Wall clock time and date at job start Tue Mar 31 2020 05:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36012 * 116.99936 * 2 1 4 4 C 1.38507 * 120.08094 * 0.02562 * 3 2 1 5 5 C 1.38285 * 120.01794 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.18247 * 0.02562 * 5 4 3 7 7 C 1.38225 * 120.15880 * 359.97438 * 6 5 4 8 8 C 1.38726 * 119.97943 * 359.97438 * 7 6 5 9 9 N 1.39969 * 120.08704 * 180.02562 * 8 7 6 10 10 C 1.46903 * 110.99734 * 296.04637 * 9 8 7 11 11 C 1.46899 * 110.99880 * 59.99943 * 9 8 7 12 12 C 1.53007 * 109.46753 * 170.00188 * 11 9 8 13 13 C 1.53004 * 109.46755 * 179.97438 * 12 11 9 14 14 S 1.81001 * 109.46912 * 179.97438 * 13 12 11 15 15 C 1.76190 * 100.00149 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99991 * 359.97438 * 15 14 13 17 17 C 1.38804 * 120.00449 * 179.97438 * 15 14 13 18 18 N 1.31626 * 119.99662 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00297 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47176 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47113 * 119.99994 * 19 17 15 22 22 H 1.48496 * 109.47041 * 240.00486 * 19 17 15 23 23 H 1.09000 * 109.47021 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46808 * 299.99239 * 1 2 3 25 25 H 1.08992 * 109.47286 * 59.99128 * 1 2 3 26 26 H 1.07999 * 119.98749 * 0.24626 * 4 3 2 27 27 H 1.07997 * 119.90788 * 179.97438 * 5 4 3 28 28 H 1.07996 * 119.91798 * 179.97438 * 6 5 4 29 29 H 1.07999 * 120.00479 * 180.02562 * 7 6 5 30 30 H 1.08997 * 109.47261 * 60.00291 * 10 9 8 31 31 H 1.09000 * 109.46640 * 180.02562 * 10 9 8 32 32 H 1.09000 * 109.46895 * 299.99579 * 10 9 8 33 33 H 1.08999 * 109.47170 * 289.99800 * 11 9 8 34 34 H 1.08999 * 109.47395 * 50.00244 * 11 9 8 35 35 H 1.08999 * 109.46965 * 299.99737 * 12 11 9 36 36 H 1.08999 * 109.47124 * 59.99891 * 12 11 9 37 37 H 1.08999 * 109.47307 * 299.99697 * 13 12 11 38 38 H 1.09005 * 109.46848 * 59.99994 * 13 12 11 39 39 H 0.96993 * 120.00398 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3746 0.0005 5 6 1.9229 3.6060 0.0011 6 6 3.3034 3.6813 0.0005 7 6 4.0618 2.5257 0.0000 8 6 3.4376 1.2868 0.0005 9 7 4.2034 0.1152 0.0005 10 6 4.9951 0.0038 -1.2319 11 6 5.0659 0.0500 1.1879 12 6 5.6962 -1.3408 1.2846 13 6 6.5950 -1.4084 2.5210 14 16 7.3401 -3.0540 2.6359 15 6 8.2940 -2.8561 4.1040 16 1 8.2851 -1.9134 4.6308 17 6 9.0571 -3.9118 4.5834 18 7 9.0684 -5.0606 3.9411 19 14 10.0690 -3.7018 6.1395 20 1 9.8858 -2.3258 6.6671 21 1 9.6212 -4.6855 7.1577 22 1 11.5040 -3.9271 5.8309 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8898 26 1 0.2152 2.3193 0.0050 27 1 1.3342 4.5114 0.0011 28 1 3.7903 4.6452 0.0005 29 1 5.1401 2.5874 0.0000 30 1 5.6655 0.8595 -1.3118 31 1 5.5802 -0.9155 -1.2060 32 1 4.3265 -0.0157 -2.0926 33 1 5.8523 0.8005 1.1074 34 1 4.4704 0.2420 2.0805 35 1 4.9098 -2.0913 1.3651 36 1 6.2917 -1.5327 0.3921 37 1 7.3814 -0.6580 2.4401 38 1 5.9998 -1.2163 3.4138 39 1 9.6019 -5.7983 4.2758 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074981980.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:22 Heat of formation + Delta-G solvation = -11.650558 kcal Electronic energy + Delta-G solvation = -19091.057534 eV Core-core repulsion = 16125.230806 eV Total energy + Delta-G solvation = -2965.826728 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.51899 -38.19211 -36.67503 -32.94361 -32.38081 -30.33799 -29.78952 -27.34917 -26.83500 -25.58799 -24.53367 -22.34489 -21.58799 -20.36594 -18.27143 -17.43456 -16.51620 -16.34012 -15.89704 -15.13961 -15.05346 -14.77027 -14.68923 -14.40187 -13.98732 -13.83203 -13.14768 -12.86787 -12.67494 -12.38214 -12.06995 -11.89525 -11.78946 -11.61505 -11.29205 -11.24167 -11.09151 -11.04169 -10.74267 -10.58720 -10.20957 -9.52633 -9.02988 -9.01930 -8.40281 -8.26046 -8.21911 -6.47776 -6.19132 -3.88644 1.06950 1.28286 3.19370 3.23383 3.24822 3.32405 3.52585 3.58967 3.90316 4.26394 4.63572 4.76307 4.89249 4.97914 4.98950 5.16633 5.17757 5.21024 5.31708 5.33102 5.38986 5.42849 5.56210 5.57363 5.67669 5.80888 5.89515 6.00600 6.06278 6.12601 6.20444 6.31279 6.42239 6.56591 6.66948 6.82218 7.03589 7.07385 7.56366 7.64588 8.40750 9.27222 10.89157 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028440 B = 0.003030 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.295190 B = 9237.690196 C = 9508.128585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.292 6.292 3 C 0.150 3.850 4 C -0.209 4.209 5 C -0.086 4.086 6 C -0.151 4.151 7 C -0.111 4.111 8 C 0.062 3.938 9 N -0.495 5.495 10 C 0.027 3.973 11 C 0.066 3.934 12 C -0.093 4.093 13 C -0.112 4.112 14 S -0.132 6.132 15 C -0.515 4.515 16 H 0.072 0.928 17 C 0.070 3.930 18 N -0.870 5.870 19 Si 0.918 3.082 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.100 0.900 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.129 0.871 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.027 0.973 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.849 16.150 -10.118 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.204 6.204 3 C 0.103 3.897 4 C -0.228 4.228 5 C -0.104 4.104 6 C -0.170 4.170 7 C -0.131 4.131 8 C -0.033 4.033 9 N -0.216 5.216 10 C -0.119 4.119 11 C -0.061 4.061 12 C -0.132 4.132 13 C -0.261 4.261 14 S 0.096 5.904 15 C -0.663 4.663 16 H 0.090 0.910 17 C -0.139 4.139 18 N -0.506 5.506 19 Si 0.744 3.256 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 H 0.118 0.882 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.147 0.853 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.045 0.955 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.111 14.420 -10.780 24.160 hybrid contribution 1.088 2.031 1.799 2.923 sum -15.023 16.451 -8.981 24.021 Atomic orbital electron populations 1.23080 0.79223 1.04008 1.00839 1.86306 1.20282 1.25926 1.87850 1.18955 0.90934 0.84478 0.95349 1.21188 0.99991 0.92196 1.09448 1.20924 0.94593 0.96891 0.98033 1.20928 0.93856 0.98105 1.04107 1.21542 1.00303 0.92193 0.99033 1.18169 0.90100 0.89510 1.05542 1.59553 1.25513 1.33298 1.03234 1.22491 0.96628 1.01587 0.91223 1.22267 0.94255 0.97898 0.91725 1.21290 0.98594 0.95646 0.97673 1.23230 1.00538 1.03117 0.99247 1.84629 1.57958 1.11063 1.36707 1.22743 1.31429 1.01496 1.10658 0.90957 1.25016 0.96423 0.94557 0.97856 1.70032 1.39222 1.02481 1.38820 0.86119 0.79424 0.78346 0.81663 1.19625 1.20585 1.20606 0.88179 0.92914 0.93013 0.85320 0.85902 0.86012 0.85583 0.95462 0.90057 0.91630 0.94694 0.90888 0.90601 0.91516 0.92372 0.92152 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.29 -3.74 10.24 -19.78 -0.20 -3.94 16 3 C 0.15 1.88 6.70 -39.08 -0.26 1.62 16 4 C -0.21 -2.08 9.04 -39.47 -0.36 -2.44 16 5 C -0.09 -0.78 10.04 -39.56 -0.40 -1.18 16 6 C -0.15 -1.47 10.04 -39.58 -0.40 -1.86 16 7 C -0.11 -1.26 8.66 -39.41 -0.34 -1.60 16 8 C 0.06 0.81 4.70 -83.56 -0.39 0.42 16 9 N -0.50 -7.04 4.49 -178.78 -0.80 -7.85 16 10 C 0.03 0.34 9.19 60.07 0.55 0.89 16 11 C 0.07 0.99 4.54 -3.82 -0.02 0.97 16 12 C -0.09 -1.63 5.15 -26.73 -0.14 -1.76 16 13 C -0.11 -2.35 5.67 37.16 0.21 -2.14 16 14 S -0.13 -3.54 21.44 -107.50 -2.30 -5.84 16 15 C -0.51 -15.06 9.50 30.94 0.29 -14.76 16 16 H 0.07 2.05 7.80 -52.48 -0.41 1.65 16 17 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 18 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 19 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 25 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 26 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 27 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 28 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.13 1.34 7.14 -52.49 -0.37 0.97 16 30 H 0.03 0.31 7.35 -51.93 -0.38 -0.07 16 31 H 0.08 1.03 6.30 -51.93 -0.33 0.71 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.49 7.48 -51.93 -0.39 0.11 16 34 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.07 1.14 6.47 -51.93 -0.34 0.81 16 37 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 38 H 0.06 1.26 8.14 -51.91 -0.42 0.84 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -32.93 336.16 -8.74 -41.67 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.86 Total: -1.57 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -0.35 Total: -18.73 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: -0.07 Total: -33.47 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.20 Total: -3.94 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.93 -8.74 -41.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981980.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.021 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds