Wall clock time and date at job start Tue Mar 31 2020 05:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47235 * 59.99855 * 9 7 5 11 11 H 1.48500 * 109.47168 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47142 * 299.99797 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 O 1.42903 * 109.46878 * 179.97438 * 15 13 3 17 17 C 1.35904 * 116.99628 * 179.97438 * 16 15 13 18 18 C 1.38771 * 120.04254 * 359.72712 * 17 16 15 19 19 C 1.38137 * 119.99170 * 179.74512 * 18 17 16 20 20 C 1.38249 * 120.07851 * 0.52965 * 19 18 17 21 21 C 1.38476 * 120.08973 * 359.74253 * 20 19 18 22 22 F 1.35096 * 120.00395 * 179.97438 * 21 20 19 23 23 C 1.38388 * 119.99948 * 359.97438 * 21 20 19 24 24 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 26 26 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 27 27 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 28 28 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 29 29 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 30 30 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 31 31 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 33 33 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 34 34 H 1.07997 * 120.00380 * 359.97438 * 18 17 16 35 35 H 1.07994 * 119.95751 * 180.27410 * 19 18 17 36 36 H 1.07999 * 119.95718 * 179.76792 * 20 19 18 37 37 H 1.08004 * 120.03532 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.1403 0.6387 -3.5947 11 1 6.1604 2.7947 -4.7040 12 1 6.8411 2.6188 -2.3829 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 8 2.3022 2.1813 3.5585 17 6 2.1289 1.6916 4.8143 18 6 1.6645 0.3967 4.9971 19 6 1.4938 -0.1018 6.2740 20 6 1.7747 0.6915 7.3708 21 6 2.2329 1.9860 7.1923 22 9 2.5063 2.7598 8.2654 23 6 2.4107 2.4870 5.9146 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.5818 1.6876 -2.0283 30 1 2.0956 3.1410 -1.1384 31 1 3.6747 3.5148 -4.4447 32 1 0.9443 1.0114 2.5302 33 1 2.6227 0.4186 2.5299 34 1 1.4401 -0.2224 4.1411 35 1 1.1366 -1.1111 6.4156 36 1 1.6369 0.3010 8.3683 37 1 2.7685 3.4964 5.7747 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080060365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:03 Heat of formation + Delta-G solvation = -90.788789 kcal Electronic energy + Delta-G solvation = -21355.789455 eV Core-core repulsion = 17820.317860 eV Total energy + Delta-G solvation = -3535.471596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.10278 -40.39538 -38.97566 -37.18035 -35.38526 -32.88217 -31.26416 -30.25216 -30.07738 -28.79293 -26.53291 -23.26962 -23.15277 -22.97097 -21.98272 -18.78285 -18.69544 -16.96501 -16.59805 -16.44965 -16.42231 -16.21463 -15.74467 -15.64625 -15.33046 -14.51771 -14.22710 -14.00421 -13.76848 -13.49787 -13.07643 -12.77545 -12.63180 -12.16304 -12.10108 -12.05264 -11.73544 -11.31099 -11.25449 -11.11591 -10.97554 -10.77627 -10.58415 -10.17862 -9.71382 -9.10594 -9.03789 -8.48694 -8.47073 -7.80313 -6.08429 -4.13682 0.90410 1.08183 2.70818 3.19368 3.29988 3.34826 3.37480 3.38769 3.88018 4.19280 4.41303 4.50229 4.72745 4.78257 4.81934 4.95431 5.07950 5.13266 5.18063 5.24817 5.26687 5.50068 5.64313 5.71351 5.85877 5.89641 6.00204 6.08284 6.12174 6.36902 6.48173 6.92181 7.19602 7.35968 7.44273 7.87207 8.16970 8.24871 8.80938 8.95463 9.51551 10.99725 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024424 B = 0.003581 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.134245 B = 7816.768955 C = 8414.511734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.516 6.516 15 C 0.040 3.960 16 O -0.282 6.282 17 C 0.167 3.833 18 C -0.224 4.224 19 C -0.050 4.050 20 C -0.199 4.199 21 C 0.138 3.862 22 F -0.136 7.136 23 C -0.190 4.190 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.265 0.735 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.740 -10.075 17.195 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.130 3.870 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.291 3.709 14 O -0.391 6.391 15 C -0.039 4.039 16 O -0.193 6.193 17 C 0.120 3.880 18 C -0.242 4.242 19 C -0.068 4.068 20 C -0.218 4.218 21 C 0.119 3.881 22 F -0.114 7.114 23 C -0.209 4.209 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.448 -9.107 16.953 20.296 hybrid contribution 0.923 -0.328 -0.250 1.011 sum -5.525 -9.436 16.703 19.963 Atomic orbital electron populations 1.22248 0.96543 1.01647 1.02526 1.21494 0.93698 0.84032 1.02944 1.48203 1.63904 1.13346 1.07149 1.19325 0.96464 0.93713 0.77517 1.21387 0.96858 1.32293 1.06400 0.92439 1.24929 0.97930 0.94810 0.96336 1.69918 1.35778 1.33253 1.14325 0.86544 0.84677 0.78257 0.77869 1.20224 1.21129 1.20122 1.19667 0.79811 0.87165 0.84237 1.90732 1.44214 1.17552 1.86648 1.22808 1.01879 0.93396 0.85796 1.86220 1.81453 1.40495 1.11123 1.18742 0.92865 0.91640 0.84801 1.21385 1.08103 0.95694 0.99057 1.20763 0.95696 0.99326 0.90985 1.21011 1.06837 0.93292 1.00618 1.17270 0.98958 0.89250 0.82616 1.91511 1.91318 1.74766 1.53816 1.20299 1.09076 1.02480 0.89091 0.91909 0.93131 0.91723 0.89403 0.91922 0.94632 0.93729 0.92576 0.89337 0.89262 0.84627 0.84672 0.84730 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.10 1.48 5.93 -4.05 -0.02 1.46 16 3 N -0.59 -11.94 2.46 -175.06 -0.43 -12.37 16 4 C 0.25 6.31 5.16 -5.19 -0.03 6.29 16 5 C -0.53 -14.78 9.39 -34.44 -0.32 -15.11 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 9 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.51 10.41 7.75 -10.98 -0.09 10.33 16 14 O -0.52 -13.35 16.08 -14.35 -0.23 -13.58 16 15 C 0.04 0.58 3.77 36.01 0.14 0.72 16 16 O -0.28 -4.62 9.67 -39.35 -0.38 -5.00 16 17 C 0.17 2.21 6.68 -39.23 -0.26 1.95 16 18 C -0.22 -2.29 9.04 -39.42 -0.36 -2.64 16 19 C -0.05 -0.42 10.04 -39.61 -0.40 -0.82 16 20 C -0.20 -1.86 10.02 -39.49 -0.40 -2.25 16 21 C 0.14 1.59 7.30 -39.44 -0.29 1.30 16 22 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 23 C -0.19 -2.44 9.97 -39.37 -0.39 -2.83 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.56 7.22 -51.93 -0.38 0.19 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 28 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 29 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.09 1.01 6.69 -51.93 -0.35 0.67 16 33 H 0.09 1.08 6.94 -51.93 -0.36 0.72 16 34 H 0.14 1.11 6.30 -52.49 -0.33 0.78 16 35 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.15 1.85 8.06 -52.48 -0.42 1.42 16 LS Contribution 324.09 15.07 4.88 4.88 Total: -1.00 -33.57 324.09 -7.17 -40.73 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -4.63 Total: -2.60 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -2.13 Total: -1.61 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.31 Total: -37.89 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.61 Total: -18.57 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.57 -7.17 -40.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080060365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.056 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds