Wall clock time and date at job start Tue Mar 31 2020 05:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47760 * 2 1 4 4 C 1.36933 * 120.00363 * 272.94838 * 3 2 1 5 5 H 1.08000 * 120.00039 * 176.30340 * 4 3 2 6 6 C 1.38810 * 119.99727 * 356.30701 * 4 3 2 7 7 N 1.31623 * 120.00282 * 30.18649 * 6 4 3 8 8 Si 1.86803 * 119.99856 * 210.18623 * 6 4 3 9 9 H 1.48502 * 109.47128 * 84.99065 * 8 6 4 10 10 H 1.48500 * 109.47200 * 204.99623 * 8 6 4 11 11 H 1.48502 * 109.46862 * 324.99085 * 8 6 4 12 12 C 1.46504 * 119.99813 * 92.94421 * 3 2 1 13 13 C 1.50694 * 109.47316 * 270.00680 * 12 3 2 14 14 C 1.38273 * 119.90443 * 270.02021 * 13 12 3 15 15 C 1.38205 * 120.16673 * 179.72395 * 14 13 12 16 16 C 1.38786 * 119.97089 * 0.52567 * 15 14 13 17 17 S 1.76202 * 120.09062 * 179.74576 * 16 15 14 18 18 C 1.81399 * 103.00096 * 359.73041 * 17 16 15 19 19 C 1.39369 * 119.81248 * 359.47793 * 16 15 14 20 20 O 1.36007 * 120.07758 * 180.22542 * 19 16 15 21 21 C 1.42906 * 116.99580 * 179.97438 * 20 19 16 22 22 C 1.38303 * 119.91094 * 89.99739 * 13 12 3 23 23 H 1.08994 * 109.47404 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46820 * 300.00197 * 1 2 3 25 25 H 1.09003 * 109.47024 * 59.99659 * 1 2 3 26 26 H 1.09005 * 109.47118 * 239.99709 * 2 1 3 27 27 H 1.09003 * 109.47024 * 120.00341 * 2 1 3 28 28 H 0.97001 * 119.99678 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46976 * 150.00124 * 12 3 2 30 30 H 1.09000 * 109.46953 * 30.00762 * 12 3 2 31 31 H 1.07998 * 119.91431 * 0.02562 * 14 13 12 32 32 H 1.08001 * 120.01331 * 180.26052 * 15 14 13 33 33 H 1.09001 * 109.47192 * 299.99300 * 18 17 16 34 34 H 1.08993 * 109.47183 * 59.99894 * 18 17 16 35 35 H 1.09004 * 109.46965 * 179.97438 * 18 17 16 36 36 H 1.09008 * 109.47052 * 60.00444 * 21 20 19 37 37 H 1.09001 * 109.47384 * 179.97438 * 21 20 19 38 38 H 1.08992 * 109.47223 * 300.00480 * 21 20 19 39 39 H 1.08000 * 119.98488 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1893 2.0470 -1.1843 5 1 2.4920 3.0837 -1.1821 6 6 1.9732 1.3895 -2.3875 7 7 1.0903 0.4158 -2.4562 8 14 2.9356 1.8868 -3.9094 9 1 4.2420 1.1807 -3.9216 10 1 2.1640 1.5212 -5.1244 11 1 3.1659 3.3537 -3.8921 12 6 2.3241 2.0499 1.2671 13 6 1.0912 2.7523 1.7747 14 6 0.8440 4.0624 1.4080 15 6 -0.2880 4.7098 1.8657 16 6 -1.1739 4.0480 2.7043 17 16 -2.6146 4.8727 3.2951 18 6 -2.4774 6.5198 2.5477 19 6 -0.9237 2.7276 3.0733 20 8 -1.7907 2.0724 3.8911 21 6 -1.4703 0.7208 4.2268 22 6 0.2099 2.0845 2.6055 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.9397 -0.0438 -3.2971 29 1 3.1192 2.7790 1.1106 30 1 2.6484 1.3104 1.9993 31 1 1.5347 4.5794 0.7584 32 1 -0.4808 5.7318 1.5744 33 1 -1.5556 6.9953 2.8829 34 1 -2.4640 6.4261 1.4619 35 1 -3.3305 7.1278 2.8491 36 1 -0.5074 0.6916 4.7371 37 1 -2.2411 0.3168 4.8831 38 1 -1.4174 0.1231 3.3169 39 1 0.4062 1.0613 2.8898 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068815613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:20 Heat of formation + Delta-G solvation = 20.281045 kcal Electronic energy + Delta-G solvation = -20417.068159 eV Core-core repulsion = 17452.626089 eV Total energy + Delta-G solvation = -2964.442070 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.75848 -37.42106 -35.76035 -32.24268 -30.54647 -30.09593 -29.10149 -28.72984 -27.05019 -25.62139 -23.31483 -21.78290 -21.36587 -20.17683 -17.82464 -16.78013 -16.58076 -15.75041 -15.50949 -14.98847 -14.78194 -14.17745 -13.75905 -13.67860 -13.62515 -13.47697 -13.18247 -12.48984 -12.33383 -12.01317 -11.92575 -11.72960 -11.53867 -11.15335 -10.95819 -10.86098 -10.71547 -10.48912 -10.38490 -9.98556 -9.93431 -9.82239 -9.45512 -9.03242 -8.26083 -8.03127 -7.07372 -6.85606 -5.83851 -3.04903 1.64085 1.77717 1.87734 2.69132 3.38392 3.46776 3.47496 3.52379 4.10922 4.51743 5.09003 5.10902 5.11232 5.20577 5.26460 5.34191 5.51361 5.54997 5.60166 5.62466 5.71193 5.74673 5.93225 6.12182 6.31392 6.52752 6.54654 6.57235 6.72941 6.93529 7.04942 7.12755 7.18201 7.23448 7.66133 7.68041 7.78550 8.13716 8.29135 9.19351 9.82012 10.26205 11.19848 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.005417 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.084715 B = 5167.237190 C = 5927.609370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.163 3.837 3 N -0.586 5.586 4 C -0.251 4.251 5 H 0.077 0.923 6 C 0.003 3.997 7 N -0.886 5.886 8 Si 0.889 3.111 9 H -0.288 1.288 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.181 3.819 13 C -0.042 4.042 14 C -0.122 4.122 15 C -0.097 4.097 16 C -0.136 4.136 17 S -0.115 6.115 18 C -0.148 4.148 19 C 0.141 3.859 20 O -0.314 6.314 21 C 0.029 3.971 22 C -0.179 4.179 23 H 0.016 0.984 24 H 0.017 0.983 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.004 0.996 28 H 0.252 0.748 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.758 5.263 11.738 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.038 3.962 3 N -0.306 5.306 4 C -0.379 4.379 5 H 0.095 0.905 6 C -0.195 4.195 7 N -0.531 5.531 8 Si 0.719 3.281 9 H -0.215 1.215 10 H -0.221 1.221 11 H -0.208 1.208 12 C 0.053 3.947 13 C -0.049 4.049 14 C -0.143 4.143 15 C -0.121 4.121 16 C -0.249 4.249 17 S 0.125 5.875 18 C -0.316 4.316 19 C 0.091 3.909 20 O -0.228 6.228 21 C -0.066 4.066 22 C -0.200 4.200 23 H 0.035 0.965 24 H 0.036 0.964 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.022 0.978 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.897 4.888 12.364 14.168 hybrid contribution 1.335 0.461 -1.857 2.333 sum -3.562 5.349 10.507 12.317 Atomic orbital electron populations 1.22377 0.99180 0.97945 1.01481 1.21050 0.92643 0.84274 0.98189 1.44502 1.75372 1.10496 1.00237 1.19245 1.39531 0.95963 0.83200 0.90501 1.24716 0.98710 0.98685 0.97349 1.70272 1.30545 1.27044 1.25237 0.86473 0.80819 0.77973 0.82820 1.21541 1.22071 1.20755 1.19916 0.91576 0.94899 0.88267 1.21110 0.99298 0.93062 0.91386 1.20808 0.97597 0.95028 1.00876 1.20876 0.94547 0.99267 0.97381 1.20638 1.01209 0.95377 1.07631 1.85348 1.28641 1.09621 1.63925 1.23636 1.06045 0.97506 1.04461 1.18297 0.89859 0.90357 0.92396 1.86069 1.46968 1.26664 1.63058 1.23013 1.01755 0.81120 1.00756 1.20936 0.95512 1.00313 1.03279 0.96536 0.96434 0.89342 0.89310 0.97791 0.93728 0.92248 0.93268 0.85995 0.86114 0.90149 0.89999 0.87972 0.92877 0.88645 0.92437 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.68 37.16 0.36 -3.16 16 2 C 0.16 3.85 5.71 -4.05 -0.02 3.82 16 3 N -0.59 -13.93 2.52 -174.61 -0.44 -14.37 16 4 C -0.25 -6.55 9.67 -15.06 -0.15 -6.70 16 5 H 0.08 1.97 7.99 -52.49 -0.42 1.55 16 6 C 0.00 0.08 4.97 -17.43 -0.09 -0.01 16 7 N -0.89 -24.39 8.38 55.49 0.46 -23.92 16 8 Si 0.89 21.12 29.65 -169.99 -5.04 16.08 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.18 3.56 5.83 -5.19 -0.03 3.53 16 13 C -0.04 -0.81 5.42 -104.59 -0.57 -1.37 16 14 C -0.12 -2.23 9.69 -39.58 -0.38 -2.61 16 15 C -0.10 -1.63 9.36 -39.39 -0.37 -2.00 16 16 C -0.14 -2.36 6.12 -38.96 -0.24 -2.60 16 17 S -0.11 -1.72 22.05 -107.50 -2.37 -4.09 16 18 C -0.15 -1.60 9.15 101.05 0.92 -0.68 16 19 C 0.14 2.53 6.69 -39.07 -0.26 2.26 16 20 O -0.31 -5.21 9.87 -19.76 -0.20 -5.40 16 21 C 0.03 0.36 9.81 101.05 0.99 1.35 16 22 C -0.18 -3.23 6.67 -39.47 -0.26 -3.49 16 23 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.02 0.38 5.70 -51.93 -0.30 0.08 16 25 H 0.09 2.39 6.30 -51.93 -0.33 2.07 16 26 H 0.09 2.34 5.82 -51.93 -0.30 2.03 16 27 H 0.00 0.08 7.86 -51.93 -0.41 -0.33 16 28 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.06 1.12 7.98 -51.93 -0.41 0.70 16 30 H 0.05 0.88 7.81 -51.93 -0.41 0.48 16 31 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.12 1.71 5.88 -52.49 -0.31 1.40 16 33 H 0.08 0.80 7.76 -51.92 -0.40 0.39 16 34 H 0.08 0.89 7.74 -51.93 -0.40 0.49 16 35 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 36 H 0.05 0.60 7.66 -51.92 -0.40 0.20 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.75 7.66 -51.93 -0.40 0.35 16 39 H 0.13 2.10 6.14 -52.49 -0.32 1.78 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -29.20 325.65 -8.39 -37.59 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.63 Total: 0.86 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -0.09 Total: -11.65 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.03 Total: -38.29 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.20 Total: -5.40 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.04 Total: 16.08 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.37 Total: -4.09 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.20 -8.39 -37.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068815613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.870 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds