Wall clock time and date at job start Tue Mar 31 2020 05:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47760 * 2 1 4 4 C 1.36933 * 120.00363 * 272.94838 * 3 2 1 5 5 H 1.08000 * 120.00039 * 176.30340 * 4 3 2 6 6 C 1.38810 * 119.99727 * 356.30701 * 4 3 2 7 7 N 1.31623 * 120.00282 * 30.18649 * 6 4 3 8 8 Si 1.86803 * 119.99856 * 210.18623 * 6 4 3 9 9 H 1.48502 * 109.47128 * 84.99065 * 8 6 4 10 10 H 1.48500 * 109.47200 * 204.99623 * 8 6 4 11 11 H 1.48502 * 109.46862 * 324.99085 * 8 6 4 12 12 C 1.46504 * 119.99813 * 92.94421 * 3 2 1 13 13 C 1.50694 * 109.47316 * 270.00680 * 12 3 2 14 14 C 1.38273 * 119.90443 * 270.02021 * 13 12 3 15 15 C 1.38205 * 120.16673 * 179.72395 * 14 13 12 16 16 C 1.38786 * 119.97089 * 0.52567 * 15 14 13 17 17 S 1.76202 * 120.09062 * 179.74576 * 16 15 14 18 18 C 1.81399 * 103.00096 * 359.73041 * 17 16 15 19 19 C 1.39369 * 119.81248 * 359.47793 * 16 15 14 20 20 O 1.36007 * 120.07758 * 180.22542 * 19 16 15 21 21 C 1.42906 * 116.99580 * 179.97438 * 20 19 16 22 22 C 1.38303 * 119.91094 * 89.99739 * 13 12 3 23 23 H 1.08994 * 109.47404 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46820 * 300.00197 * 1 2 3 25 25 H 1.09003 * 109.47024 * 59.99659 * 1 2 3 26 26 H 1.09005 * 109.47118 * 239.99709 * 2 1 3 27 27 H 1.09003 * 109.47024 * 120.00341 * 2 1 3 28 28 H 0.97001 * 119.99678 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46976 * 150.00124 * 12 3 2 30 30 H 1.09000 * 109.46953 * 30.00762 * 12 3 2 31 31 H 1.07998 * 119.91431 * 0.02562 * 14 13 12 32 32 H 1.08001 * 120.01331 * 180.26052 * 15 14 13 33 33 H 1.09001 * 109.47192 * 299.99300 * 18 17 16 34 34 H 1.08993 * 109.47183 * 59.99894 * 18 17 16 35 35 H 1.09004 * 109.46965 * 179.97438 * 18 17 16 36 36 H 1.09008 * 109.47052 * 60.00444 * 21 20 19 37 37 H 1.09001 * 109.47384 * 179.97438 * 21 20 19 38 38 H 1.08992 * 109.47223 * 300.00480 * 21 20 19 39 39 H 1.08000 * 119.98488 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1893 2.0470 -1.1843 5 1 2.4920 3.0837 -1.1821 6 6 1.9732 1.3895 -2.3875 7 7 1.0903 0.4158 -2.4562 8 14 2.9356 1.8868 -3.9094 9 1 4.2420 1.1807 -3.9216 10 1 2.1640 1.5212 -5.1244 11 1 3.1659 3.3537 -3.8921 12 6 2.3241 2.0499 1.2671 13 6 1.0912 2.7523 1.7747 14 6 0.8440 4.0624 1.4080 15 6 -0.2880 4.7098 1.8657 16 6 -1.1739 4.0480 2.7043 17 16 -2.6146 4.8727 3.2951 18 6 -2.4774 6.5198 2.5477 19 6 -0.9237 2.7276 3.0733 20 8 -1.7907 2.0724 3.8911 21 6 -1.4703 0.7208 4.2268 22 6 0.2099 2.0845 2.6055 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.9397 -0.0438 -3.2971 29 1 3.1192 2.7790 1.1106 30 1 2.6484 1.3104 1.9993 31 1 1.5347 4.5794 0.7584 32 1 -0.4808 5.7318 1.5744 33 1 -1.5556 6.9953 2.8829 34 1 -2.4640 6.4261 1.4619 35 1 -3.3305 7.1278 2.8491 36 1 -0.5074 0.6916 4.7371 37 1 -2.2411 0.3168 4.8831 38 1 -1.4174 0.1231 3.3169 39 1 0.4062 1.0613 2.8898 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068815613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:19 Heat of formation + Delta-G solvation = 5.550041 kcal Electronic energy + Delta-G solvation = -20417.706944 eV Core-core repulsion = 17452.626089 eV Total energy + Delta-G solvation = -2965.080854 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.05634 -38.81200 -37.43642 -33.90602 -32.27140 -31.47965 -30.70918 -29.70106 -28.26157 -27.22476 -25.10952 -23.08322 -22.95661 -21.87091 -19.10077 -18.58537 -17.90512 -17.14202 -16.85358 -16.63335 -16.00368 -15.58631 -15.35458 -15.29876 -14.81356 -14.63250 -14.57025 -13.87105 -13.75101 -13.51969 -13.29364 -13.25351 -12.95112 -12.78554 -12.67801 -12.44167 -12.27338 -12.04383 -11.84081 -11.77419 -11.65236 -11.34220 -11.09060 -10.46132 -10.17117 -9.36843 -8.91907 -8.13241 -7.82062 -5.03805 0.27781 0.51355 0.66781 1.48959 1.53947 1.58692 1.59814 2.37074 2.53660 2.77575 3.26064 3.82055 3.86124 4.01327 4.23178 4.29186 4.30977 4.37162 4.39033 4.39322 4.55264 4.68228 4.71946 4.73862 4.87235 4.90012 5.03104 5.09420 5.19711 5.20730 5.26617 5.38890 5.66465 5.79286 5.84170 5.85041 6.17611 6.34552 6.40780 7.22876 7.94144 8.34209 9.20115 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.005417 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.084715 B = 5167.237190 C = 5927.609370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.167 3.833 3 N -0.600 5.600 4 C -0.252 4.252 5 H 0.077 0.923 6 C -0.046 4.046 7 N -0.910 5.910 8 Si 0.945 3.055 9 H -0.290 1.290 10 H -0.303 1.303 11 H -0.275 1.275 12 C 0.181 3.819 13 C -0.058 4.058 14 C -0.136 4.136 15 C -0.098 4.098 16 C -0.146 4.146 17 S -0.138 6.138 18 C -0.139 4.139 19 C 0.129 3.871 20 O -0.326 6.326 21 C 0.021 3.979 22 C -0.183 4.183 23 H 0.027 0.973 24 H 0.026 0.974 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.028 0.972 28 H 0.245 0.755 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.146 0.854 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.065 0.935 37 H 0.124 0.876 38 H 0.050 0.950 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.024 6.398 12.980 15.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.042 3.958 3 N -0.321 5.321 4 C -0.382 4.382 5 H 0.095 0.905 6 C -0.241 4.241 7 N -0.557 5.557 8 Si 0.775 3.225 9 H -0.218 1.218 10 H -0.231 1.231 11 H -0.200 1.200 12 C 0.054 3.946 13 C -0.064 4.064 14 C -0.157 4.157 15 C -0.121 4.121 16 C -0.259 4.259 17 S 0.102 5.898 18 C -0.307 4.307 19 C 0.079 3.921 20 O -0.240 6.240 21 C -0.073 4.073 22 C -0.204 4.204 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.164 0.836 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.146 0.854 36 H 0.084 0.916 37 H 0.142 0.858 38 H 0.069 0.931 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.159 6.047 13.646 15.792 hybrid contribution 1.342 0.189 -2.086 2.487 sum -3.818 6.236 11.560 13.678 Atomic orbital electron populations 1.22162 0.99165 0.98153 0.99890 1.20887 0.92571 0.84493 0.97834 1.44566 1.75739 1.10721 1.01057 1.19456 1.38487 0.95960 0.84249 0.90527 1.25290 0.99672 0.99535 0.99595 1.70427 1.31705 1.28409 1.25112 0.85598 0.79210 0.77812 0.79896 1.21752 1.23077 1.20034 1.20021 0.92062 0.95403 0.87070 1.20999 0.98949 0.93721 0.92684 1.20967 0.98388 0.95145 1.01180 1.21144 0.93816 1.00357 0.96769 1.21004 1.01993 0.95697 1.07186 1.85391 1.27529 1.12507 1.64376 1.23760 1.07942 0.94745 1.04264 1.18507 0.90039 0.90922 0.92649 1.86064 1.46932 1.28327 1.62632 1.23292 1.03660 0.79278 1.01075 1.21024 0.95481 1.00692 1.03157 0.95410 0.95501 0.93170 0.92306 0.95327 0.94582 0.91695 0.91450 0.85828 0.83597 0.88846 0.89752 0.85378 0.91606 0.85779 0.93131 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 9.68 71.98 0.70 -5.57 16 2 C 0.17 7.84 5.71 86.38 0.49 8.33 16 3 N -0.60 -28.27 2.52 -706.35 -1.78 -30.04 16 4 C -0.25 -13.16 9.67 84.03 0.81 -12.34 16 5 H 0.08 3.91 7.99 -2.91 -0.02 3.89 16 6 C -0.05 -2.47 4.97 84.86 0.42 -2.05 16 7 N -0.91 -51.15 8.38 21.65 0.18 -50.97 16 8 Si 0.94 43.98 29.65 68.60 2.03 46.01 16 9 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 10 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 C 0.18 6.91 5.83 85.63 0.50 7.41 16 13 C -0.06 -2.14 5.42 -19.84 -0.11 -2.25 16 14 C -0.14 -4.82 9.69 22.27 0.22 -4.61 16 15 C -0.10 -3.12 9.36 22.39 0.21 -2.91 16 16 C -0.15 -4.88 6.12 22.67 0.14 -4.74 16 17 S -0.14 -3.87 22.05 -56.49 -1.25 -5.11 16 18 C -0.14 -2.58 9.15 113.37 1.04 -1.54 16 19 C 0.13 4.48 6.69 22.60 0.15 4.63 16 20 O -0.33 -10.35 9.87 -93.64 -0.92 -11.28 16 21 C 0.02 0.49 9.81 113.37 1.11 1.61 16 22 C -0.18 -6.37 6.67 22.34 0.15 -6.22 16 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.03 1.16 5.70 -2.39 -0.01 1.14 16 25 H 0.05 2.75 6.30 -2.39 -0.02 2.73 16 26 H 0.06 3.13 5.82 -2.38 -0.01 3.12 16 27 H 0.03 1.18 7.86 -2.39 -0.02 1.16 16 28 H 0.24 13.58 8.31 -92.71 -0.77 12.81 16 29 H 0.06 2.38 7.98 -2.39 -0.02 2.36 16 30 H 0.07 2.30 7.81 -2.39 -0.02 2.28 16 31 H 0.12 4.23 8.06 -2.91 -0.02 4.20 16 32 H 0.15 3.77 5.88 -2.91 -0.02 3.75 16 33 H 0.09 1.53 7.76 -2.39 -0.02 1.51 16 34 H 0.08 1.57 7.74 -2.39 -0.02 1.55 16 35 H 0.13 1.74 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.35 7.66 -2.38 -0.02 1.33 16 37 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.05 1.24 7.66 -2.39 -0.02 1.22 16 39 H 0.13 4.29 6.14 -2.91 -0.02 4.28 16 Total: -1.00 -62.60 325.65 5.14 -57.46 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 1.04 Total: 14.17 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 5.83 Total: -20.25 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -1.60 Total: -81.01 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.92 Total: -11.28 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -1.25 Total: -5.11 kcal Total: -62.60 5.14 -57.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068815613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.012 kcal (2) G-P(sol) polarization free energy of solvation -62.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds