Wall clock time and date at job start Tue Mar 31 2020 05:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99892 * 2 1 4 4 C 1.52997 * 109.46932 * 66.04783 * 3 2 1 5 5 C 1.53007 * 109.47058 * 180.02562 * 4 3 2 6 6 S 1.81001 * 109.47002 * 180.02562 * 5 4 3 7 7 C 1.76201 * 99.99517 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00656 * 359.97438 * 7 6 5 9 9 C 1.38803 * 119.99744 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00136 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00043 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47067 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46920 * 119.99915 * 11 9 7 14 14 H 1.48499 * 109.46860 * 239.99801 * 11 9 7 15 15 C 1.46896 * 111.00270 * 236.04731 * 2 1 3 16 16 C 1.50707 * 109.47008 * 287.85118 * 15 2 1 17 17 C 1.38163 * 120.02464 * 105.53360 * 16 15 2 18 18 C 1.38243 * 120.05341 * 179.97438 * 17 16 15 19 19 C 1.38289 * 120.11271 * 359.97438 * 18 17 16 20 20 C 1.38123 * 120.05141 * 359.97438 * 19 18 17 21 21 C 1.38705 * 120.02891 * 285.48921 * 16 15 2 22 22 O 1.35907 * 120.05337 * 0.04802 * 21 16 15 23 23 H 1.08997 * 109.46872 * 177.86150 * 1 2 3 24 24 H 1.09006 * 109.47040 * 297.85815 * 1 2 3 25 25 H 1.08997 * 109.47151 * 57.85809 * 1 2 3 26 26 H 1.08997 * 109.47025 * 186.04565 * 3 2 1 27 27 H 1.09004 * 109.47034 * 306.04639 * 3 2 1 28 28 H 1.08997 * 109.47088 * 299.99744 * 4 3 2 29 29 H 1.08996 * 109.47721 * 60.00017 * 4 3 2 30 30 H 1.08997 * 109.46730 * 299.99679 * 5 4 3 31 31 H 1.08996 * 109.47072 * 59.99336 * 5 4 3 32 32 H 0.96998 * 120.00626 * 180.02562 * 10 9 7 33 33 H 1.08997 * 109.47678 * 167.85143 * 15 2 1 34 34 H 1.09004 * 109.47052 * 47.85171 * 15 2 1 35 35 H 1.08002 * 119.97874 * 359.97438 * 17 16 15 36 36 H 1.07996 * 119.94862 * 180.02562 * 18 17 16 37 37 H 1.07992 * 119.97444 * 180.02562 * 19 18 17 38 38 H 1.08009 * 120.02600 * 179.72411 * 20 19 18 39 39 H 0.96701 * 114.00045 * 264.87318 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1792 3.4861 1.3180 6 16 1.7492 4.2973 2.8779 7 6 2.4818 5.8777 2.6128 8 1 3.0009 6.0842 1.6885 9 6 2.3928 6.8570 3.5924 10 7 1.7606 6.6053 4.7192 11 14 3.1701 8.5323 3.3118 12 1 3.8166 8.5603 1.9752 13 1 2.1214 9.5817 3.3770 14 1 4.1905 8.7864 4.3602 15 6 1.9955 -0.7659 -1.1375 16 6 1.7689 -2.2369 -0.9007 17 6 0.7796 -2.9048 -1.5964 18 6 0.5716 -4.2543 -1.3800 19 6 1.3530 -4.9391 -0.4674 20 6 2.3439 -4.2761 0.2298 21 6 2.5539 -2.9215 0.0153 22 8 3.5276 -2.2666 0.7009 23 1 -0.3633 -1.0269 -0.0383 24 1 -0.3633 0.4802 0.9086 25 1 -0.3633 0.5467 -0.8701 26 1 3.0797 1.3445 -0.1082 27 1 1.5610 1.9274 -0.8309 28 1 0.5472 2.0844 1.4265 29 1 2.0657 1.5016 2.1492 30 1 3.2634 3.4594 1.2096 31 1 1.7445 4.0417 0.4871 32 1 1.6980 7.2897 5.4037 33 1 3.0636 -0.5749 -1.2411 34 1 1.4819 -0.4614 -2.0495 35 1 0.1682 -2.3724 -2.3100 36 1 -0.2019 -4.7748 -1.9250 37 1 1.1888 -5.9934 -0.3004 38 1 2.9511 -4.8104 0.9457 39 1 4.4049 -2.3348 0.2998 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072517865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:26 Heat of formation + Delta-G solvation = -48.120231 kcal Electronic energy + Delta-G solvation = -18883.518894 eV Core-core repulsion = 15916.110722 eV Total energy + Delta-G solvation = -2967.408172 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.84794 -38.58616 -37.42891 -34.66623 -34.48672 -32.14370 -30.67065 -28.26251 -27.93924 -27.22406 -24.20149 -23.46562 -22.05203 -21.62607 -19.56136 -19.13274 -17.03145 -16.97463 -16.91301 -16.89727 -16.37578 -16.02713 -15.88149 -15.27989 -15.11934 -14.72623 -14.52031 -13.75959 -13.59848 -13.44780 -13.20538 -13.11052 -12.96278 -12.85272 -12.80415 -12.59709 -12.46238 -12.31211 -12.05061 -11.63106 -11.39630 -11.19010 -11.15139 -10.31251 -9.78927 -9.43661 -9.21430 -8.67137 -8.37248 -6.13893 0.37550 0.42502 1.31363 1.38528 1.49686 1.74795 2.28305 2.68532 2.96791 3.13824 3.34111 3.44808 3.83001 3.96677 3.98747 4.17695 4.23233 4.26552 4.37991 4.44565 4.51152 4.58019 4.62664 4.68404 4.72578 4.76864 4.82696 5.03719 5.04788 5.10829 5.19365 5.32776 5.39791 5.48398 5.59552 5.61953 5.99556 6.11308 6.16559 6.18472 6.99405 7.04659 8.72608 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042699 B = 0.002674 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.593060 B =10466.850099 C =10594.002489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.074 3.926 4 C -0.080 4.080 5 C -0.085 4.085 6 S -0.203 6.203 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.013 3.987 10 N -0.909 5.909 11 Si 0.997 3.003 12 H -0.262 1.262 13 H -0.271 1.271 14 H -0.271 1.271 15 C 0.103 3.897 16 C -0.118 4.118 17 C -0.105 4.105 18 C -0.136 4.136 19 C -0.107 4.107 20 C -0.167 4.167 21 C 0.115 3.885 22 O -0.503 6.503 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.271 0.729 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.136 0.864 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.134 0.866 39 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.316 -22.291 -15.971 27.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.055 4.055 4 C -0.119 4.119 5 C -0.234 4.234 6 S 0.026 5.974 7 C -0.684 4.684 8 H 0.091 0.909 9 C -0.192 4.192 10 N -0.545 5.545 11 Si 0.819 3.181 12 H -0.186 1.186 13 H -0.196 1.196 14 H -0.197 1.197 15 C -0.024 4.024 16 C -0.119 4.119 17 C -0.123 4.123 18 C -0.154 4.154 19 C -0.125 4.125 20 C -0.185 4.185 21 C 0.070 3.930 22 O -0.314 6.314 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.154 0.846 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.152 0.848 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -0.604 -22.681 -14.091 26.709 hybrid contribution 1.138 1.807 -1.646 2.696 sum 0.534 -20.874 -15.736 26.146 Atomic orbital electron populations 1.22417 0.87241 1.01900 1.00849 1.61849 1.08183 1.13180 1.43372 1.21991 1.00341 0.87526 0.95625 1.21128 1.00611 0.91798 0.98378 1.23138 1.02498 0.98730 0.99062 1.84711 1.75081 1.14121 1.23491 1.23067 1.40830 0.98431 1.06030 0.90866 1.26113 0.95552 1.03505 0.94014 1.70170 1.41331 1.35882 1.07136 0.84933 0.78060 0.76396 0.78755 1.18573 1.19620 1.19655 1.20866 1.00836 0.89315 0.91340 1.20200 0.98620 0.95824 0.97256 1.21217 0.96611 0.95135 0.99381 1.21434 1.00494 0.94288 0.99203 1.21346 0.94569 1.01054 0.95533 1.21699 1.01236 0.93766 1.01796 1.18518 0.92388 0.90145 0.91946 1.84909 1.20198 1.74825 1.51513 0.91121 0.92199 0.94829 0.90258 0.94261 0.92135 0.92223 0.91846 0.91900 0.91968 0.89821 0.93070 0.84620 0.83606 0.83585 0.84777 0.74180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.13 127.69 1.17 1.74 16 2 N -0.54 -13.83 4.71 -927.04 -4.36 -18.19 16 3 C 0.07 2.04 4.95 86.30 0.43 2.46 16 4 C -0.08 -2.80 5.14 30.60 0.16 -2.64 16 5 C -0.08 -3.55 5.67 71.98 0.41 -3.14 16 6 S -0.20 -11.21 21.44 -56.49 -1.21 -12.42 16 7 C -0.54 -31.67 9.50 67.96 0.65 -31.03 16 8 H 0.07 4.16 7.80 -2.91 -0.02 4.14 16 9 C 0.01 0.74 5.49 84.86 0.47 1.21 16 10 N -0.91 -56.01 13.22 21.65 0.29 -55.73 16 11 Si 1.00 44.63 29.55 68.60 2.03 46.66 16 12 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 13 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 15 C 0.10 2.11 4.72 85.56 0.40 2.51 16 16 C -0.12 -2.34 4.68 -19.77 -0.09 -2.43 16 17 C -0.10 -1.70 9.05 22.25 0.20 -1.50 16 18 C -0.14 -1.89 10.04 22.28 0.22 -1.67 16 19 C -0.11 -1.54 10.04 22.25 0.22 -1.31 16 20 C -0.17 -2.95 9.99 22.36 0.22 -2.73 16 21 C 0.12 2.40 6.68 22.50 0.15 2.55 16 22 O -0.50 -10.89 12.85 -92.50 -1.19 -12.08 16 23 H 0.07 1.57 6.86 -2.39 -0.02 1.56 16 24 H 0.06 1.60 6.57 -2.38 -0.02 1.58 16 25 H 0.03 0.72 8.12 -2.39 -0.02 0.70 16 26 H 0.08 2.07 7.86 -2.39 -0.02 2.05 16 27 H 0.04 1.01 8.11 -2.38 -0.02 0.99 16 28 H 0.06 2.15 6.60 -2.39 -0.02 2.13 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.06 2.60 8.14 -2.40 -0.02 2.58 16 31 H 0.06 2.55 8.14 -2.40 -0.02 2.53 16 32 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.08 1.61 7.68 -2.39 -0.02 1.59 16 34 H 0.05 0.91 7.86 -2.39 -0.02 0.90 16 35 H 0.14 1.74 8.00 -2.91 -0.02 1.72 16 36 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 39 H 0.40 4.84 9.06 -74.06 -0.67 4.16 16 Total: -1.00 -72.52 339.59 0.52 -72.00 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.36 Total: 15.72 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 4.60 Total: -35.97 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -4.08 Total: -73.92 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -1.19 Total: -12.08 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: -11.21 SS G_CDS: -1.21 Total: -12.42 kcal Total: -72.52 0.52 -72.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072517865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.882 kcal (2) G-P(sol) polarization free energy of solvation -72.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds