Wall clock time and date at job start Tue Mar 31 2020 05:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35665 * 117.00102 * 2 1 4 4 C 1.38779 * 119.64279 * 179.97438 * 3 2 1 5 5 C 1.38587 * 119.28285 * 179.97438 * 4 3 2 6 6 C 1.38501 * 118.56545 * 0.25617 * 5 4 3 7 7 N 1.47999 * 120.39143 * 179.72648 * 6 5 4 8 8 O 1.21807 * 119.99880 * 5.92021 * 7 6 5 9 9 O 1.21796 * 120.00239 * 185.92534 * 7 6 5 10 10 C 1.38986 * 119.22242 * 359.49805 * 6 5 4 11 11 N 1.38987 * 119.67210 * 180.25469 * 10 6 5 12 12 C 1.46506 * 119.99999 * 174.46189 * 11 10 6 13 13 C 1.53007 * 109.46831 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46748 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47103 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99894 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00066 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99983 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99904 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47035 * 60.00252 * 19 17 15 21 21 H 1.48506 * 109.47116 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47365 * 300.00358 * 19 17 15 23 23 N 1.32324 * 119.64240 * 359.97438 * 3 2 1 24 24 H 1.08997 * 109.47410 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47175 * 299.99985 * 1 2 3 26 26 H 1.09003 * 109.47080 * 59.99564 * 1 2 3 27 27 H 1.08009 * 120.35876 * 0.02562 * 4 3 2 28 28 H 1.07995 * 120.72234 * 179.97438 * 5 4 3 29 29 H 0.97002 * 120.00105 * 354.45311 * 11 10 6 30 30 H 1.08996 * 109.47057 * 299.99721 * 12 11 10 31 31 H 1.08993 * 109.47482 * 59.99970 * 12 11 10 32 32 H 1.08996 * 109.47151 * 299.99760 * 13 12 11 33 33 H 1.08993 * 109.47034 * 59.99791 * 13 12 11 34 34 H 1.09005 * 109.47023 * 299.99544 * 14 13 12 35 35 H 1.08998 * 109.47451 * 59.99639 * 14 13 12 36 36 H 0.97001 * 119.99617 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4312 1.2727 0.0005 5 6 4.0526 2.5115 0.0000 6 6 3.2623 3.6489 0.0044 7 7 3.8835 4.9922 0.0101 8 8 5.0915 5.1050 -0.0979 9 8 3.1868 5.9848 0.1228 10 6 1.8791 3.5140 -0.0015 11 7 1.0771 4.6491 -0.0026 12 6 -0.3765 4.5189 -0.1311 13 6 -1.0174 5.9081 -0.1034 14 6 -2.5353 5.7721 -0.2383 15 6 -3.1665 7.1403 -0.2117 16 1 -2.5470 8.0189 -0.1084 17 6 -4.5350 7.2704 -0.3192 18 7 -5.2894 6.2005 -0.4445 19 14 -5.3174 8.9663 -0.2854 20 1 -4.7903 9.7771 -1.4124 21 1 -6.7907 8.8344 -0.4165 22 1 -4.9932 9.6355 1.0000 23 7 1.3173 2.3140 -0.0005 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 4.0195 0.3669 0.0005 28 1 5.1299 2.5883 0.0008 29 1 1.4797 5.5276 0.0820 30 1 -0.6152 4.0270 -1.0740 31 1 -0.7628 3.9245 0.6967 32 1 -0.7786 6.3996 0.8397 33 1 -0.6312 6.5029 -0.9311 34 1 -2.7737 5.2808 -1.1817 35 1 -2.9219 5.1770 0.5890 36 1 -6.2522 6.2921 -0.5197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080227880.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:26 Heat of formation + Delta-G solvation = -7.185217 kcal Electronic energy + Delta-G solvation = -21440.124649 eV Core-core repulsion = 17928.198338 eV Total energy + Delta-G solvation = -3511.926311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.31470 -40.94620 -38.67308 -36.95123 -36.06991 -33.79009 -32.93254 -31.91194 -30.18411 -27.99513 -26.88633 -25.59352 -23.84490 -23.24647 -22.23636 -20.52052 -19.40022 -19.00601 -18.75082 -17.61302 -17.32050 -16.49454 -16.43150 -16.16581 -15.10389 -15.08285 -14.51148 -14.24854 -14.11749 -13.91809 -13.82482 -12.38316 -12.33216 -12.22631 -11.91295 -11.60640 -11.55633 -11.23906 -11.21263 -10.97297 -10.80217 -10.72607 -10.63969 -10.23848 -9.96193 -9.70251 -9.53239 -9.19797 -8.40993 -8.20701 -6.06313 -4.09071 -0.14521 0.89093 1.25811 1.39646 2.53377 2.91696 3.20886 3.31040 3.35237 3.38264 3.85390 4.20730 4.41912 4.50398 4.61415 4.99063 5.08966 5.12730 5.29979 5.30111 5.42199 5.50835 5.60970 5.67072 5.99970 6.26387 6.38170 6.48563 6.62289 6.88659 6.93169 6.99579 7.56337 7.60056 7.67634 7.80698 7.91908 8.33431 8.96998 9.55552 11.04975 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017932 B = 0.003875 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.115968 B = 7223.351146 C = 8748.720984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.295 6.295 3 C 0.422 3.578 4 C -0.256 4.256 5 C 0.062 3.938 6 C -0.216 4.216 7 N 0.065 4.935 8 O -0.167 6.167 9 O -0.203 6.203 10 C 0.505 3.495 11 N -0.676 5.676 12 C 0.115 3.885 13 C -0.124 4.124 14 C 0.027 3.973 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.584 5.584 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.158 0.842 28 H 0.166 0.834 29 H 0.427 0.573 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.018 0.982 35 H 0.019 0.981 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.540 -13.296 0.985 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.198 6.198 3 C 0.236 3.764 4 C -0.280 4.280 5 C 0.037 3.963 6 C -0.311 4.311 7 N 0.571 4.429 8 O -0.382 6.382 9 O -0.400 6.400 10 C 0.259 3.741 11 N -0.315 5.315 12 C -0.008 4.008 13 C -0.162 4.162 14 C -0.010 4.010 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.321 5.321 24 H 0.121 0.879 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.176 0.824 28 H 0.184 0.816 29 H 0.279 0.721 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.994 -14.104 0.958 20.607 hybrid contribution 0.278 1.619 0.033 1.643 sum 15.272 -12.484 0.991 19.751 Atomic orbital electron populations 1.23088 0.75720 1.03740 1.03690 1.86293 1.24219 1.23707 1.85630 1.19854 0.89205 0.84129 0.83164 1.20718 0.91556 0.98650 1.17057 1.20959 1.01312 0.88612 0.85458 1.21161 0.92326 0.83695 1.33889 1.43129 1.00759 1.02266 0.96730 1.94500 0.96853 1.93117 1.53748 1.94209 1.60906 1.28276 1.56655 1.17567 0.84786 0.87331 0.84379 1.46601 1.08486 1.06641 1.69759 1.21877 0.76240 1.00616 1.02037 1.21941 1.00035 0.92735 1.01533 1.19004 0.87001 0.97546 0.97462 1.21172 0.91889 0.92667 1.50431 0.92553 1.25011 0.97420 0.96768 0.95146 1.69949 1.05092 1.28364 1.50046 0.86626 0.78068 0.84436 0.78706 1.20169 1.21266 1.20174 1.67183 1.38532 0.96482 1.29927 0.87924 0.91368 0.91329 0.82394 0.81627 0.72133 0.91339 0.91068 0.92335 0.92372 0.96316 0.96286 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.38 101.05 1.05 1.33 16 2 O -0.29 -2.95 10.47 -18.70 -0.20 -3.14 16 3 C 0.42 4.71 7.48 -17.14 -0.13 4.58 16 4 C -0.26 -2.28 10.03 -39.25 -0.39 -2.67 16 5 C 0.06 0.60 9.66 -39.36 -0.38 0.22 16 6 C -0.22 -2.82 6.88 -79.58 -0.55 -3.37 16 7 N 0.06 0.96 4.45 34.14 0.15 1.11 16 8 O -0.17 -2.42 18.53 -29.46 -0.55 -2.97 16 9 O -0.20 -3.26 15.73 -29.46 -0.46 -3.72 16 10 C 0.50 7.22 7.46 -155.01 -1.16 6.07 16 11 N -0.68 -10.44 5.59 -60.44 -0.34 -10.78 16 12 C 0.11 1.91 5.70 -4.03 -0.02 1.89 16 13 C -0.12 -2.44 5.27 -26.73 -0.14 -2.58 16 14 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 15 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 19 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 N -0.58 -7.83 8.42 -12.51 -0.11 -7.93 16 24 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 26 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 28 H 0.17 1.15 7.70 -52.49 -0.40 0.75 16 29 H 0.43 6.67 4.89 -41.22 -0.20 6.47 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 319.65 15.07 4.82 4.82 Total: -1.00 -30.72 319.65 -7.61 -38.32 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -4.37 Total: 0.82 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.27 Total: -7.29 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.45 Total: -43.23 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -1.21 Total: -9.83 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.72 -7.61 -38.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080227880.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.136 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds