Wall clock time and date at job start Tue Mar 31 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99677 * 2 1 4 4 C 1.53001 * 109.46747 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47663 * 65.00152 * 4 3 2 6 6 C 1.46503 * 119.99875 * 278.14187 * 5 4 3 7 7 C 1.50701 * 109.47179 * 270.00167 * 6 5 4 8 8 H 1.07996 * 119.99805 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99900 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00019 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99654 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46936 * 90.00156 * 11 9 7 13 13 H 1.48506 * 109.46846 * 209.99510 * 11 9 7 14 14 H 1.48496 * 109.47312 * 329.99773 * 11 9 7 15 15 C 1.34775 * 120.00479 * 98.13486 * 5 4 3 16 16 O 1.21568 * 120.00230 * 186.22714 * 15 5 4 17 17 C 1.47722 * 119.99638 * 6.23535 * 15 5 4 18 18 C 1.39649 * 120.11925 * 330.50933 * 17 15 5 19 19 C 1.37840 * 119.87962 * 180.23043 * 18 17 15 20 20 C 1.38657 * 120.11699 * 359.49468 * 19 18 17 21 21 F 1.35098 * 119.88239 * 180.27553 * 20 19 18 22 22 C 1.38654 * 120.23796 * 0.25175 * 20 19 18 23 23 C 1.37837 * 120.12127 * 0.02562 * 22 20 19 24 24 H 1.08997 * 109.47171 * 60.00034 * 1 2 3 25 25 H 1.09002 * 109.46979 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47375 * 300.00101 * 1 2 3 27 27 H 1.08998 * 109.47334 * 60.00017 * 3 2 1 28 28 H 1.08999 * 109.47153 * 299.99321 * 3 2 1 29 29 H 1.08996 * 109.47315 * 304.99506 * 4 3 2 30 30 H 1.09006 * 109.47263 * 185.00163 * 4 3 2 31 31 H 1.09007 * 109.47173 * 29.99816 * 6 5 4 32 32 H 1.09001 * 109.47562 * 149.99454 * 6 5 4 33 33 H 0.97003 * 120.00242 * 180.02562 * 10 9 7 34 34 H 1.07995 * 120.06031 * 0.02562 * 18 17 15 35 35 H 1.07996 * 119.94402 * 179.76537 * 19 18 17 36 36 H 1.08001 * 119.93873 * 180.02562 * 22 20 19 37 37 H 1.08004 * 120.06243 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 3.9353 -0.8923 -1.4023 7 6 5.2448 -1.4809 -0.9441 8 1 6.0288 -0.8344 -0.5784 9 6 5.4422 -2.8446 -0.9927 10 7 4.4876 -3.6317 -1.4385 11 14 7.0656 -3.5741 -0.4254 12 1 6.9879 -3.8872 1.0241 13 1 7.3418 -4.8189 -1.1866 14 1 8.1576 -2.5961 -0.6627 15 6 4.4179 1.3340 -2.2670 16 8 4.6759 0.8316 -3.3434 17 6 4.5891 2.7881 -2.0705 18 6 3.7816 3.4719 -1.1591 19 6 3.9424 4.8296 -0.9832 20 6 4.9108 5.5143 -1.7014 21 9 5.0681 6.8440 -1.5211 22 6 5.7188 4.8393 -2.6036 23 6 5.5626 3.4827 -2.7915 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8514 0.5683 0.8409 30 1 3.9785 2.1765 0.0890 31 1 3.1236 -1.2973 -0.7978 32 1 3.7697 -1.1456 -2.4495 33 1 4.6264 -4.5912 -1.4724 34 1 3.0303 2.9387 -0.5957 35 1 3.3160 5.3601 -0.2815 36 1 6.4718 5.3774 -3.1602 37 1 6.1928 2.9578 -3.4942 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071140976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:19 Heat of formation + Delta-G solvation = -65.995387 kcal Electronic energy + Delta-G solvation = -22143.973951 eV Core-core repulsion = 18609.577478 eV Total energy + Delta-G solvation = -3534.396473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.03656 -40.20979 -37.93676 -37.45510 -35.09510 -32.84885 -31.33159 -30.71095 -29.61874 -27.10710 -26.08469 -23.88362 -23.13702 -22.70365 -21.98879 -19.21507 -17.83531 -17.16696 -16.54177 -16.44496 -16.13842 -15.72559 -15.56395 -15.09111 -14.80167 -14.51225 -14.36627 -13.94508 -13.72634 -13.29798 -13.13931 -12.80575 -12.40770 -12.04322 -11.86482 -11.76060 -11.60897 -11.27634 -10.96710 -10.89541 -10.71974 -10.39404 -10.12678 -9.60228 -9.45585 -9.18859 -9.08367 -8.69052 -8.35645 -7.66918 -5.97728 -4.02017 0.79999 1.12179 3.10552 3.33458 3.39758 3.43554 3.72439 3.94106 3.96303 4.11497 4.48808 4.60559 4.72975 4.81804 5.11841 5.20881 5.25568 5.33377 5.36939 5.39893 5.49322 5.53852 5.55603 5.75850 5.83258 5.86648 5.95033 6.08886 6.20701 6.29309 6.71977 7.23738 7.37012 7.52373 7.62735 7.99896 8.30735 8.39742 8.88829 9.06101 9.61664 11.10318 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.005540 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.043383 B = 5053.004908 C = 6288.372952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.037 3.963 4 C 0.078 3.922 5 N -0.578 5.578 6 C 0.245 3.755 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.543 3.457 16 O -0.534 6.534 17 C -0.125 4.125 18 C -0.096 4.096 19 C -0.162 4.162 20 C 0.107 3.893 21 F -0.141 7.141 22 C -0.160 4.160 23 C -0.038 4.038 24 H 0.036 0.964 25 H 0.086 0.914 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.162 0.838 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.012 16.457 3.855 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.041 4.041 4 C -0.046 4.046 5 N -0.308 5.308 6 C 0.127 3.873 7 C -0.567 4.567 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.330 3.670 16 O -0.412 6.412 17 C -0.129 4.129 18 C -0.114 4.114 19 C -0.181 4.181 20 C 0.087 3.913 21 F -0.120 7.120 22 C -0.179 4.179 23 C -0.057 4.057 24 H 0.055 0.945 25 H 0.104 0.896 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.179 0.821 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.810 15.815 3.261 16.848 hybrid contribution 0.687 0.052 0.450 0.823 sum -4.123 15.866 3.711 16.808 Atomic orbital electron populations 1.22733 0.81933 1.02811 0.99150 1.88155 1.18822 1.26182 1.95107 1.23139 0.95096 0.86127 0.99715 1.22339 0.91633 1.00708 0.89899 1.48094 1.60804 1.09904 1.11963 1.19456 0.97597 0.71213 0.99065 1.21456 1.00223 0.91992 1.43035 0.92625 1.24900 0.96806 0.96935 0.95323 1.69942 1.32593 1.04228 1.46332 0.86535 0.83955 0.78637 0.78496 1.20677 1.21141 1.19987 1.18084 0.78863 0.85152 0.84887 1.90761 1.51050 1.74308 1.25106 1.20429 0.98532 0.95391 0.98502 1.22229 0.99628 0.93475 0.96088 1.21089 0.99788 0.94838 1.02361 1.17933 0.97639 0.77451 0.98240 1.91493 1.94924 1.31229 1.94310 1.21105 1.01399 0.95067 1.00286 1.21154 0.95627 0.92581 0.96338 0.94492 0.89582 0.94621 0.92622 0.93238 0.88985 0.87466 0.92724 0.94019 0.92821 0.82129 0.84370 0.84314 0.83813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.50 16 2 O -0.36 -6.19 8.82 -35.23 -0.31 -6.50 16 3 C 0.04 0.51 5.04 37.16 0.19 0.70 16 4 C 0.08 1.25 5.34 -4.04 -0.02 1.23 16 5 N -0.58 -12.32 2.46 -176.22 -0.43 -12.75 16 6 C 0.25 6.51 5.04 -5.19 -0.03 6.48 16 7 C -0.53 -15.11 9.39 -34.44 -0.32 -15.43 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 11 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.54 11.52 7.46 -12.39 -0.09 11.42 16 16 O -0.53 -13.56 16.26 5.31 0.09 -13.48 16 17 C -0.13 -2.01 5.59 -104.97 -0.59 -2.60 16 18 C -0.10 -1.21 7.48 -39.20 -0.29 -1.51 16 19 C -0.16 -1.76 10.01 -39.57 -0.40 -2.16 16 20 C 0.11 1.26 7.31 -39.27 -0.29 0.97 16 21 F -0.14 -1.65 17.26 2.25 0.04 -1.61 16 22 C -0.16 -1.90 10.01 -39.57 -0.40 -2.30 16 23 C -0.04 -0.55 9.59 -39.20 -0.38 -0.92 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.65 7.24 -51.93 -0.38 0.27 16 29 H 0.09 1.56 8.13 -51.93 -0.42 1.14 16 30 H 0.11 1.40 4.05 -52.02 -0.21 1.19 16 31 H 0.05 1.50 6.40 -51.93 -0.33 1.16 16 32 H 0.04 1.26 7.34 -51.93 -0.38 0.88 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.16 1.81 2.59 -52.49 -0.14 1.68 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.14 2.08 7.92 -52.48 -0.42 1.67 16 LS Contribution 316.14 15.07 4.76 4.76 Total: -1.00 -34.09 316.14 -6.09 -40.18 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.36 Total: -0.62 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.60 Total: -0.91 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.30 Total: -38.81 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.22 Total: -19.98 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.09 -6.09 -40.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071140976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.816 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds