Wall clock time and date at job start Tue Mar 31 2020 05:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46491 * 109.47664 * 2 1 4 4 C 1.46506 * 119.99970 * 270.00349 * 3 2 1 5 5 C 1.50703 * 109.46928 * 269.99565 * 4 3 2 6 6 H 1.08003 * 119.99852 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99913 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00252 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99851 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47139 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46641 * 120.00234 * 9 7 5 12 12 H 1.48497 * 109.47168 * 240.00488 * 9 7 5 13 13 C 1.34779 * 120.00292 * 89.99787 * 3 2 1 14 14 O 1.21283 * 119.99998 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99838 * 359.97438 * 13 3 2 16 16 O 1.42895 * 109.46892 * 179.97438 * 15 13 3 17 17 C 1.35951 * 116.99758 * 179.97438 * 16 15 13 18 18 C 1.38708 * 120.03040 * 0.28885 * 17 16 15 19 19 C 1.38147 * 119.96935 * 180.25012 * 18 17 16 20 20 C 1.38455 * 120.02958 * 359.46222 * 19 18 17 21 21 F 1.35101 * 119.97206 * 180.29906 * 20 19 18 22 22 C 1.38452 * 120.06193 * 0.28172 * 20 19 18 23 23 C 1.38156 * 120.03063 * 359.97438 * 22 20 19 24 24 H 1.09004 * 109.47290 * 300.00227 * 1 2 3 25 25 H 1.09002 * 109.47020 * 60.00021 * 1 2 3 26 26 H 1.08997 * 109.47490 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47059 * 239.99288 * 2 1 3 28 28 H 1.09002 * 109.47020 * 119.99979 * 2 1 3 29 29 H 1.09003 * 109.46917 * 29.99280 * 4 3 2 30 30 H 1.08998 * 109.47401 * 149.99544 * 4 3 2 31 31 H 0.96998 * 119.99815 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.46403 * 60.00348 * 15 13 3 33 33 H 1.08995 * 109.47035 * 300.00415 * 15 13 3 34 34 H 1.07998 * 120.01328 * 0.02562 * 18 17 16 35 35 H 1.08002 * 119.98838 * 179.74746 * 19 18 17 36 36 H 1.07997 * 119.98751 * 179.97438 * 22 20 19 37 37 H 1.07999 * 120.02057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0962 7 6 4.1492 2.3894 -2.8780 8 7 3.3492 3.1255 -3.6182 9 14 5.9137 2.0964 -3.4169 10 1 6.6012 1.2412 -2.4164 11 1 5.9215 1.4168 -4.7372 12 1 6.6206 3.3977 -3.5257 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1601 1.1671 15 6 1.9913 1.3063 2.4723 16 8 2.3015 2.1816 3.5584 17 6 2.1274 1.6921 4.8147 18 6 1.6731 0.3943 4.9972 19 6 1.4916 -0.1002 6.2743 20 6 1.7736 0.6953 7.3718 21 9 1.6014 0.2086 8.6203 22 6 2.2321 1.9892 7.1912 23 6 2.4095 2.4880 5.9151 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5140 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5818 1.6876 -2.0284 30 1 2.0957 3.1409 -1.1385 31 1 3.6751 3.5153 -4.4444 32 1 2.6211 0.4186 2.5302 33 1 0.9432 1.0126 2.5298 34 1 1.4579 -0.2282 4.1412 35 1 1.1340 -1.1093 6.4167 36 1 2.4512 2.6088 8.0481 37 1 2.7675 3.4972 5.7743 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080060124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:01 Heat of formation + Delta-G solvation = -90.997607 kcal Electronic energy + Delta-G solvation = -21319.817188 eV Core-core repulsion = 17784.336538 eV Total energy + Delta-G solvation = -3535.480651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.98821 -40.38102 -38.97721 -37.13090 -35.38005 -32.88291 -31.51988 -30.27679 -29.99432 -28.57473 -26.51631 -23.51750 -23.14246 -22.76631 -22.01697 -18.72029 -18.56091 -17.51922 -16.92165 -16.55784 -16.18390 -16.03890 -15.66299 -15.47031 -14.84073 -14.44883 -14.21545 -13.87559 -13.73284 -13.47477 -13.15400 -13.07054 -12.69318 -12.40050 -12.10857 -12.10227 -11.70946 -11.29793 -11.08264 -11.04426 -10.94198 -10.75389 -10.60543 -10.18113 -9.68020 -9.42159 -9.03467 -8.48169 -8.26152 -7.80022 -6.09051 -4.14092 0.92932 1.02440 2.79891 3.19814 3.27490 3.35621 3.37145 3.39757 3.96338 4.11763 4.40709 4.45241 4.54608 4.78501 4.86973 4.97967 5.08685 5.12310 5.24917 5.26311 5.35910 5.50269 5.64264 5.65309 5.87946 5.90022 5.94355 6.03444 6.12181 6.36968 6.47849 6.92431 7.22146 7.35868 7.44621 7.86971 8.16648 8.25062 8.81150 8.95742 9.51284 10.99153 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027135 B = 0.003440 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.628259 B = 8137.901485 C = 8593.626642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.517 6.517 15 C 0.039 3.961 16 O -0.283 6.283 17 C 0.129 3.871 18 C -0.186 4.186 19 C -0.111 4.111 20 C 0.050 3.950 21 F -0.144 7.144 22 C -0.112 4.112 23 C -0.123 4.123 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.246 -8.681 17.051 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.292 3.708 14 O -0.392 6.392 15 C -0.040 4.040 16 O -0.194 6.194 17 C 0.082 3.918 18 C -0.205 4.205 19 C -0.130 4.130 20 C 0.031 3.969 21 F -0.123 7.123 22 C -0.130 4.130 23 C -0.141 4.141 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.969 -7.772 16.826 19.471 hybrid contribution 0.809 -0.607 -0.243 1.040 sum -5.160 -8.379 16.582 19.282 Atomic orbital electron populations 1.22248 0.96548 1.01647 1.02522 1.21491 0.93692 0.84045 1.02937 1.48206 1.63894 1.13348 1.07174 1.19336 0.96496 0.93724 0.77542 1.21463 0.96859 1.32089 1.06346 0.92333 1.24936 0.97939 0.94836 0.96360 1.69939 1.35651 1.33358 1.14313 0.86429 0.84511 0.78117 0.78294 1.19785 1.20942 1.20812 1.19669 0.79770 0.87156 0.84239 1.90727 1.44286 1.17525 1.86662 1.22783 1.01762 0.93448 0.85967 1.86236 1.81719 1.40371 1.11106 1.19178 0.95078 0.92225 0.85290 1.21171 1.05797 0.95497 0.97997 1.20910 1.00636 1.00326 0.91088 1.17563 1.06055 0.93792 0.79501 1.91479 1.93682 1.88207 1.38948 1.20949 1.00089 0.94200 0.97800 1.20346 1.03559 1.01091 0.89152 0.93140 0.91718 0.91915 0.89412 0.91933 0.94636 0.93713 0.92697 0.89399 0.89463 0.84344 0.84517 0.84095 0.83824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.24 37.16 0.38 -1.67 16 2 C 0.10 1.49 5.93 -4.05 -0.02 1.46 16 3 N -0.59 -11.92 2.46 -175.06 -0.43 -12.35 16 4 C 0.25 6.28 5.16 -5.19 -0.03 6.25 16 5 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 9 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.51 10.37 7.75 -10.98 -0.09 10.28 16 14 O -0.52 -13.24 16.08 -14.36 -0.23 -13.48 16 15 C 0.04 0.57 3.77 36.01 0.14 0.70 16 16 O -0.28 -4.53 9.67 -39.50 -0.38 -4.91 16 17 C 0.13 1.65 6.69 -39.23 -0.26 1.39 16 18 C -0.19 -1.94 9.04 -39.44 -0.36 -2.30 16 19 C -0.11 -1.07 10.02 -39.53 -0.40 -1.47 16 20 C 0.05 0.53 7.30 -39.42 -0.29 0.24 16 21 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 22 C -0.11 -1.12 10.02 -39.53 -0.40 -1.51 16 23 C -0.12 -1.40 9.99 -39.44 -0.39 -1.80 16 24 H 0.05 0.57 7.22 -51.93 -0.37 0.19 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 28 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 29 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.09 1.06 6.91 -51.93 -0.36 0.70 16 33 H 0.09 1.00 6.71 -51.93 -0.35 0.65 16 34 H 0.14 1.16 6.30 -52.49 -0.33 0.83 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 324.08 15.07 4.88 4.88 Total: -1.00 -33.46 324.08 -7.17 -40.63 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.63 Total: -2.55 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.13 Total: -1.80 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.31 Total: -37.81 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.61 Total: -18.39 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.46 -7.17 -40.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080060124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.372 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds