Wall clock time and date at job start Tue Mar 31 2020 05:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47550 * 2 1 4 4 C 1.37100 * 120.00113 * 264.77398 * 3 2 1 5 5 H 1.08000 * 119.99909 * 138.84812 * 4 3 2 6 6 C 1.38950 * 119.99792 * 318.84886 * 4 3 2 7 7 N 1.31402 * 120.00346 * 341.82880 * 6 4 3 8 8 Si 1.86801 * 119.99748 * 161.82761 * 6 4 3 9 9 H 1.48507 * 109.46936 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47076 * 120.00164 * 8 6 4 11 11 H 1.48493 * 109.47195 * 240.00064 * 8 6 4 12 12 C 1.34782 * 119.99753 * 84.76827 * 3 2 1 13 13 O 1.21285 * 119.99693 * 180.02562 * 12 3 2 14 14 C 1.50699 * 119.99797 * 0.02562 * 12 3 2 15 15 C 1.53001 * 109.46858 * 179.97438 * 14 12 3 16 16 O 1.42898 * 109.47174 * 179.97438 * 15 14 12 17 17 C 1.35945 * 117.00081 * 180.02562 * 16 15 14 18 18 C 1.38701 * 120.03156 * 0.27930 * 17 16 15 19 19 C 1.38150 * 119.97015 * 180.24989 * 18 17 16 20 20 C 1.38456 * 120.03218 * 359.46970 * 19 18 17 21 21 F 1.35095 * 119.97157 * 180.29893 * 20 19 18 22 22 C 1.38454 * 120.05352 * 0.27976 * 20 19 18 23 23 C 1.38149 * 120.03542 * 359.97438 * 22 20 19 24 24 H 1.08998 * 109.47176 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46876 * 299.99588 * 1 2 3 26 26 H 1.08998 * 109.46830 * 59.99500 * 1 2 3 27 27 H 1.09002 * 109.46698 * 239.99887 * 2 1 3 28 28 H 1.09000 * 109.47251 * 120.00815 * 2 1 3 29 29 H 0.97003 * 120.00547 * 179.97438 * 7 6 4 30 30 H 1.09007 * 109.47337 * 59.99996 * 14 12 3 31 31 H 1.08997 * 109.47285 * 300.00086 * 14 12 3 32 32 H 1.09002 * 109.46648 * 60.00595 * 15 14 12 33 33 H 1.08997 * 109.47674 * 300.00375 * 15 14 12 34 34 H 1.08005 * 120.01228 * 0.02562 * 18 17 16 35 35 H 1.08004 * 119.98257 * 179.75111 * 19 18 17 36 36 H 1.08009 * 119.97949 * 180.02562 * 22 20 19 37 37 H 1.08000 * 120.01183 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3490 1.9914 -1.1824 5 1 2.0744 3.0218 -1.3534 6 6 3.0372 1.2841 -2.1606 7 7 3.6791 0.1818 -1.8453 8 14 3.0498 1.9005 -3.9239 9 1 2.2584 3.1537 -4.0159 10 1 4.4487 2.1669 -4.3451 11 1 2.4530 0.8711 -4.8123 12 6 2.1428 2.0519 1.1624 13 8 2.5467 3.1956 1.1624 14 6 1.7799 1.3809 2.4621 15 6 2.0119 2.3535 3.6202 16 8 1.6672 1.7175 4.8526 17 6 1.8159 2.4502 5.9880 18 6 2.2784 3.7558 5.9160 19 6 2.4339 4.4976 7.0710 20 6 2.1181 3.9419 8.2992 21 9 2.2649 4.6703 9.4274 22 6 1.6514 2.6404 8.3720 23 6 1.4999 1.8946 7.2190 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 4.1593 -0.3122 -2.5282 30 1 2.4020 0.4966 2.6005 31 1 0.7306 1.0870 2.4386 32 1 1.3900 3.2379 3.4820 33 1 3.0613 2.6471 3.6435 34 1 2.5202 4.1912 4.9576 35 1 2.7978 5.5129 7.0156 36 1 1.4050 2.2082 9.3307 37 1 1.1355 0.8796 7.2762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068240781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:51 Heat of formation + Delta-G solvation = -94.863394 kcal Electronic energy + Delta-G solvation = -21196.798685 eV Core-core repulsion = 17661.150402 eV Total energy + Delta-G solvation = -3535.648284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.91043 -40.12660 -38.67912 -37.20974 -35.08077 -32.34910 -31.56807 -31.06741 -29.49631 -29.08326 -25.63657 -24.01275 -22.85010 -22.29810 -21.69740 -18.91781 -18.30057 -17.46070 -16.80856 -16.59849 -16.14852 -15.74900 -15.58467 -15.01999 -14.72131 -14.31509 -14.05393 -14.01198 -13.72011 -13.13114 -13.00504 -12.81745 -12.62876 -12.49173 -11.90233 -11.82994 -11.47606 -11.33007 -11.12036 -11.01865 -10.73201 -10.59872 -10.37791 -10.30911 -10.11282 -9.32242 -8.98449 -8.53448 -8.15598 -7.49907 -6.37798 -4.06907 1.02989 1.11965 3.11745 3.12845 3.23834 3.30202 3.46759 3.82196 4.13238 4.20302 4.57441 4.65221 4.85059 4.97278 5.01347 5.13212 5.28276 5.30117 5.45163 5.60612 5.72056 5.78272 5.92563 5.99190 6.03535 6.04821 6.12155 6.17829 6.22368 6.33874 6.49150 6.61635 6.82637 7.16878 7.38071 7.53350 8.23155 8.43524 9.11737 9.32248 9.92447 10.67322 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037252 B = 0.003106 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.456924 B = 9013.988607 C = 9488.163756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.101 3.899 3 N -0.437 5.437 4 C -0.311 4.311 5 H 0.089 0.911 6 C 0.039 3.961 7 N -0.870 5.870 8 Si 0.919 3.081 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.465 3.535 13 O -0.584 6.584 14 C -0.134 4.134 15 C 0.077 3.923 16 O -0.315 6.315 17 C 0.132 3.868 18 C -0.181 4.181 19 C -0.111 4.111 20 C 0.048 3.952 21 F -0.145 7.145 22 C -0.115 4.115 23 C -0.130 4.130 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.104 0.896 28 H 0.050 0.950 29 H 0.268 0.732 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.002 -0.034 14.190 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.023 4.023 3 N -0.156 5.156 4 C -0.439 4.439 5 H 0.107 0.893 6 C -0.165 4.165 7 N -0.507 5.507 8 Si 0.745 3.255 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.253 3.747 13 O -0.469 6.469 14 C -0.175 4.175 15 C 0.002 3.998 16 O -0.228 6.228 17 C 0.086 3.914 18 C -0.199 4.199 19 C -0.129 4.129 20 C 0.029 3.971 21 F -0.124 7.124 22 C -0.134 4.134 23 C -0.148 4.148 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.122 0.878 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.162 0.838 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.748 0.202 14.059 14.841 hybrid contribution 0.193 0.359 -0.770 0.871 sum -4.555 0.561 13.289 14.059 Atomic orbital electron populations 1.22223 0.98083 1.00505 1.01573 1.21500 0.91722 0.85465 1.03637 1.43429 1.55645 1.11794 1.04689 1.19430 1.35037 0.98638 0.90757 0.89303 1.25440 0.93954 0.96502 1.00650 1.69926 1.29327 1.17494 1.33999 0.85998 0.78186 0.79053 0.82257 1.19147 1.20706 1.20571 1.20021 0.82285 0.87888 0.84540 1.90527 1.50660 1.18753 1.86927 1.21536 1.03798 0.99530 0.92613 1.22595 1.01285 0.95968 0.79953 1.86029 1.81774 1.41494 1.13542 1.19072 0.94975 0.90248 0.87111 1.21322 1.04708 0.94114 0.99802 1.20960 1.00407 1.00931 0.90644 1.17563 1.06222 0.90961 0.82335 1.91470 1.94039 1.77239 1.49664 1.20905 1.00524 0.92629 0.99316 1.20288 1.04335 1.01263 0.88935 0.92971 0.93799 0.92376 0.87798 0.93142 0.92226 0.89005 0.89285 0.91170 0.91019 0.83844 0.84547 0.84300 0.84178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 10.15 37.16 0.38 -2.46 16 2 C 0.10 2.10 5.41 -4.04 -0.02 2.08 16 3 N -0.44 -10.71 2.50 -114.81 -0.29 -10.99 16 4 C -0.31 -8.41 8.84 -14.93 -0.13 -8.55 16 5 H 0.09 2.52 7.82 -52.49 -0.41 2.11 16 6 C 0.04 1.02 4.95 -17.47 -0.09 0.93 16 7 N -0.87 -23.05 11.61 55.50 0.64 -22.41 16 8 Si 0.92 20.22 29.59 -169.99 -5.03 15.19 16 9 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 C 0.46 10.89 7.59 -10.98 -0.08 10.81 16 13 O -0.58 -15.58 15.89 5.55 0.09 -15.49 16 14 C -0.13 -2.39 4.68 -27.88 -0.13 -2.52 16 15 C 0.08 1.24 4.03 37.16 0.15 1.39 16 16 O -0.31 -4.67 10.14 -19.57 -0.20 -4.87 16 17 C 0.13 1.76 6.69 -39.24 -0.26 1.50 16 18 C -0.18 -2.29 9.04 -39.44 -0.36 -2.65 16 19 C -0.11 -1.28 10.02 -39.53 -0.40 -1.67 16 20 C 0.05 0.56 7.30 -39.42 -0.29 0.27 16 21 F -0.15 -1.74 17.27 2.25 0.04 -1.70 16 22 C -0.11 -1.19 10.02 -39.53 -0.40 -1.59 16 23 C -0.13 -1.45 9.98 -39.44 -0.39 -1.85 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.70 6.60 -51.93 -0.34 0.36 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.10 2.41 5.76 -51.93 -0.30 2.11 16 28 H 0.05 0.95 6.66 -51.93 -0.35 0.61 16 29 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 30 H 0.09 1.55 7.41 -51.92 -0.38 1.17 16 31 H 0.09 1.42 6.54 -51.93 -0.34 1.08 16 32 H 0.07 1.13 7.60 -51.93 -0.39 0.74 16 33 H 0.07 1.20 7.63 -51.93 -0.40 0.80 16 34 H 0.14 1.81 6.30 -52.48 -0.33 1.48 16 35 H 0.14 1.32 8.06 -52.48 -0.42 0.89 16 36 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 318.10 15.07 4.79 4.79 Total: -1.00 -29.99 318.10 -6.46 -36.45 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -4.49 Total: 3.32 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -2.02 Total: -4.29 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.36 Total: -33.40 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.11 Total: -20.36 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.99 -6.46 -36.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.411 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds