Wall clock time and date at job start Tue Mar 31 2020 05:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46897 * 109.47208 * 2 1 4 4 C 1.46895 * 111.00352 * 288.00200 * 3 2 1 5 5 C 1.50699 * 109.47647 * 160.35985 * 4 3 2 6 6 H 1.08000 * 119.99515 * 4.65844 * 5 4 3 7 7 C 1.37874 * 120.00182 * 184.65725 * 5 4 3 8 8 N 1.31516 * 120.00157 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99758 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47405 * 90.00042 * 9 7 5 11 11 H 1.48504 * 109.47104 * 209.99940 * 9 7 5 12 12 H 1.48492 * 109.47257 * 329.99722 * 9 7 5 13 13 C 1.46898 * 111.00275 * 164.04216 * 3 2 1 14 14 C 1.53001 * 109.47344 * 293.95883 * 13 3 2 15 15 S 1.81406 * 109.47128 * 179.97438 * 14 13 3 16 16 O 1.42099 * 109.46845 * 70.94592 * 15 14 13 17 17 C 1.76203 * 102.99713 * 179.97438 * 15 14 13 18 18 C 1.38232 * 120.00128 * 90.00404 * 17 15 14 19 19 C 1.38231 * 120.00068 * 179.97438 * 18 17 15 20 20 C 1.38234 * 120.00255 * 359.97438 * 19 18 17 21 21 C 1.38236 * 119.99759 * 0.27410 * 20 19 18 22 22 C 1.38233 * 120.00033 * 270.02319 * 17 15 14 23 23 H 1.09001 * 109.47102 * 59.46111 * 1 2 3 24 24 H 1.09002 * 109.47688 * 179.46233 * 1 2 3 25 25 H 1.09000 * 109.47691 * 299.46349 * 1 2 3 26 26 H 1.09000 * 109.47061 * 240.00011 * 2 1 3 27 27 H 1.08997 * 109.47042 * 120.00293 * 2 1 3 28 28 H 1.09004 * 109.46674 * 280.36167 * 4 3 2 29 29 H 1.08999 * 109.47168 * 40.35626 * 4 3 2 30 30 H 0.96998 * 120.00105 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47728 * 173.95313 * 13 3 2 32 32 H 1.09005 * 109.47159 * 53.95479 * 13 3 2 33 33 H 1.09003 * 109.47035 * 59.99845 * 14 13 3 34 34 H 1.09002 * 109.47174 * 299.99348 * 14 13 3 35 35 H 1.08006 * 119.99992 * 359.97438 * 18 17 15 36 36 H 1.07997 * 119.99816 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.00040 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.99867 * 179.72474 * 21 20 19 39 39 H 1.08007 * 120.00280 * 359.97438 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7955 2.0226 -1.3042 5 6 1.8469 3.5205 -1.1466 6 1 2.1021 3.9544 -0.1911 7 6 1.5681 4.3368 -2.2222 8 7 1.2578 3.8084 -3.3858 9 14 1.6324 6.1935 -2.0269 10 1 3.0030 6.6762 -2.3330 11 1 0.6655 6.8233 -2.9615 12 1 1.2799 6.5569 -0.6309 13 6 3.4382 1.4418 0.3770 14 6 3.5971 0.9995 1.8331 15 16 5.3491 1.0690 2.2984 16 8 5.7591 2.4259 2.3984 17 6 5.3347 0.5352 3.9776 18 6 5.4694 -0.8075 4.2772 19 6 5.4586 -1.2262 5.5945 20 6 5.3136 -0.3021 6.6123 21 6 5.1737 1.0401 6.3125 22 6 5.1882 1.4591 4.9953 23 1 -0.3633 0.5222 -0.8851 24 1 -0.3634 -1.0276 -0.0096 25 1 -0.3634 0.5055 0.8947 26 1 1.8932 -0.5138 -0.8900 27 1 1.8932 -0.5139 0.8899 28 1 2.5698 1.7039 -2.0022 29 1 0.8180 1.7310 -1.6881 30 1 1.0620 4.3827 -4.1426 31 1 3.8033 2.4628 0.2655 32 1 4.0128 0.7780 -0.2690 33 1 3.2322 -0.0216 1.9445 34 1 3.0227 1.6633 2.4792 35 1 5.5831 -1.5295 3.4820 36 1 5.5634 -2.2753 5.8285 37 1 5.3055 -0.6292 7.6415 38 1 5.0559 1.7615 7.1075 39 1 5.0830 2.5083 4.7612 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081513745.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:39 Heat of formation + Delta-G solvation = -10.096037 kcal Electronic energy + Delta-G solvation = -19351.891204 eV Core-core repulsion = 16386.131884 eV Total energy + Delta-G solvation = -2965.759319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.09296 -37.15678 -35.57660 -32.66959 -31.38132 -31.20248 -31.09400 -29.27950 -26.15587 -23.23457 -22.78490 -22.59791 -22.31428 -19.64730 -18.14865 -16.99252 -16.45167 -15.76286 -15.30566 -15.13983 -14.69771 -14.43084 -14.36285 -14.10162 -13.69789 -13.61326 -13.18931 -12.88746 -12.44030 -12.10349 -11.90696 -11.71150 -11.51732 -11.33013 -11.22640 -11.06321 -10.79561 -10.68994 -10.43252 -10.17783 -10.03919 -9.61220 -9.35213 -9.18925 -9.13812 -8.39176 -8.23413 -7.24402 -5.99093 -3.99705 0.78204 1.19223 1.90347 2.80357 3.36099 3.41619 3.47666 3.53300 3.99697 4.47303 4.67805 4.76068 4.85935 4.99963 5.20001 5.26398 5.36265 5.36901 5.41403 5.60538 5.70150 5.80590 5.87793 5.97792 6.11873 6.14710 6.15542 6.24658 6.29167 6.36537 6.54104 6.59045 6.74702 6.82236 7.25527 7.34356 7.86101 8.14563 8.22712 8.57462 9.08231 9.64604 11.11420 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.004095 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.012677 B = 6835.558858 C = 7602.922475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 N -0.533 5.533 4 C 0.190 3.810 5 C -0.505 4.505 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.900 5.900 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.084 3.916 14 C -0.443 4.443 15 S 1.319 4.681 16 O -0.849 6.849 17 C -0.455 4.455 18 C -0.046 4.046 19 C -0.140 4.140 20 C -0.091 4.091 21 C -0.138 4.138 22 C -0.053 4.053 23 H 0.061 0.939 24 H 0.044 0.956 25 H 0.055 0.945 26 H 0.023 0.977 27 H 0.060 0.940 28 H -0.010 1.010 29 H 0.038 0.962 30 H 0.261 0.739 31 H 0.084 0.916 32 H 0.030 0.970 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.465 -14.526 15.004 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 N -0.258 5.258 4 C 0.065 3.935 5 C -0.544 4.544 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.046 4.046 14 C -0.580 4.580 15 S 1.517 4.483 16 O -0.844 6.844 17 C -0.551 4.551 18 C -0.065 4.065 19 C -0.159 4.159 20 C -0.109 4.109 21 C -0.157 4.157 22 C -0.072 4.072 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.008 0.992 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.154 0.846 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.920 -13.912 14.631 22.073 hybrid contribution -0.984 1.834 0.965 2.294 sum 7.936 -12.078 15.597 21.263 Atomic orbital electron populations 1.21747 0.95663 0.99872 1.02894 1.22039 0.95974 0.91003 0.99023 1.62150 1.14997 1.14296 1.34396 1.19807 0.96583 0.94238 0.82875 1.21189 1.46024 0.90773 0.96371 0.92054 1.24960 0.95441 0.98909 0.95209 1.69950 1.47861 1.35202 1.00993 0.86537 0.77793 0.85389 0.77979 1.20659 1.21250 1.19855 1.21501 0.91232 1.01630 0.90230 1.27881 1.18487 1.07239 1.04436 1.69464 0.90956 1.00117 0.87794 1.93123 1.74103 1.35317 1.81888 1.27965 1.09859 0.99479 1.17763 1.20884 0.94899 0.93835 0.96920 1.21268 1.01802 0.99680 0.93168 1.21320 0.96853 0.93383 0.99375 1.21276 1.01509 0.96214 0.96673 1.21214 0.93591 0.99752 0.92645 0.92004 0.93660 0.92585 0.95850 0.92197 0.99215 0.94361 0.92974 0.89727 0.95167 0.87202 0.88783 0.84628 0.85574 0.85958 0.85961 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.99 37.15 0.37 -2.06 16 2 C 0.05 0.84 5.55 -3.83 -0.02 0.82 16 3 N -0.53 -11.44 4.38 -236.08 -1.03 -12.47 16 4 C 0.19 4.96 4.59 -4.98 -0.02 4.94 16 5 C -0.50 -14.62 8.61 -34.44 -0.30 -14.91 16 6 H 0.06 1.81 7.66 -52.49 -0.40 1.40 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 9 Si 0.90 22.49 29.54 -169.99 -5.02 17.47 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.08 1.57 4.79 -3.82 -0.02 1.55 16 14 C -0.44 -6.45 5.85 37.16 0.22 -6.23 16 15 S 1.32 16.26 13.55 -107.50 -1.46 14.80 16 16 O -0.85 -16.04 16.90 -35.23 -0.60 -16.63 16 17 C -0.45 -5.34 5.61 -39.59 -0.22 -5.57 16 18 C -0.05 -0.41 9.75 -39.59 -0.39 -0.79 16 19 C -0.14 -1.18 10.05 -39.59 -0.40 -1.58 16 20 C -0.09 -0.83 10.05 -39.58 -0.40 -1.23 16 21 C -0.14 -1.51 10.05 -39.58 -0.40 -1.90 16 22 C -0.05 -0.70 9.44 -39.58 -0.37 -1.08 16 23 H 0.06 1.18 6.52 -51.93 -0.34 0.85 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 27 H 0.06 0.87 5.94 -51.93 -0.31 0.56 16 28 H -0.01 -0.27 8.00 -51.93 -0.42 -0.69 16 29 H 0.04 1.06 6.24 -51.93 -0.32 0.73 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.08 1.86 7.32 -51.93 -0.38 1.48 16 32 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 33 H 0.11 1.28 6.28 -51.92 -0.33 0.96 16 34 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 35 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.13 1.89 7.45 -52.48 -0.39 1.50 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -36.68 335.31 -10.18 -46.86 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -5.82 Total: -2.25 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -2.04 Total: -26.53 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: -0.30 Total: -38.78 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.60 Total: -16.63 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 16 Polarization: 16.26 SS G_CDS: -1.46 Total: 14.80 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.68 -10.18 -46.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081513745.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.768 kcal (2) G-P(sol) polarization free energy of solvation -36.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds