Wall clock time and date at job start Tue Mar 31 2020 05:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47303 * 2 1 4 4 O 1.42901 * 109.47535 * 120.00045 * 2 1 3 5 5 C 1.35902 * 117.00057 * 276.62485 * 4 2 1 6 6 C 1.38768 * 120.04182 * 178.06882 * 5 4 2 7 7 C 1.38132 * 119.99388 * 179.97438 * 6 5 4 8 8 C 1.38250 * 120.07946 * 359.97438 * 7 6 5 9 9 C 1.38477 * 120.08638 * 0.04287 * 8 7 6 10 10 F 1.35097 * 119.99894 * 179.97438 * 9 8 7 11 11 C 1.38385 * 120.00203 * 359.69859 * 9 8 7 12 12 C 1.50700 * 109.47083 * 240.00141 * 2 1 3 13 13 O 1.21280 * 119.99903 * 254.56456 * 12 2 1 14 14 N 1.34781 * 120.00008 * 74.56756 * 12 2 1 15 15 C 1.46498 * 119.99901 * 5.22500 * 14 12 2 16 16 C 1.46498 * 119.99868 * 185.22894 * 14 12 2 17 17 C 1.50697 * 109.47320 * 89.99715 * 16 14 12 18 18 H 1.08000 * 120.00070 * 359.97438 * 17 16 14 19 19 C 1.37878 * 120.00114 * 179.97438 * 17 16 14 20 20 N 1.31517 * 119.99768 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99983 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47468 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47394 * 120.00425 * 21 19 17 24 24 H 1.48503 * 109.46957 * 240.00343 * 21 19 17 25 25 H 1.08993 * 109.46989 * 55.18923 * 1 2 3 26 26 H 1.09001 * 109.46703 * 295.18789 * 1 2 3 27 27 H 1.09000 * 109.47122 * 175.19262 * 1 2 3 28 28 H 1.07998 * 120.00153 * 0.02562 * 6 5 4 29 29 H 1.08000 * 119.95687 * 180.02562 * 7 6 5 30 30 H 1.08001 * 119.95609 * 180.02562 * 8 7 6 31 31 H 1.07999 * 120.04069 * 180.27227 * 11 9 8 32 32 H 1.08991 * 109.47441 * 91.99113 * 15 14 12 33 33 H 1.09002 * 109.47319 * 211.99581 * 15 14 12 34 34 H 1.09008 * 109.47307 * 331.99314 * 15 14 12 35 35 H 1.09003 * 109.46569 * 209.99645 * 16 14 12 36 36 H 1.08998 * 109.46887 * 329.99344 * 16 14 12 37 37 H 0.97002 * 119.99461 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0065 -0.6736 1.1667 5 6 2.0805 0.0539 2.3123 6 6 2.4963 -0.5476 3.4916 7 6 2.5717 0.1929 4.6552 8 6 2.2337 1.5334 4.6466 9 6 1.8180 2.1369 3.4716 10 9 1.4877 3.4469 3.4653 11 6 1.7463 1.3997 2.3027 12 6 2.0323 -0.7104 -1.2305 13 8 2.4980 -1.8264 -1.1387 14 7 1.9641 -0.1054 -2.4329 15 6 1.5089 1.2837 -2.5292 16 6 2.3452 -0.8370 -3.6436 17 6 1.1364 -1.5372 -4.2088 18 1 0.1800 -1.4467 -3.7153 19 6 1.2514 -2.2934 -5.3560 20 7 2.4161 -2.4040 -5.9567 21 14 -0.2468 -3.1620 -6.0562 22 1 -1.4269 -2.8819 -5.1993 23 1 -0.5061 -2.6696 -7.4330 24 1 0.0016 -4.6256 -6.0925 25 1 -0.3633 0.5866 -0.8437 26 1 -0.3633 0.4374 0.9300 27 1 -0.3633 -1.0240 -0.0861 28 1 2.7618 -1.5944 3.4995 29 1 2.8958 -0.2758 5.5727 30 1 2.2938 2.1106 5.5574 31 1 1.4264 1.8708 1.3851 32 1 2.3684 1.9521 -2.4800 33 1 0.9880 1.4307 -3.4754 34 1 0.8312 1.5021 -1.7038 35 1 2.7384 -0.1379 -4.3818 36 1 3.1098 -1.5737 -3.3974 37 1 2.4971 -2.9363 -6.7635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078253144.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:33 Heat of formation + Delta-G solvation = -84.222107 kcal Electronic energy + Delta-G solvation = -21742.056621 eV Core-core repulsion = 18206.869778 eV Total energy + Delta-G solvation = -3535.186843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.11436 -40.59853 -38.95927 -37.21646 -34.95201 -32.90363 -31.84492 -30.85238 -29.76687 -27.82337 -26.13467 -24.63051 -23.38707 -22.75050 -21.82730 -18.91481 -18.75089 -16.93319 -16.60695 -16.54088 -16.35749 -15.95351 -15.70823 -15.33886 -15.19465 -14.58407 -14.31479 -14.22032 -13.74137 -13.27894 -13.06767 -12.66435 -12.48628 -12.17974 -12.12807 -11.95884 -11.78625 -11.67245 -11.31950 -11.26138 -10.96798 -10.86935 -10.63543 -10.20867 -9.67830 -9.17178 -8.98567 -8.48860 -8.40877 -7.76661 -6.09581 -4.15023 0.92198 1.08251 2.78108 3.17916 3.26843 3.34939 3.38331 3.39533 3.94863 4.01546 4.39646 4.51544 4.62300 4.75235 4.83660 4.90467 4.97726 5.08802 5.24683 5.27601 5.37527 5.58031 5.63101 5.80342 5.80853 5.83523 6.00888 6.06338 6.10642 6.18113 6.48688 6.91672 7.22747 7.36300 7.44156 7.86341 8.15802 8.24466 8.79986 8.94925 9.50343 10.98592 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033090 B = 0.003653 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.971325 B = 7664.055428 C = 7918.030246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.062 3.938 3 H 0.091 0.909 4 O -0.276 6.276 5 C 0.168 3.832 6 C -0.163 4.163 7 C -0.051 4.051 8 C -0.200 4.200 9 C 0.139 3.861 10 F -0.138 7.138 11 C -0.254 4.254 12 C 0.512 3.488 13 O -0.518 6.518 14 N -0.596 5.596 15 C 0.072 3.928 16 C 0.245 3.755 17 C -0.530 4.530 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.893 5.893 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.047 0.953 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 10.479 18.090 21.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.002 3.998 3 H 0.109 0.891 4 O -0.187 6.187 5 C 0.121 3.879 6 C -0.181 4.181 7 C -0.069 4.069 8 C -0.219 4.219 9 C 0.120 3.880 10 F -0.117 7.117 11 C -0.273 4.273 12 C 0.296 3.704 13 O -0.393 6.393 14 N -0.330 5.330 15 C -0.072 4.072 16 C 0.127 3.873 17 C -0.569 4.569 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.532 5.532 21 Si 0.727 3.273 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.208 1.208 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.158 0.842 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.809 9.632 17.896 20.404 hybrid contribution -0.991 0.103 -0.631 1.179 sum -2.800 9.736 17.266 20.018 Atomic orbital electron populations 1.22334 0.92607 1.04917 1.03366 1.22469 0.95979 0.96924 0.84382 0.89105 1.86303 1.79697 1.37560 1.15160 1.18881 0.92771 0.89068 0.87142 1.20577 1.05726 1.01762 0.90076 1.20801 0.95808 0.92622 0.97656 1.21017 1.06985 0.96443 0.97445 1.17373 0.98449 0.77967 0.94258 1.91503 1.89978 1.32937 1.97268 1.21237 1.12209 0.94629 0.99250 1.19660 0.80341 0.86729 0.83658 1.90708 1.44301 1.18955 1.85333 1.48060 1.64627 1.12781 1.07489 1.21855 0.99038 0.83067 1.03205 1.19366 0.96755 0.91981 0.79212 1.21458 0.95381 1.30583 1.09474 0.92295 1.24944 0.96263 0.96201 0.96676 1.69944 1.23291 1.40381 1.19544 0.86424 0.82664 0.79555 0.78666 1.19778 1.20913 1.20809 0.89636 0.91205 0.90332 0.84219 0.84292 0.84761 0.83965 0.93328 0.90221 0.92213 0.94611 0.93542 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 8.94 37.16 0.33 -1.99 16 2 C 0.06 0.97 1.80 -27.88 -0.05 0.92 16 3 H 0.09 1.17 5.16 -51.93 -0.27 0.90 16 4 O -0.28 -4.54 9.38 -38.91 -0.37 -4.91 16 5 C 0.17 2.24 6.52 -39.23 -0.26 1.99 16 6 C -0.16 -1.84 9.99 -39.42 -0.39 -2.23 16 7 C -0.05 -0.45 10.04 -39.62 -0.40 -0.85 16 8 C -0.20 -1.87 10.02 -39.49 -0.40 -2.27 16 9 C 0.14 1.55 7.30 -39.44 -0.29 1.26 16 10 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 11 C -0.25 -3.01 8.30 -39.37 -0.33 -3.34 16 12 C 0.51 10.78 6.96 -10.98 -0.08 10.71 16 13 O -0.52 -13.44 16.12 -13.92 -0.22 -13.67 16 14 N -0.60 -12.38 2.86 -182.96 -0.52 -12.90 16 15 C 0.07 1.08 9.97 59.85 0.60 1.68 16 16 C 0.25 6.33 5.21 -5.20 -0.03 6.31 16 17 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 18 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 21 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H 0.09 1.03 6.16 -51.93 -0.32 0.71 16 26 H 0.07 0.77 7.30 -51.93 -0.38 0.39 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 30 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.14 1.53 5.70 -52.49 -0.30 1.23 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 34 H 0.06 0.71 4.49 -51.92 -0.23 0.47 16 35 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 36 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 318.57 15.07 4.80 4.80 Total: -1.00 -33.39 318.57 -6.64 -40.03 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -4.38 Total: -1.56 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.70 Total: -1.26 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.21 Total: -38.43 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.59 Total: -18.57 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.39 -6.64 -40.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078253144.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.195 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds