Wall clock time and date at job start Tue Mar 31 2020 05:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46505 * 109.47033 * 2 1 4 4 C 1.37090 * 120.00368 * 264.77128 * 3 2 1 5 5 H 1.08001 * 120.00021 * 138.85084 * 4 3 2 6 6 C 1.38953 * 120.00147 * 318.85313 * 4 3 2 7 7 N 1.31412 * 119.99791 * 341.83189 * 6 4 3 8 8 Si 1.86803 * 120.00082 * 161.82523 * 6 4 3 9 9 H 1.48504 * 109.46889 * 90.00263 * 8 6 4 10 10 H 1.48496 * 109.47042 * 210.00040 * 8 6 4 11 11 H 1.48500 * 109.47216 * 330.00081 * 8 6 4 12 12 C 1.34782 * 119.99828 * 84.77401 * 3 2 1 13 13 O 1.21288 * 119.99794 * 179.97438 * 12 3 2 14 14 C 1.50700 * 119.99658 * 359.97438 * 12 3 2 15 15 C 1.53005 * 109.46737 * 180.02562 * 14 12 3 16 16 C 1.53002 * 109.46803 * 180.02562 * 15 14 12 17 17 C 1.50708 * 109.46997 * 179.97438 * 16 15 14 18 18 C 1.33387 * 125.20544 * 89.99523 * 17 16 15 19 19 C 1.38414 * 114.92317 * 179.97438 * 18 17 16 20 20 C 1.33400 * 114.92055 * 0.02562 * 19 18 17 21 21 C 1.50699 * 125.20154 * 180.02562 * 20 19 18 22 22 S 1.75883 * 125.19834 * 269.97429 * 17 16 15 23 23 H 1.08999 * 109.47348 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47159 * 299.99743 * 1 2 3 25 25 H 1.08997 * 109.47433 * 59.99573 * 1 2 3 26 26 H 1.09004 * 109.47068 * 240.00764 * 2 1 3 27 27 H 1.08997 * 109.47433 * 120.00427 * 2 1 3 28 28 H 0.97000 * 119.99772 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47379 * 60.00104 * 14 12 3 30 30 H 1.09001 * 109.47482 * 299.99827 * 14 12 3 31 31 H 1.08994 * 109.47639 * 60.00118 * 15 14 12 32 32 H 1.09000 * 109.46865 * 299.99422 * 15 14 12 33 33 H 1.09000 * 109.47537 * 59.99615 * 16 15 14 34 34 H 1.09001 * 109.47258 * 299.99379 * 16 15 14 35 35 H 1.08001 * 122.53492 * 0.25083 * 18 17 16 36 36 H 1.07999 * 122.54549 * 180.02562 * 19 18 17 37 37 H 1.08996 * 109.47090 * 89.99951 * 21 20 19 38 38 H 1.09003 * 109.46500 * 209.99798 * 21 20 19 39 39 H 1.08995 * 109.46893 * 329.99516 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3488 1.9915 -1.1823 5 1 2.0741 3.0219 -1.3533 6 6 3.0370 1.2844 -2.1605 7 7 3.6790 0.1819 -1.8452 8 14 3.0497 1.9008 -3.9239 9 1 4.2053 2.8123 -4.1213 10 1 3.1657 0.7465 -4.8509 11 1 1.7881 2.6335 -4.2012 12 6 2.1426 2.0520 1.1624 13 8 2.5473 3.1954 1.1624 14 6 1.7788 1.3813 2.4620 15 6 2.0099 2.3542 3.6201 16 6 1.6411 1.6731 4.9395 17 6 1.8692 2.6311 6.0804 18 6 0.9624 3.4818 6.5632 19 6 1.4004 4.2651 7.6170 20 6 2.6632 4.0509 7.9897 21 6 3.3734 4.7713 9.1066 22 16 3.3719 2.7979 6.9790 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 4.1597 -0.3115 -2.5280 29 1 2.4002 0.4966 2.6007 30 1 0.7293 1.0881 2.4382 31 1 1.3882 3.2387 3.4812 32 1 3.0593 2.6478 3.6441 33 1 2.2631 0.7887 5.0783 34 1 0.5917 1.3791 4.9159 35 1 -0.0392 3.5508 6.1651 36 1 0.7677 4.9945 8.1009 37 1 3.2270 4.2282 10.0402 38 1 4.4387 4.8283 8.8826 39 1 2.9684 5.7784 9.2047 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079441783.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:41 Heat of formation + Delta-G solvation = -22.952368 kcal Electronic energy + Delta-G solvation = -19242.452724 eV Core-core repulsion = 16276.135913 eV Total energy + Delta-G solvation = -2966.316812 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.65202 -38.05438 -35.19391 -34.42499 -32.14266 -31.53639 -29.38951 -28.62860 -25.59280 -24.30403 -22.92804 -22.22924 -21.31098 -18.87252 -18.55313 -16.91221 -16.67738 -15.75475 -15.25120 -15.20309 -14.66289 -14.17313 -14.06097 -13.58589 -13.35616 -12.99595 -12.89599 -12.84778 -12.54617 -12.17749 -11.93348 -11.75259 -11.65473 -11.26713 -11.13387 -11.10060 -10.95444 -10.78564 -10.68592 -10.44524 -10.31915 -10.19405 -10.01022 -8.87663 -8.44673 -8.41217 -8.28479 -7.36035 -6.27561 -3.95464 1.00567 1.61841 2.02332 2.75291 3.20316 3.28071 3.33146 4.00498 4.20411 4.72195 4.79385 4.99295 5.07061 5.11504 5.21290 5.32294 5.42504 5.48605 5.57638 5.70782 5.78882 5.83800 5.89281 5.93874 6.02603 6.14943 6.20325 6.25439 6.30426 6.42708 6.50504 6.56411 6.65001 6.75415 6.90801 7.25368 7.62637 8.35734 8.58494 9.26320 9.46807 10.10103 10.77796 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032823 B = 0.003204 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.857163 B = 8736.367600 C = 9043.694223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.445 5.445 4 C -0.308 4.308 5 H 0.086 0.914 6 C 0.037 3.963 7 N -0.873 5.873 8 Si 0.916 3.084 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.462 3.538 13 O -0.582 6.582 14 C -0.135 4.135 15 C -0.093 4.093 16 C -0.052 4.052 17 C -0.158 4.158 18 C -0.145 4.145 19 C -0.136 4.136 20 C -0.193 4.193 21 C -0.080 4.080 22 S 0.094 5.906 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.048 0.952 28 H 0.266 0.734 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.659 0.473 17.150 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.020 4.020 3 N -0.165 5.165 4 C -0.436 4.436 5 H 0.104 0.896 6 C -0.167 4.167 7 N -0.511 5.511 8 Si 0.743 3.257 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.194 1.194 12 C 0.250 3.750 13 O -0.465 6.465 14 C -0.176 4.176 15 C -0.131 4.131 16 C -0.091 4.091 17 C -0.276 4.276 18 C -0.174 4.174 19 C -0.166 4.166 20 C -0.310 4.310 21 C -0.138 4.138 22 S 0.358 5.642 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.120 0.880 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.925 0.194 16.964 17.215 hybrid contribution -1.347 0.725 -0.871 1.760 sum -4.271 0.919 16.092 16.675 Atomic orbital electron populations 1.22225 0.98342 1.00263 1.01509 1.21430 0.91514 0.85733 1.03364 1.43469 1.56348 1.11723 1.04926 1.19352 1.34692 0.98445 0.91113 0.89624 1.25413 0.94143 0.96583 1.00512 1.69928 1.29654 1.17640 1.33917 0.86103 0.78947 0.78306 0.82338 1.20307 1.20875 1.19447 1.20403 0.81733 0.87865 0.84976 1.90513 1.50104 1.18910 1.86982 1.21657 1.02186 0.99422 0.94307 1.21289 1.02940 0.98219 0.90699 1.20289 1.02484 0.95601 0.90771 1.24544 0.96292 1.04076 1.02654 1.20055 1.01050 0.97817 0.98522 1.20031 0.95239 1.02323 0.99053 1.24437 0.98423 1.04103 1.04013 1.20292 0.99638 0.99343 0.94548 1.84287 1.15339 1.36338 1.28221 0.93176 0.93836 0.92493 0.88004 0.93370 0.92369 0.90254 0.90458 0.91244 0.91320 0.90854 0.90041 0.84441 0.84733 0.91042 0.91435 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 10.15 37.15 0.38 -2.56 16 2 C 0.10 2.25 5.41 -4.04 -0.02 2.23 16 3 N -0.44 -11.41 2.50 -114.81 -0.29 -11.69 16 4 C -0.31 -8.69 8.84 -14.94 -0.13 -8.82 16 5 H 0.09 2.53 7.82 -52.49 -0.41 2.12 16 6 C 0.04 1.01 4.95 -17.47 -0.09 0.92 16 7 N -0.87 -23.94 11.61 55.50 0.64 -23.30 16 8 Si 0.92 20.92 29.59 -169.99 -5.03 15.89 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 12 C 0.46 11.45 7.59 -10.98 -0.08 11.36 16 13 O -0.58 -16.61 15.89 5.55 0.09 -16.52 16 14 C -0.14 -2.47 4.31 -27.88 -0.12 -2.59 16 15 C -0.09 -1.56 4.49 -26.73 -0.12 -1.68 16 16 C -0.05 -0.68 5.71 -27.88 -0.16 -0.84 16 17 C -0.16 -2.09 5.76 -36.00 -0.21 -2.30 16 18 C -0.14 -1.79 10.05 -41.21 -0.41 -2.20 16 19 C -0.14 -1.55 10.05 -41.21 -0.41 -1.96 16 20 C -0.19 -2.17 6.51 -36.00 -0.23 -2.41 16 21 C -0.08 -0.65 10.38 36.01 0.37 -0.28 16 22 S 0.09 1.18 23.31 -107.50 -2.51 -1.33 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.72 6.60 -51.93 -0.34 0.37 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.10 2.44 5.76 -51.93 -0.30 2.15 16 27 H 0.05 0.95 6.66 -51.93 -0.35 0.60 16 28 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.08 1.36 7.41 -51.93 -0.38 0.98 16 30 H 0.08 1.24 6.54 -51.93 -0.34 0.90 16 31 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -31.93 336.82 -9.16 -41.09 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.90 Total: 1.91 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -1.24 Total: -11.13 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.36 Total: -35.00 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.09 Total: -16.52 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.51 Total: -1.33 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.93 -9.16 -41.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079441783.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.141 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds