1 2.9821 2.8769 -1.1664 6 6 1.9719 1.4342 -2.3896 7 7 0.9640 0.5917 -2.4239 8 14 2.8561 1.8976 -3.9686 9 1 3.9473 2.8568 -3.6615 10 1 3.4294 0.6775 -4.5912 11 1 1.8939 2.5274 -4.9081 12 6 2.1122 2.0627 1.1590 13 8 1.8920 1.5021 2.2118 14 6 2.4905 3.5214 1.1468 15 1 1.8957 4.0448 0.3982 16 6 3.9756 3.6603 0.8061 17 8 2.2420 4.0888 2.4345 18 6 2.0573 5.4344 2.4908 19 6 2.1838 6.2012 1.3419 20 6 2.0018 7.5694 1.4018 21 6 1.6821 8.1738 2.6057 22 9 1.4990 9.5112 2.6619 23 6 1.5495 7.4088 3.7522 24 6 1.7367 6.0412 3.6963 25 1 -0.3633 0.5327 0.8787 26 1 -0.3633 0.4948 -0.9008 27 1 -0.3634 -1.0274 0.0219 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.6789 0.2108 -3.2692 31 1 4.2269 4.7156 0.6997 32 1 4.5741 3.2231 1.6054 33 1 4.1839 3.1410 -0.1294 34 1 2.4287 5.7295 0.4018 35 1 2.1046 8.1672 0.5083 36 1 1.2998 7.8816 4.6906 37 1 1.6328 5.4447 4.5906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231548.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:06 Heat of formation + Delta-G solvation = -75.300242 kcal Electronic energy + Delta-G solvation = -22196.884799 eV Core-core repulsion = 18662.084837 eV Total energy + Delta-G solvation = -3534.799962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.75835 -40.18434 -38.62802 -36.87467 -35.03120 -32.12826 -31.60571 -30.97159 -29.41455 -28.87946 -25.18403 -24.05304 -23.19757 -22.38404 -21.22003 -19.23986 -18.18761 -17.65917 -17.11753 -16.17783 -15.83650 -15.55590 -15.11977 -14.65707 -14.58038 -14.30103 -13.83435 -13.61112 -13.51643 -13.03929 -12.89112 -12.55381 -12.46036 -12.18083 -12.00441 -11.62301 -11.44816 -11.23688 -11.13783 -10.83269 -10.71349 -10.45222 -10.38545 -10.23253 -9.73259 -9.14586 -9.08355 -8.46195 -7.91514 -7.85144 -6.48204 -4.08719 1.20464 1.31055 2.97955 3.10904 3.13156 3.27835 3.65199 3.73581 3.96162 4.36581 4.68484 4.78463 4.85014 4.88496 5.14090 5.33617 5.46548 5.55428 5.60294 5.78295 5.90953 6.05749 6.14266 6.18026 6.23182 6.36658 6.50189 6.51333 6.68510 6.78742 6.80312 6.96789 7.18935 7.29535 7.61452 7.65489 7.78368 8.31219 8.92002 9.36189 9.76981 10.46542 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.004907 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.344736 B = 5705.020293 C = 6547.567768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.142 3.858 3 N -0.433 5.433 4 C -0.350 4.350 5 H 0.105 0.895 6 C 0.040 3.960 7 N -0.852 5.852 8 Si 0.918 3.082 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.280 1.280 12 C 0.460 3.540 13 O -0.589 6.589 14 C 0.082 3.918 15 H 0.093 0.907 16 C -0.181 4.181 17 O -0.283 6.283 18 C 0.137 3.863 19 C -0.187 4.187 20 C -0.110 4.110 21 C 0.043 3.957 22 F -0.147 7.147 23 C -0.113 4.113 24 C -0.130 4.130 25 H 0.025 0.975 26 H 0.099 0.901 27 H 0.033 0.967 28 H 0.088 0.912 29 H 0.038 0.962 30 H 0.270 0.730 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.479 9.341 3.029 10.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.020 3.980 3 N -0.152 5.152 4 C -0.478 4.478 5 H 0.122 0.878 6 C -0.165 4.165 7 N -0.490 5.490 8 Si 0.744 3.256 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.206 1.206 12 C 0.247 3.753 13 O -0.474 6.474 14 C 0.022 3.978 15 H 0.111 0.889 16 C -0.238 4.238 17 O -0.195 6.195 18 C 0.090 3.910 19 C -0.205 4.205 20 C -0.129 4.129 21 C 0.024 3.976 22 F -0.126 7.126 23 C -0.132 4.132 24 C -0.149 4.149 25 H 0.044 0.956 26 H 0.117 0.883 27 H 0.052 0.948 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.161 0.839 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.252 8.799 3.530 9.744 hybrid contribution 0.316 0.524 -1.211 1.357 sum 2.567 9.323 2.318 9.944 Atomic orbital electron populations 1.22177 0.96562 0.99569 1.02559 1.21065 0.94612 0.82427 0.99927 1.43659 1.55309 1.11261 1.04953 1.19910 1.32171 1.12805 0.82865 0.87753 1.25294 0.94983 0.96796 0.99475 1.70066 1.21956 1.29988 1.26944 0.86014 0.79507 0.78689 0.81383 1.19190 1.20364 1.20626 1.19428 0.84268 0.86881 0.84705 1.90564 1.56198 1.69696 1.30990 1.22151 0.97587 0.94988 0.83029 0.88932 1.22454 0.94568 1.02414 1.04368 1.86235 1.84473 1.16818 1.31964 1.19213 0.93998 0.83867 0.93939 1.21324 1.06457 0.93739 0.99005 1.20912 1.00192 0.94891 0.96875 1.17532 1.07562 0.77374 0.95130 1.91458 1.93493 1.30437 1.97219 1.20882 1.01330 0.93272 0.97722 1.20299 1.03975 0.93554 0.97054 0.95610 0.88268 0.94840 0.89399 0.94315 0.91951 0.92211 0.91579 0.88391 0.83857 0.84702 0.84426 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.68 37.16 0.36 -3.09 16 2 C 0.14 3.39 5.27 -4.04 -0.02 3.37 16 3 N -0.43 -10.47 2.64 -114.81 -0.30 -10.77 16 4 C -0.35 -8.12 8.44 -14.93 -0.13 -8.25 16 5 H 0.11 2.21 4.67 -52.49 -0.25 1.97 16 6 C 0.04 0.93 4.95 -17.47 -0.09 0.84 16 7 N -0.85 -20.32 8.30 55.50 0.46 -19.86 16 8 Si 0.92 17.87 29.59 -169.99 -5.03 12.84 16 9 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 10 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 11 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 12 C 0.46 11.11 6.94 -10.98 -0.08 11.04 16 13 O -0.59 -16.01 16.21 -14.04 -0.23 -16.24 16 14 C 0.08 1.61 1.83 -27.88 -0.05 1.56 16 15 H 0.09 1.76 5.90 -51.93 -0.31 1.46 16 16 C -0.18 -3.05 8.80 37.16 0.33 -2.72 16 17 O -0.28 -5.57 9.37 -39.15 -0.37 -5.94 16 18 C 0.14 2.23 6.58 -39.23 -0.26 1.97 16 19 C -0.19 -2.70 8.24 -39.44 -0.32 -3.03 16 20 C -0.11 -1.43 10.02 -39.53 -0.40 -1.82 16 21 C 0.04 0.57 7.30 -39.42 -0.29 0.28 16 22 F -0.15 -1.95 17.27 2.25 0.04 -1.92 16 23 C -0.11 -1.41 10.02 -39.53 -0.40 -1.80 16 24 C -0.13 -1.83 9.99 -39.44 -0.39 -2.23 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.10 2.42 5.82 -51.92 -0.30 2.12 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 2.13 6.22 -51.93 -0.32 1.80 16 29 H 0.04 0.92 7.56 -51.93 -0.39 0.53 16 30 H 0.27 6.09 8.31 -40.82 -0.34 5.75 16 31 H 0.06 0.85 6.80 -51.93 -0.35 0.49 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.10 1.69 5.48 -51.93 -0.28 1.41 16 34 H 0.14 1.99 5.35 -52.49 -0.28 1.71 16 35 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 307.48 15.07 4.63 4.63 Total: -1.00 -27.61 307.48 -6.69 -34.30 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.16 Total: 6.84 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -1.73 Total: -3.88 kcal Atomic # 7 Polarization: -30.79 SS G_CDS: 0.16 Total: -30.63 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.59 Total: -22.18 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.61 -6.69 -34.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231548.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.004 kcal (2) G-P(sol) polarization free energy of solvation -27.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds