Wall clock time and date at job start Tue Mar 31 2020 05:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99892 * 2 1 4 4 C 1.52997 * 109.46932 * 66.04783 * 3 2 1 5 5 C 1.53007 * 109.47058 * 180.02562 * 4 3 2 6 6 S 1.81001 * 109.47002 * 180.02562 * 5 4 3 7 7 C 1.76201 * 99.99517 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00656 * 359.97438 * 7 6 5 9 9 C 1.38803 * 119.99744 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00136 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00043 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47067 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46920 * 119.99915 * 11 9 7 14 14 H 1.48499 * 109.46860 * 239.99801 * 11 9 7 15 15 C 1.46896 * 111.00270 * 236.04731 * 2 1 3 16 16 C 1.50707 * 109.47008 * 287.85118 * 15 2 1 17 17 C 1.38163 * 120.02464 * 105.53360 * 16 15 2 18 18 C 1.38243 * 120.05341 * 179.97438 * 17 16 15 19 19 C 1.38289 * 120.11271 * 359.97438 * 18 17 16 20 20 C 1.38123 * 120.05141 * 359.97438 * 19 18 17 21 21 C 1.38705 * 120.02891 * 285.48921 * 16 15 2 22 22 O 1.35907 * 120.05337 * 0.04802 * 21 16 15 23 23 H 1.08997 * 109.46872 * 177.86150 * 1 2 3 24 24 H 1.09006 * 109.47040 * 297.85815 * 1 2 3 25 25 H 1.08997 * 109.47151 * 57.85809 * 1 2 3 26 26 H 1.08997 * 109.47025 * 186.04565 * 3 2 1 27 27 H 1.09004 * 109.47034 * 306.04639 * 3 2 1 28 28 H 1.08997 * 109.47088 * 299.99744 * 4 3 2 29 29 H 1.08996 * 109.47721 * 60.00017 * 4 3 2 30 30 H 1.08997 * 109.46730 * 299.99679 * 5 4 3 31 31 H 1.08996 * 109.47072 * 59.99336 * 5 4 3 32 32 H 0.96998 * 120.00626 * 180.02562 * 10 9 7 33 33 H 1.08997 * 109.47678 * 167.85143 * 15 2 1 34 34 H 1.09004 * 109.47052 * 47.85171 * 15 2 1 35 35 H 1.08002 * 119.97874 * 359.97438 * 17 16 15 36 36 H 1.07996 * 119.94862 * 180.02562 * 18 17 16 37 37 H 1.07992 * 119.97444 * 180.02562 * 19 18 17 38 38 H 1.08009 * 120.02600 * 179.72411 * 20 19 18 39 39 H 0.96701 * 114.00045 * 264.87318 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1792 3.4861 1.3180 6 16 1.7492 4.2973 2.8779 7 6 2.4818 5.8777 2.6128 8 1 3.0009 6.0842 1.6885 9 6 2.3928 6.8570 3.5924 10 7 1.7606 6.6053 4.7192 11 14 3.1701 8.5323 3.3118 12 1 3.8166 8.5603 1.9752 13 1 2.1214 9.5817 3.3770 14 1 4.1905 8.7864 4.3602 15 6 1.9955 -0.7659 -1.1375 16 6 1.7689 -2.2369 -0.9007 17 6 0.7796 -2.9048 -1.5964 18 6 0.5716 -4.2543 -1.3800 19 6 1.3530 -4.9391 -0.4674 20 6 2.3439 -4.2761 0.2298 21 6 2.5539 -2.9215 0.0153 22 8 3.5276 -2.2666 0.7009 23 1 -0.3633 -1.0269 -0.0383 24 1 -0.3633 0.4802 0.9086 25 1 -0.3633 0.5467 -0.8701 26 1 3.0797 1.3445 -0.1082 27 1 1.5610 1.9274 -0.8309 28 1 0.5472 2.0844 1.4265 29 1 2.0657 1.5016 2.1492 30 1 3.2634 3.4594 1.2096 31 1 1.7445 4.0417 0.4871 32 1 1.6980 7.2897 5.4037 33 1 3.0636 -0.5749 -1.2411 34 1 1.4819 -0.4614 -2.0495 35 1 0.1682 -2.3724 -2.3100 36 1 -0.2019 -4.7748 -1.9250 37 1 1.1888 -5.9934 -0.3004 38 1 2.9511 -4.8104 0.9457 39 1 4.4049 -2.3348 0.2998 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072517865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:26 Heat of formation + Delta-G solvation = -25.604016 kcal Electronic energy + Delta-G solvation = -18882.542518 eV Core-core repulsion = 15916.110722 eV Total energy + Delta-G solvation = -2966.431796 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.12622 -37.55729 -36.70613 -33.31100 -32.38753 -31.21860 -29.97242 -27.26939 -26.38648 -25.43665 -23.05639 -22.78221 -21.08439 -20.48550 -18.41355 -17.42617 -16.32565 -16.12277 -15.80524 -15.29383 -15.09978 -14.77106 -14.52144 -13.98849 -13.93628 -13.81049 -13.02267 -12.79648 -12.49507 -12.32301 -12.11953 -11.95160 -11.72929 -11.56153 -11.28748 -11.21216 -11.05070 -10.71284 -10.62001 -10.48753 -10.19943 -9.48704 -9.10053 -9.02768 -8.74082 -8.24664 -8.21383 -6.47309 -6.18786 -3.88314 1.05936 1.09392 3.23318 3.24613 3.32228 3.38070 3.62671 4.06475 4.15924 4.26918 4.58041 4.65704 4.81482 4.99017 5.16948 5.20782 5.24613 5.26967 5.37012 5.40378 5.49664 5.61292 5.69271 5.71586 5.78010 5.83976 5.95157 6.03293 6.13062 6.16638 6.23986 6.31794 6.43569 6.61358 6.68318 6.84053 7.12893 7.16408 7.60441 7.64619 8.40880 9.27417 10.89486 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042699 B = 0.002674 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.593060 B =10466.850099 C =10594.002489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.528 5.528 3 C 0.063 3.937 4 C -0.093 4.093 5 C -0.111 4.111 6 S -0.133 6.133 7 C -0.514 4.514 8 H 0.072 0.928 9 C 0.070 3.930 10 N -0.870 5.870 11 Si 0.918 3.082 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.101 3.899 16 C -0.101 4.101 17 C -0.101 4.101 18 C -0.134 4.134 19 C -0.106 4.106 20 C -0.154 4.154 21 C 0.133 3.867 22 O -0.482 6.482 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.023 0.977 26 H 0.072 0.928 27 H 0.030 0.970 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.266 0.734 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.101 -21.787 -14.175 25.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.251 5.251 3 C -0.066 4.066 4 C -0.131 4.131 5 C -0.261 4.261 6 S 0.095 5.905 7 C -0.663 4.663 8 H 0.090 0.910 9 C -0.139 4.139 10 N -0.506 5.506 11 Si 0.745 3.255 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 C -0.027 4.027 16 C -0.102 4.102 17 C -0.119 4.119 18 C -0.152 4.152 19 C -0.125 4.125 20 C -0.172 4.172 21 C 0.088 3.912 22 O -0.291 6.291 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.041 0.959 26 H 0.091 0.909 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -0.825 -22.156 -12.282 25.346 hybrid contribution 1.221 1.790 -2.175 3.070 sum 0.396 -20.366 -14.458 24.979 Atomic orbital electron populations 1.22459 0.87556 1.01474 1.01195 1.61922 1.07738 1.13899 1.41556 1.22200 0.99836 0.86834 0.97727 1.21263 1.01212 0.93899 0.96773 1.23229 1.02246 0.97587 1.03004 1.84657 1.74354 1.13250 1.18234 1.22739 1.40362 0.97525 1.05645 0.90973 1.25021 0.95290 0.99023 0.94555 1.70036 1.40181 1.34225 1.06115 0.86119 0.78873 0.82195 0.78355 1.19644 1.20610 1.20582 1.20857 1.00629 0.89261 0.91951 1.20153 0.97671 0.96050 0.96322 1.20990 0.96964 0.94528 0.99444 1.21101 1.00218 0.94496 0.99386 1.21008 0.95376 0.99866 0.96230 1.21505 1.00503 0.94016 1.01220 1.18282 0.92029 0.89451 0.91451 1.84969 1.18969 1.74487 1.50643 0.91819 0.90629 0.95884 0.90915 0.95181 0.91760 0.90685 0.92184 0.92466 0.92403 0.90126 0.94251 0.85995 0.86003 0.85905 0.85542 0.76055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.13 60.06 0.55 0.81 16 2 N -0.53 -7.03 4.71 -244.37 -1.15 -8.18 16 3 C 0.06 0.90 4.95 -3.82 -0.02 0.88 16 4 C -0.09 -1.62 5.14 -26.73 -0.14 -1.76 16 5 C -0.11 -2.33 5.67 37.16 0.21 -2.12 16 6 S -0.13 -3.60 21.44 -107.50 -2.30 -5.90 16 7 C -0.51 -15.06 9.50 30.94 0.29 -14.77 16 8 H 0.07 2.05 7.80 -52.48 -0.41 1.64 16 9 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 10 N -0.87 -26.47 13.22 55.49 0.73 -25.73 16 11 Si 0.92 21.87 29.55 -169.99 -5.02 16.84 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.10 1.10 4.72 -4.97 -0.02 1.08 16 16 C -0.10 -1.07 4.68 -104.47 -0.49 -1.56 16 17 C -0.10 -0.92 9.05 -39.61 -0.36 -1.28 16 18 C -0.13 -1.10 10.04 -39.56 -0.40 -1.49 16 19 C -0.11 -0.88 10.04 -39.61 -0.40 -1.28 16 20 C -0.15 -1.45 9.99 -39.44 -0.39 -1.84 16 21 C 0.13 1.44 6.68 -39.22 -0.26 1.18 16 22 O -0.48 -5.28 12.85 -19.45 -0.25 -5.53 16 23 H 0.06 0.75 6.86 -51.93 -0.36 0.39 16 24 H 0.08 1.02 6.57 -51.93 -0.34 0.67 16 25 H 0.02 0.27 8.12 -51.93 -0.42 -0.16 16 26 H 0.07 1.00 7.86 -51.93 -0.41 0.60 16 27 H 0.03 0.42 8.11 -51.93 -0.42 0.00 16 28 H 0.06 1.13 6.60 -51.93 -0.34 0.79 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 31 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 32 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.08 0.83 7.68 -51.93 -0.40 0.43 16 34 H 0.04 0.39 7.86 -51.93 -0.41 -0.01 16 35 H 0.12 0.93 8.00 -52.49 -0.42 0.51 16 36 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.38 2.35 9.06 45.56 0.41 2.76 16 LS Contribution 339.59 15.07 5.12 5.12 Total: -1.00 -33.64 339.59 -9.58 -43.22 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.19 Total: 0.37 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -1.52 Total: -20.22 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: -0.42 Total: -33.91 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.25 Total: -5.53 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -2.30 Total: -5.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.64 -9.58 -43.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072517865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.620 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds