Wall clock time and date at job start Tue Mar 31 2020 05:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99913 * 2 1 4 4 C 1.53002 * 109.46912 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47115 * 65.00424 * 4 3 2 6 6 C 1.46501 * 120.00246 * 269.99799 * 5 4 3 7 7 C 1.50700 * 109.47221 * 269.99831 * 6 5 4 8 8 H 1.07997 * 119.99759 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99977 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00102 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99818 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47261 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47143 * 120.00688 * 11 9 7 14 14 H 1.48500 * 109.47042 * 239.99959 * 11 9 7 15 15 C 1.39002 * 119.99946 * 89.99394 * 5 4 3 16 16 C 1.39143 * 119.70431 * 185.00156 * 15 5 4 17 17 C 1.38305 * 119.09428 * 179.97438 * 16 15 5 18 18 C 1.38883 * 118.50614 * 0.02562 * 17 16 15 19 19 N 1.48005 * 120.32989 * 180.02562 * 18 17 16 20 20 O 1.21793 * 120.00690 * 359.97438 * 19 18 17 21 21 O 1.21801 * 119.99402 * 180.02562 * 19 18 17 22 22 C 1.38017 * 119.32938 * 0.02562 * 18 17 16 23 23 N 1.31970 * 120.85887 * 359.97438 * 22 18 17 24 24 H 1.09002 * 109.47144 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47373 * 299.99866 * 1 2 3 26 26 H 1.09005 * 109.46696 * 60.00314 * 1 2 3 27 27 H 1.09005 * 109.46860 * 59.99999 * 3 2 1 28 28 H 1.08999 * 109.47399 * 299.99920 * 3 2 1 29 29 H 1.08998 * 109.47250 * 305.00047 * 4 3 2 30 30 H 1.09000 * 109.47143 * 185.00361 * 4 3 2 31 31 H 1.09003 * 109.46634 * 29.99811 * 6 5 4 32 32 H 1.08999 * 109.47203 * 149.99410 * 6 5 4 33 33 H 0.96998 * 119.99950 * 180.02562 * 10 9 7 34 34 H 1.07994 * 120.45260 * 0.25357 * 16 15 5 35 35 H 1.08001 * 120.74349 * 180.02562 * 17 16 15 36 36 H 1.08004 * 119.57177 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3404 7 6 5.5017 -1.2981 -0.9414 8 1 6.2200 -0.5462 -0.6499 9 6 5.8610 -2.6292 -0.9476 10 7 4.9861 -3.5449 -1.3022 11 14 7.5905 -3.1320 -0.4523 12 1 8.3757 -1.9221 -0.0989 13 1 7.5253 -4.0395 0.7214 14 1 8.2454 -3.8343 -1.5851 15 6 4.2722 1.3572 -2.3535 16 6 4.5895 0.7581 -3.5686 17 6 4.8810 1.5592 -4.6576 18 6 4.8458 2.9380 -4.4944 19 7 5.1503 3.8334 -5.6329 20 8 5.4339 3.3620 -6.7196 21 8 5.1181 5.0417 -5.4829 22 6 4.5241 3.4647 -3.2599 23 7 4.2504 2.6759 -2.2380 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8507 0.5685 0.8427 30 1 3.9784 2.1765 0.0903 31 1 3.3857 -1.3631 -0.6714 32 1 3.9138 -1.2121 -2.3646 33 1 5.2388 -4.4813 -1.3061 34 1 4.6036 -0.3178 -3.6612 35 1 5.1303 1.1225 -5.6134 36 1 4.4960 4.5363 -3.1286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071231216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:08 Heat of formation + Delta-G solvation = -5.592837 kcal Electronic energy + Delta-G solvation = -21928.625845 eV Core-core repulsion = 18416.768585 eV Total energy + Delta-G solvation = -3511.857260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.77868 -40.14403 -37.94840 -36.21454 -36.15601 -33.14613 -32.43805 -31.33705 -29.55815 -27.50203 -26.27524 -25.35497 -23.94272 -23.02918 -22.37714 -20.72384 -18.96727 -18.37684 -17.30925 -17.15722 -16.69508 -16.48796 -16.08531 -15.64327 -14.93131 -14.75188 -14.59672 -14.17153 -13.70208 -13.28534 -12.89973 -12.71748 -12.36434 -12.10616 -11.65804 -11.53157 -11.23328 -11.13143 -11.03970 -10.95437 -10.82602 -10.69542 -10.43540 -10.30826 -9.97903 -9.62095 -9.47335 -9.45738 -8.69482 -7.38380 -6.30523 -4.40490 0.31579 1.31147 1.80949 1.86320 3.13736 3.21555 3.23369 3.31698 3.79856 3.95892 4.22480 4.44797 4.71431 4.92594 5.00050 5.03218 5.19106 5.28285 5.40685 5.45508 5.47300 5.66502 5.74075 5.77176 5.88993 5.94114 6.12322 6.39201 6.64487 6.82078 7.04023 7.26533 7.27815 7.63206 7.79867 7.86492 8.04496 8.08772 8.66356 9.27366 10.74885 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012089 B = 0.005926 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.617908 B = 4724.191682 C = 6414.358557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.377 6.377 3 C 0.048 3.952 4 C 0.119 3.881 5 N -0.543 5.543 6 C 0.243 3.757 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.068 3.932 10 N -0.887 5.887 11 Si 0.899 3.101 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.281 1.281 15 C 0.446 3.554 16 C -0.218 4.218 17 C 0.015 3.985 18 C -0.191 4.191 19 N 0.058 4.942 20 O -0.192 6.192 21 O -0.194 6.194 22 C 0.233 3.767 23 N -0.548 5.548 24 H 0.084 0.916 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.267 0.733 34 H 0.163 0.837 35 H 0.153 0.847 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.026 8.267 0.761 10.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C -0.030 4.030 4 C -0.004 4.004 5 N -0.243 5.243 6 C 0.124 3.876 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.136 4.136 10 N -0.525 5.525 11 Si 0.726 3.274 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.207 1.207 15 C 0.206 3.794 16 C -0.244 4.244 17 C -0.010 4.010 18 C -0.284 4.284 19 N 0.568 4.432 20 O -0.401 6.401 21 O -0.403 6.403 22 C 0.068 3.932 23 N -0.269 5.269 24 H 0.103 0.897 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.181 0.819 35 H 0.171 0.829 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.357 7.576 2.312 10.157 hybrid contribution 0.999 -0.328 -0.819 1.333 sum -5.357 7.248 1.493 9.136 Atomic orbital electron populations 1.22695 0.81821 1.02599 0.99268 1.88051 1.18974 1.27289 1.95234 1.23028 0.94784 0.85138 1.00033 1.21587 0.91437 1.00113 0.87293 1.47666 1.60694 1.08315 1.07654 1.19754 0.98020 0.70496 0.99298 1.21477 0.96864 0.92619 1.47319 0.92034 1.24920 0.97795 0.96194 0.94700 1.69929 1.34412 1.01359 1.46769 0.86420 0.83819 0.78712 0.78424 1.19701 1.20688 1.20666 1.18917 0.85238 0.87534 0.87704 1.21707 1.08852 1.02862 0.90955 1.21063 0.90015 0.89855 1.00087 1.21667 1.26360 0.91170 0.89197 1.43340 0.96799 1.01232 1.01873 1.94487 1.52389 1.79939 1.13319 1.94468 1.57825 0.97525 1.90446 1.22258 0.85723 1.00488 0.84779 1.67622 1.24816 1.03817 1.30611 0.89711 0.94530 0.94616 0.92717 0.93433 0.88905 0.88421 0.92186 0.94241 0.92349 0.81944 0.82947 0.80997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.06 9.53 -35.23 -0.34 -6.39 16 3 C 0.05 0.67 6.28 37.16 0.23 0.91 16 4 C 0.12 1.89 5.88 -4.04 -0.02 1.86 16 5 N -0.54 -10.17 2.53 -175.21 -0.44 -10.61 16 6 C 0.24 5.42 4.82 -5.19 -0.03 5.39 16 7 C -0.54 -13.51 9.39 -34.44 -0.32 -13.84 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -23.68 13.29 55.43 0.74 -22.94 16 11 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 C 0.45 7.97 7.37 -155.02 -1.14 6.83 16 16 C -0.22 -3.77 9.27 -39.22 -0.36 -4.14 16 17 C 0.02 0.24 9.66 -39.32 -0.38 -0.14 16 18 C -0.19 -3.05 6.87 -79.80 -0.55 -3.60 16 19 N 0.06 0.99 4.45 34.04 0.15 1.14 16 20 O -0.19 -3.38 18.52 -29.46 -0.55 -3.92 16 21 O -0.19 -3.27 18.46 -29.46 -0.54 -3.81 16 22 C 0.23 3.47 10.71 -17.57 -0.19 3.29 16 23 N -0.55 -8.90 9.08 -12.44 -0.11 -9.01 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.53 8.07 -51.93 -0.42 1.11 16 30 H 0.10 1.41 7.30 -51.93 -0.38 1.03 16 31 H 0.06 1.45 7.11 -51.93 -0.37 1.09 16 32 H 0.04 0.92 5.97 -51.93 -0.31 0.61 16 33 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.16 2.95 6.02 -52.49 -0.32 2.64 16 35 H 0.15 2.12 7.69 -52.49 -0.40 1.71 16 36 H 0.17 2.11 7.61 -52.48 -0.40 1.71 16 LS Contribution 320.06 15.07 4.82 4.82 Total: -1.00 -27.68 320.06 -7.29 -34.98 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.26 Total: 1.03 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -1.75 Total: -0.29 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.33 Total: -41.43 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.43 Total: -14.13 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.68 -7.29 -34.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071231216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.382 kcal (2) G-P(sol) polarization free energy of solvation -27.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds