Wall clock time and date at job start Tue Mar 31 2020 05:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.47088 * 2 1 4 4 C 1.46895 * 110.99873 * 297.53951 * 3 2 1 5 5 C 1.50694 * 109.47533 * 292.79806 * 4 3 2 6 6 H 1.08006 * 120.00189 * 354.99182 * 5 4 3 7 7 C 1.37883 * 120.00119 * 174.98579 * 5 4 3 8 8 N 1.31508 * 120.00216 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99790 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47253 * 60.00533 * 9 7 5 11 11 H 1.48499 * 109.46997 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46899 * 299.99892 * 9 7 5 13 13 C 1.46897 * 110.99936 * 61.49776 * 3 2 1 14 14 C 1.52995 * 109.47163 * 66.04374 * 13 3 2 15 15 S 1.81408 * 109.47105 * 180.02562 * 14 13 3 16 16 O 1.42106 * 109.46533 * 289.05672 * 15 14 13 17 17 C 1.76201 * 103.00012 * 180.02562 * 15 14 13 18 18 C 1.38235 * 119.99775 * 89.99870 * 17 15 14 19 19 C 1.38243 * 119.99464 * 180.02562 * 18 17 15 20 20 C 1.38228 * 120.00258 * 359.95569 * 19 18 17 21 21 C 1.38238 * 119.99917 * 0.27883 * 20 19 18 22 22 C 1.38234 * 119.99757 * 270.02113 * 17 15 14 23 23 H 1.08997 * 109.47311 * 59.50576 * 1 2 3 24 24 H 1.08998 * 109.47375 * 179.50801 * 1 2 3 25 25 H 1.08999 * 109.46618 * 299.50337 * 1 2 3 26 26 H 1.09003 * 109.47046 * 240.00181 * 2 1 3 27 27 H 1.08995 * 109.46997 * 120.00281 * 2 1 3 28 28 H 1.09004 * 109.47116 * 52.80281 * 4 3 2 29 29 H 1.09004 * 109.47176 * 172.79907 * 4 3 2 30 30 H 0.96998 * 120.00566 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.46950 * 306.04497 * 13 3 2 32 32 H 1.08999 * 109.47104 * 186.04724 * 13 3 2 33 33 H 1.09000 * 109.47087 * 60.00207 * 14 13 3 34 34 H 1.08996 * 109.47405 * 299.99650 * 14 13 3 35 35 H 1.07998 * 120.00404 * 359.97438 * 18 17 15 36 36 H 1.07996 * 119.99364 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.00167 * 180.02562 * 20 19 18 38 38 H 1.08000 * 120.00004 * 179.72289 * 21 20 19 39 39 H 1.07999 * 120.00017 * 0.02562 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5973 2.0927 -1.2160 5 6 2.2905 1.4934 -2.4124 6 1 3.0363 0.7243 -2.2753 7 6 1.9726 1.9269 -3.6821 8 7 1.0648 2.8637 -3.8491 9 14 2.8314 1.1836 -5.1652 10 1 2.5685 -0.2773 -5.2086 11 1 2.3150 1.8170 -6.4051 12 1 4.2936 1.4207 -5.0607 13 6 1.5782 2.0995 1.2052 14 6 2.2403 1.4792 2.4371 15 16 1.6945 2.3611 3.9255 16 8 2.2771 3.6570 3.9486 17 6 2.5466 1.5210 5.2188 18 6 3.7999 1.9503 5.6136 19 6 4.4686 1.2908 6.6279 20 6 3.8837 0.2027 7.2481 21 6 2.6325 -0.2296 6.8500 22 6 1.9620 0.4323 5.8384 23 1 -0.3634 0.5215 -0.8855 24 1 -0.3634 -1.0276 -0.0088 25 1 -0.3632 0.5061 0.8944 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.5181 1.9971 -1.3357 29 1 1.8617 3.1469 -1.1333 30 1 0.8414 3.1690 -4.7423 31 1 0.4948 2.0218 1.2972 32 1 1.8620 3.1491 1.1298 33 1 3.3237 1.5569 2.3451 34 1 1.9564 0.4296 2.5126 35 1 4.2570 2.8004 5.1290 36 1 5.4479 1.6260 6.9360 37 1 4.4060 -0.3123 8.0408 38 1 2.1774 -1.0825 7.3315 39 1 0.9832 0.0964 5.5294 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081513746.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:42 Heat of formation + Delta-G solvation = -7.828640 kcal Electronic energy + Delta-G solvation = -19342.145604 eV Core-core repulsion = 16376.484607 eV Total energy + Delta-G solvation = -2965.660998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.12447 -37.45067 -35.64817 -32.74549 -31.28049 -31.12608 -30.90766 -29.16359 -26.08674 -23.70177 -23.04525 -22.81626 -22.17085 -19.19883 -18.15214 -17.02734 -16.19564 -15.84322 -15.54721 -15.23941 -15.12764 -14.46555 -14.33350 -14.07876 -13.70740 -13.46006 -12.99806 -12.94398 -12.54970 -12.18864 -11.90554 -11.77133 -11.63655 -11.36427 -11.25160 -10.99456 -10.77596 -10.64716 -10.47585 -10.14805 -10.00862 -9.68712 -9.40867 -9.19820 -9.16739 -8.41745 -8.29278 -7.17691 -6.00891 -4.01973 0.74541 1.16255 1.84685 2.74097 3.34126 3.38267 3.41337 3.49714 3.93264 4.44189 4.65028 4.73548 4.83075 5.07231 5.17008 5.22388 5.32187 5.34327 5.38731 5.57486 5.76569 5.77650 5.89379 5.93796 6.08753 6.11438 6.13431 6.21756 6.25303 6.31773 6.45529 6.70827 6.71581 6.90686 7.32327 7.44231 7.82626 8.12186 8.21701 8.57210 9.05705 9.61939 11.09727 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030111 B = 0.003409 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.675621 B = 8211.694668 C = 8291.357054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.059 3.941 3 N -0.532 5.532 4 C 0.187 3.813 5 C -0.506 4.506 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.072 3.928 14 C -0.440 4.440 15 S 1.318 4.682 16 O -0.853 6.853 17 C -0.455 4.455 18 C -0.053 4.053 19 C -0.137 4.137 20 C -0.090 4.090 21 C -0.140 4.140 22 C -0.046 4.046 23 H 0.069 0.931 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.006 0.994 29 H 0.024 0.976 30 H 0.262 0.738 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 -7.488 21.452 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.070 4.070 3 N -0.256 5.256 4 C 0.062 3.938 5 C -0.544 4.544 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.058 4.058 14 C -0.578 4.578 15 S 1.516 4.484 16 O -0.848 6.848 17 C -0.551 4.551 18 C -0.072 4.072 19 C -0.157 4.157 20 C -0.109 4.109 21 C -0.159 4.159 22 C -0.065 4.065 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.023 0.977 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.131 0.869 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.041 -6.594 21.384 22.471 hybrid contribution 1.991 -0.413 -1.043 2.285 sum -0.049 -7.007 20.341 21.514 Atomic orbital electron populations 1.22411 0.99352 1.01081 1.02160 1.21993 0.92155 0.91526 1.01307 1.62337 1.59207 1.01922 1.02172 1.19812 0.94930 0.93757 0.85325 1.21109 1.21774 1.21444 0.90121 0.92031 1.24978 0.95322 0.95273 0.99012 1.69939 1.32149 1.29221 1.22564 0.86578 0.79925 0.79233 0.81767 1.20286 1.21377 1.20250 1.21592 0.96455 0.98133 0.89641 1.27817 1.08730 1.10117 1.11131 1.69473 1.12360 0.82504 0.84078 1.93105 1.77427 1.30264 1.84001 1.27903 1.04541 1.07462 1.15149 1.21200 0.93314 0.97580 0.95139 1.21273 1.00319 0.96766 0.97303 1.21328 0.95310 0.95798 0.98419 1.21279 0.95596 1.00546 0.98434 1.20893 0.99117 0.92448 0.94030 0.91255 0.93342 0.93371 0.90176 0.92909 0.97655 0.95788 0.92888 0.94340 0.91278 0.88852 0.86899 0.85499 0.85940 0.85918 0.85523 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.16 9.26 37.16 0.34 -2.82 16 2 C 0.06 1.09 5.67 -3.82 -0.02 1.06 16 3 N -0.53 -11.36 4.69 -236.08 -1.11 -12.47 16 4 C 0.19 4.84 4.54 -4.98 -0.02 4.82 16 5 C -0.51 -14.24 8.39 -34.44 -0.29 -14.53 16 6 H 0.06 1.72 7.39 -52.48 -0.39 1.34 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.07 1.26 4.75 -3.83 -0.02 1.24 16 14 C -0.44 -6.13 5.81 37.16 0.22 -5.91 16 15 S 1.32 15.26 13.55 -107.50 -1.46 13.81 16 16 O -0.85 -15.17 16.90 -35.23 -0.60 -15.76 16 17 C -0.45 -5.13 5.61 -39.58 -0.22 -5.35 16 18 C -0.05 -0.68 9.44 -39.58 -0.37 -1.05 16 19 C -0.14 -1.45 10.05 -39.58 -0.40 -1.85 16 20 C -0.09 -0.80 10.05 -39.59 -0.40 -1.20 16 21 C -0.14 -1.14 10.05 -39.58 -0.40 -1.54 16 22 C -0.05 -0.39 9.75 -39.58 -0.39 -0.78 16 23 H 0.07 1.37 6.28 -51.93 -0.33 1.04 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.68 6.33 -51.93 -0.33 0.35 16 26 H 0.08 1.65 6.98 -51.93 -0.36 1.29 16 27 H 0.05 0.83 6.40 -51.93 -0.33 0.49 16 28 H 0.01 0.15 6.02 -51.93 -0.31 -0.16 16 29 H 0.02 0.68 7.91 -51.93 -0.41 0.27 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.04 0.59 6.06 -51.93 -0.31 0.28 16 32 H 0.07 1.34 7.92 -51.93 -0.41 0.93 16 33 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 34 H 0.11 1.31 6.52 -51.93 -0.34 0.97 16 35 H 0.13 1.80 7.45 -52.49 -0.39 1.41 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 330.19 15.07 4.98 4.98 Total: -1.00 -35.88 330.19 -10.12 -46.00 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.59 Total: -0.89 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -2.06 Total: -26.42 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.37 Total: -38.46 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.60 Total: -15.76 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 15.26 SS G_CDS: -1.46 Total: 13.81 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.88 -10.12 -46.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081513746.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.169 kcal (2) G-P(sol) polarization free energy of solvation -35.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds