Wall clock time and date at job start Tue Mar 31 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99677 * 2 1 4 4 C 1.53001 * 109.46747 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47663 * 65.00152 * 4 3 2 6 6 C 1.46503 * 119.99875 * 278.14187 * 5 4 3 7 7 C 1.50701 * 109.47179 * 270.00167 * 6 5 4 8 8 H 1.07996 * 119.99805 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99900 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00019 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99654 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46936 * 90.00156 * 11 9 7 13 13 H 1.48506 * 109.46846 * 209.99510 * 11 9 7 14 14 H 1.48496 * 109.47312 * 329.99773 * 11 9 7 15 15 C 1.34775 * 120.00479 * 98.13486 * 5 4 3 16 16 O 1.21568 * 120.00230 * 186.22714 * 15 5 4 17 17 C 1.47722 * 119.99638 * 6.23535 * 15 5 4 18 18 C 1.39649 * 120.11925 * 330.50933 * 17 15 5 19 19 C 1.37840 * 119.87962 * 180.23043 * 18 17 15 20 20 C 1.38657 * 120.11699 * 359.49468 * 19 18 17 21 21 F 1.35098 * 119.88239 * 180.27553 * 20 19 18 22 22 C 1.38654 * 120.23796 * 0.25175 * 20 19 18 23 23 C 1.37837 * 120.12127 * 0.02562 * 22 20 19 24 24 H 1.08997 * 109.47171 * 60.00034 * 1 2 3 25 25 H 1.09002 * 109.46979 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47375 * 300.00101 * 1 2 3 27 27 H 1.08998 * 109.47334 * 60.00017 * 3 2 1 28 28 H 1.08999 * 109.47153 * 299.99321 * 3 2 1 29 29 H 1.08996 * 109.47315 * 304.99506 * 4 3 2 30 30 H 1.09006 * 109.47263 * 185.00163 * 4 3 2 31 31 H 1.09007 * 109.47173 * 29.99816 * 6 5 4 32 32 H 1.09001 * 109.47562 * 149.99454 * 6 5 4 33 33 H 0.97003 * 120.00242 * 180.02562 * 10 9 7 34 34 H 1.07995 * 120.06031 * 0.02562 * 18 17 15 35 35 H 1.07996 * 119.94402 * 179.76537 * 19 18 17 36 36 H 1.08001 * 119.93873 * 180.02562 * 22 20 19 37 37 H 1.08004 * 120.06243 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 3.9353 -0.8923 -1.4023 7 6 5.2448 -1.4809 -0.9441 8 1 6.0288 -0.8344 -0.5784 9 6 5.4422 -2.8446 -0.9927 10 7 4.4876 -3.6317 -1.4385 11 14 7.0656 -3.5741 -0.4254 12 1 6.9879 -3.8872 1.0241 13 1 7.3418 -4.8189 -1.1866 14 1 8.1576 -2.5961 -0.6627 15 6 4.4179 1.3340 -2.2670 16 8 4.6759 0.8316 -3.3434 17 6 4.5891 2.7881 -2.0705 18 6 3.7816 3.4719 -1.1591 19 6 3.9424 4.8296 -0.9832 20 6 4.9108 5.5143 -1.7014 21 9 5.0681 6.8440 -1.5211 22 6 5.7188 4.8393 -2.6036 23 6 5.5626 3.4827 -2.7915 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8514 0.5683 0.8409 30 1 3.9785 2.1765 0.0890 31 1 3.1236 -1.2973 -0.7978 32 1 3.7697 -1.1456 -2.4495 33 1 4.6264 -4.5912 -1.4724 34 1 3.0303 2.9387 -0.5957 35 1 3.3160 5.3601 -0.2815 36 1 6.4718 5.3774 -3.1602 37 1 6.1928 2.9578 -3.4942 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071140976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:19 Heat of formation + Delta-G solvation = -88.734589 kcal Electronic energy + Delta-G solvation = -22144.959996 eV Core-core repulsion = 18609.577478 eV Total energy + Delta-G solvation = -3535.382519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.96325 -41.57894 -39.13167 -38.80881 -36.70684 -34.91248 -32.58616 -31.92495 -30.90301 -28.99266 -27.19137 -25.56874 -24.28153 -23.96207 -23.40622 -20.66416 -18.87906 -18.66869 -18.43995 -17.75036 -17.22612 -16.86517 -16.76343 -16.62447 -16.17456 -16.08986 -15.54767 -15.40163 -14.77557 -14.73658 -14.33425 -14.14715 -13.96216 -13.40589 -13.31181 -13.12675 -13.05019 -12.77059 -12.67425 -12.53181 -12.19930 -11.98712 -11.80073 -11.68610 -10.79135 -10.62824 -10.51324 -10.14491 -9.81588 -9.43727 -8.18941 -6.33752 -0.30201 0.15330 1.36718 1.39928 1.50003 1.76667 2.20771 2.42802 2.63496 2.89176 3.10660 3.14058 3.47745 3.68722 3.85633 4.06438 4.16365 4.20397 4.26717 4.33287 4.42807 4.54263 4.60959 4.73421 4.84720 4.89115 4.92021 5.00656 5.05213 5.16823 5.30763 5.34296 5.55460 5.75244 5.86124 6.09932 6.34322 6.70571 6.76503 7.24827 7.40519 8.88414 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.005540 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.043383 B = 5053.004908 C = 6288.372952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.037 3.963 4 C 0.071 3.929 5 N -0.584 5.584 6 C 0.266 3.734 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.008 3.992 10 N -0.927 5.927 11 Si 0.968 3.032 12 H -0.263 1.263 13 H -0.281 1.281 14 H -0.272 1.272 15 C 0.535 3.465 16 O -0.595 6.595 17 C -0.149 4.149 18 C -0.088 4.088 19 C -0.143 4.143 20 C 0.113 3.887 21 F -0.135 7.135 22 C -0.151 4.151 23 C -0.050 4.050 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.144 0.856 31 H 0.042 0.958 32 H -0.010 1.010 33 H 0.266 0.734 34 H 0.176 0.824 35 H 0.179 0.821 36 H 0.163 0.837 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.974 19.330 6.020 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C -0.040 4.040 4 C -0.051 4.051 5 N -0.313 5.313 6 C 0.145 3.855 7 C -0.585 4.585 8 H 0.070 0.930 9 C -0.191 4.191 10 N -0.566 5.566 11 Si 0.792 3.208 12 H -0.188 1.188 13 H -0.206 1.206 14 H -0.197 1.197 15 C 0.325 3.675 16 O -0.478 6.478 17 C -0.152 4.152 18 C -0.106 4.106 19 C -0.162 4.162 20 C 0.094 3.906 21 F -0.114 7.114 22 C -0.170 4.170 23 C -0.069 4.069 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.123 0.877 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.160 0.840 31 H 0.060 0.940 32 H 0.008 0.992 33 H 0.075 0.925 34 H 0.193 0.807 35 H 0.196 0.804 36 H 0.181 0.819 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.796 18.732 5.470 20.095 hybrid contribution 0.628 -0.727 -0.236 0.990 sum -4.167 18.005 5.234 19.208 Atomic orbital electron populations 1.22881 0.79944 1.03124 1.00995 1.88084 1.21226 1.28372 1.95526 1.23251 0.92914 0.85515 1.02355 1.22761 0.93926 1.01673 0.86718 1.48038 1.61039 1.08051 1.14151 1.18809 0.96510 0.74871 0.95330 1.21741 1.00874 0.92592 1.43279 0.92966 1.25852 1.00706 0.97347 0.95179 1.70075 1.34788 1.04644 1.47127 0.85414 0.78951 0.77618 0.78791 1.18816 1.20592 1.19725 1.18917 0.77331 0.87439 0.83789 1.90707 1.53583 1.76072 1.27415 1.20054 1.01384 0.92100 1.01696 1.22255 0.98962 0.94281 0.95076 1.21422 0.99146 0.93752 1.01843 1.18057 0.97290 0.77624 0.97676 1.91521 1.94837 1.30843 1.94162 1.21250 1.01739 0.93770 1.00192 1.21100 0.95643 0.93738 0.96423 0.93754 0.90255 0.91487 0.87659 0.92501 0.90320 0.83952 0.94010 0.99194 0.92496 0.80683 0.80358 0.81910 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.41 -13.98 8.82 -148.98 -1.31 -15.29 16 3 C 0.04 0.93 5.04 71.98 0.36 1.29 16 4 C 0.07 2.22 5.34 86.38 0.46 2.68 16 5 N -0.58 -25.93 2.46 -829.70 -2.04 -27.97 16 6 C 0.27 15.03 5.04 85.63 0.43 15.46 16 7 C -0.55 -32.59 9.39 25.60 0.24 -32.35 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.01 0.48 5.46 84.66 0.46 0.94 16 10 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 11 Si 0.97 45.93 29.54 68.60 2.03 47.95 16 12 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 14 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 15 C 0.54 23.80 7.46 86.75 0.65 24.44 16 16 O -0.60 -32.59 16.26 -3.93 -0.06 -32.65 16 17 C -0.15 -4.74 5.59 -20.09 -0.11 -4.85 16 18 C -0.09 -1.95 7.48 22.52 0.17 -1.79 16 19 C -0.14 -2.43 10.01 22.28 0.22 -2.21 16 20 C 0.11 2.19 7.31 22.47 0.16 2.36 16 21 F -0.14 -2.55 17.26 44.97 0.78 -1.77 16 22 C -0.15 -3.21 10.01 22.27 0.22 -2.99 16 23 C -0.05 -1.42 9.59 22.52 0.22 -1.20 16 24 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 1.36 7.24 -2.39 -0.02 1.34 16 29 H 0.08 2.66 8.13 -2.39 -0.02 2.64 16 30 H 0.14 3.38 4.05 -2.47 -0.01 3.37 16 31 H 0.04 2.44 6.40 -2.38 -0.02 2.43 16 32 H -0.01 -0.66 7.34 -2.39 -0.02 -0.68 16 33 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 34 H 0.18 3.34 2.59 -2.91 -0.01 3.33 16 35 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.13 3.97 7.92 -2.91 -0.02 3.95 16 Total: -1.00 -80.18 316.14 5.50 -74.69 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 1.09 Total: 8.79 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 4.74 Total: 3.69 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -1.76 Total: -85.40 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -1.38 Total: -47.95 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.78 Total: -1.77 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -80.18 5.50 -74.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071140976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.048 kcal (2) G-P(sol) polarization free energy of solvation -80.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds