Wall clock time and date at job start Tue Mar 31 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34229 * 116.99859 * 2 1 4 4 O 1.20828 * 119.99689 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00094 * 179.97438 * 3 2 1 6 6 H 1.08989 * 109.47151 * 299.99873 * 5 3 2 7 7 C 1.50699 * 109.46962 * 59.99994 * 5 3 2 8 8 C 1.38225 * 120.01608 * 99.99990 * 7 5 3 9 9 C 1.38219 * 120.02950 * 179.72497 * 8 7 5 10 10 C 1.38274 * 120.04966 * 0.02562 * 9 8 7 11 11 C 1.38182 * 120.02410 * 0.02562 * 10 9 8 12 12 C 1.38440 * 120.01197 * 279.72566 * 7 5 3 13 13 F 1.35103 * 120.02569 * 0.24883 * 12 7 5 14 14 N 1.46897 * 109.47201 * 179.97438 * 5 3 2 15 15 C 1.46898 * 111.00102 * 183.95361 * 14 5 3 16 16 C 1.46904 * 110.99790 * 60.00062 * 14 5 3 17 17 C 1.50702 * 109.47163 * 189.99540 * 16 14 5 18 18 H 1.08003 * 119.99843 * 0.02562 * 17 16 14 19 19 C 1.37878 * 120.00238 * 179.97438 * 17 16 14 20 20 N 1.31514 * 119.99515 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00152 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47466 * 60.00102 * 21 19 17 23 23 H 1.48501 * 109.46896 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47258 * 299.99733 * 21 19 17 25 25 H 1.08998 * 109.47056 * 60.00076 * 1 2 3 26 26 H 1.08995 * 109.46986 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46938 * 300.00189 * 1 2 3 28 28 H 1.07998 * 119.98144 * 359.74112 * 8 7 5 29 29 H 1.07990 * 119.97712 * 180.02562 * 9 8 7 30 30 H 1.07994 * 119.98453 * 179.97438 * 10 9 8 31 31 H 1.07997 * 120.01141 * 179.97438 * 11 10 9 32 32 H 1.09003 * 109.47139 * 60.00428 * 15 14 5 33 33 H 1.09003 * 109.46985 * 180.02562 * 15 14 5 34 34 H 1.08998 * 109.46989 * 300.00319 * 15 14 5 35 35 H 1.08993 * 109.47519 * 309.99932 * 16 14 5 36 36 H 1.09001 * 109.46663 * 70.00120 * 16 14 5 37 37 H 0.97000 * 119.99851 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7811 0.8907 7 6 4.1056 0.5916 -1.2295 8 6 4.4937 1.3421 -2.3235 9 6 4.9937 0.7160 -3.4497 10 6 5.1058 -0.6618 -3.4837 11 6 4.7175 -1.4143 -2.3917 12 6 4.2179 -0.7879 -1.2623 13 9 3.8394 -1.5225 -0.1935 14 7 3.9828 2.6836 -0.0002 15 6 5.4441 2.8006 -0.0942 16 6 3.4739 3.3836 1.1869 17 6 3.7061 4.8648 1.0347 18 1 4.1835 5.2479 0.1449 19 6 3.3081 5.7311 2.0308 20 7 2.7263 5.2645 3.1141 21 14 3.5953 7.5671 1.8418 22 1 2.8836 8.0577 0.6344 23 1 3.0810 8.2746 3.0419 24 1 5.0502 7.8285 1.6993 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.4064 2.4183 -2.2980 29 1 5.2970 1.3032 -4.3037 30 1 5.4962 -1.1499 -4.3644 31 1 4.8048 -2.4904 -2.4187 32 1 5.7872 2.3342 -1.0177 33 1 5.7252 3.8537 -0.0923 34 1 5.9041 2.3005 0.7581 35 1 2.4061 3.1921 1.2918 36 1 3.9965 3.0232 2.0730 37 1 2.4467 5.8738 3.8151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083217153.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:52 Heat of formation + Delta-G solvation = -75.716011 kcal Electronic energy + Delta-G solvation = -22741.459970 eV Core-core repulsion = 19206.641979 eV Total energy + Delta-G solvation = -3534.817991 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.71566 -40.35680 -38.95167 -36.85644 -35.50876 -32.85549 -31.34571 -30.55249 -28.41168 -27.14342 -26.76151 -24.06496 -22.68438 -22.10445 -21.22861 -19.73071 -17.62562 -17.24121 -16.64771 -16.36447 -16.14576 -15.90197 -15.39221 -15.21525 -14.64683 -14.20841 -13.95405 -13.78639 -13.61216 -13.06168 -12.86356 -12.54569 -12.42665 -12.10055 -11.90471 -11.71241 -11.45429 -11.33624 -11.08498 -10.86831 -10.68794 -10.53643 -10.30954 -10.06174 -9.66172 -9.14221 -8.75531 -8.56438 -8.33326 -7.44878 -5.96715 -3.96487 1.14967 1.27829 2.70999 2.99803 3.36846 3.40785 3.43628 3.66792 4.31917 4.44546 4.66087 4.71361 4.91904 5.06013 5.23727 5.30257 5.35531 5.39428 5.41770 5.45593 5.61297 5.74041 5.89624 6.00437 6.12166 6.15906 6.21622 6.45781 6.48163 6.66287 6.73042 6.94355 7.22070 7.27545 7.78077 8.06796 8.13994 8.29561 8.52502 9.07800 9.65107 11.14904 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019796 B = 0.005728 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.075724 B = 4886.705485 C = 5745.381893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.362 6.362 3 C 0.461 3.539 4 O -0.457 6.457 5 C 0.137 3.863 6 H 0.078 0.922 7 C -0.116 4.116 8 C -0.057 4.057 9 C -0.142 4.142 10 C -0.090 4.090 11 C -0.165 4.165 12 C 0.117 3.883 13 F -0.131 7.131 14 N -0.519 5.519 15 C 0.026 3.974 16 C 0.177 3.823 17 C -0.500 4.500 18 H 0.063 0.937 19 C 0.055 3.945 20 N -0.899 5.899 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.154 0.846 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.016 0.984 35 H 0.061 0.939 36 H -0.012 1.012 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.839 -13.964 -11.180 18.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.279 6.279 3 C 0.301 3.699 4 O -0.340 6.340 5 C 0.026 3.974 6 H 0.096 0.904 7 C -0.118 4.118 8 C -0.075 4.075 9 C -0.160 4.160 10 C -0.109 4.109 11 C -0.184 4.184 12 C 0.098 3.902 13 F -0.109 7.109 14 N -0.245 5.245 15 C -0.121 4.121 16 C 0.053 3.947 17 C -0.539 4.539 18 H 0.081 0.919 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.081 0.919 28 H 0.171 0.829 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.151 0.849 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.006 0.994 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.282 -13.380 -11.353 17.695 hybrid contribution 0.147 0.507 1.032 1.159 sum 2.428 -12.873 -10.322 16.678 Atomic orbital electron populations 1.23170 0.77010 1.02965 1.02513 1.86514 1.22802 1.33720 1.84847 1.23296 0.91305 0.81467 0.73814 1.90730 1.66087 1.35461 1.41721 1.19815 0.87820 0.93875 0.95857 0.90448 1.19626 1.03676 0.91450 0.97046 1.21292 0.93823 1.01895 0.90530 1.21241 1.01558 0.94598 0.98580 1.21004 0.98310 0.93983 0.97557 1.21031 1.03555 1.00732 0.93099 1.17548 0.99242 0.88504 0.84937 1.91515 1.88769 1.76756 1.53906 1.62067 1.10988 1.05423 1.46005 1.22531 0.87220 1.03280 0.99100 1.20156 0.97545 0.93697 0.83259 1.20990 1.38722 0.90641 1.03515 0.91933 1.24958 0.95396 0.98984 0.95268 1.69954 1.40949 1.35018 1.07910 0.86547 0.78353 0.84987 0.77400 1.20187 1.21419 1.20345 0.92207 0.88620 0.91928 0.82854 0.85310 0.85356 0.84942 0.92343 0.89649 0.96561 0.92094 0.99432 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.58 16 2 O -0.36 -6.33 9.56 -39.25 -0.38 -6.70 16 3 C 0.46 9.46 6.89 36.01 0.25 9.70 16 4 O -0.46 -10.98 13.63 -18.75 -0.26 -11.23 16 5 C 0.14 2.65 1.93 -70.02 -0.13 2.51 16 6 H 0.08 1.51 7.94 -51.94 -0.41 1.10 16 7 C -0.12 -1.87 4.44 -104.55 -0.46 -2.34 16 8 C -0.06 -0.83 7.24 -39.59 -0.29 -1.12 16 9 C -0.14 -1.60 10.04 -39.58 -0.40 -1.99 16 10 C -0.09 -0.92 10.04 -39.59 -0.40 -1.32 16 11 C -0.17 -1.91 10.03 -39.51 -0.40 -2.30 16 12 C 0.12 1.71 6.99 -39.42 -0.28 1.44 16 13 F -0.13 -2.03 15.97 2.25 0.04 -1.99 16 14 N -0.52 -11.33 3.59 -239.15 -0.86 -12.19 16 15 C 0.03 0.50 8.51 60.06 0.51 1.01 16 16 C 0.18 4.78 4.32 -4.97 -0.02 4.76 16 17 C -0.50 -14.31 8.46 -34.44 -0.29 -14.61 16 18 H 0.06 1.74 7.12 -52.48 -0.37 1.36 16 19 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 21 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 26 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 28 H 0.15 2.40 6.42 -52.49 -0.34 2.06 16 29 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.06 0.92 4.97 -51.93 -0.26 0.66 16 33 H 0.08 1.70 6.76 -51.93 -0.35 1.35 16 34 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 1.81 5.21 -51.93 -0.27 1.54 16 36 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 313.37 15.07 4.72 4.72 Total: -1.00 -33.16 313.37 -6.47 -39.63 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -4.52 Total: -1.37 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -0.94 Total: -1.17 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.12 Total: -38.93 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.63 Total: -17.93 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.16 -6.47 -39.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217153.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.086 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds