Wall clock time and date at job start Tue Mar 31 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34229 * 116.99859 * 2 1 4 4 O 1.20828 * 119.99689 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00094 * 179.97438 * 3 2 1 6 6 H 1.08989 * 109.47151 * 299.99873 * 5 3 2 7 7 C 1.50699 * 109.46962 * 59.99994 * 5 3 2 8 8 C 1.38225 * 120.01608 * 99.99990 * 7 5 3 9 9 C 1.38219 * 120.02950 * 179.72497 * 8 7 5 10 10 C 1.38274 * 120.04966 * 0.02562 * 9 8 7 11 11 C 1.38182 * 120.02410 * 0.02562 * 10 9 8 12 12 C 1.38440 * 120.01197 * 279.72566 * 7 5 3 13 13 F 1.35103 * 120.02569 * 0.24883 * 12 7 5 14 14 N 1.46897 * 109.47201 * 179.97438 * 5 3 2 15 15 C 1.46898 * 111.00102 * 183.95361 * 14 5 3 16 16 C 1.46904 * 110.99790 * 60.00062 * 14 5 3 17 17 C 1.50702 * 109.47163 * 189.99540 * 16 14 5 18 18 H 1.08003 * 119.99843 * 0.02562 * 17 16 14 19 19 C 1.37878 * 120.00238 * 179.97438 * 17 16 14 20 20 N 1.31514 * 119.99515 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00152 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47466 * 60.00102 * 21 19 17 23 23 H 1.48501 * 109.46896 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47258 * 299.99733 * 21 19 17 25 25 H 1.08998 * 109.47056 * 60.00076 * 1 2 3 26 26 H 1.08995 * 109.46986 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46938 * 300.00189 * 1 2 3 28 28 H 1.07998 * 119.98144 * 359.74112 * 8 7 5 29 29 H 1.07990 * 119.97712 * 180.02562 * 9 8 7 30 30 H 1.07994 * 119.98453 * 179.97438 * 10 9 8 31 31 H 1.07997 * 120.01141 * 179.97438 * 11 10 9 32 32 H 1.09003 * 109.47139 * 60.00428 * 15 14 5 33 33 H 1.09003 * 109.46985 * 180.02562 * 15 14 5 34 34 H 1.08998 * 109.46989 * 300.00319 * 15 14 5 35 35 H 1.08993 * 109.47519 * 309.99932 * 16 14 5 36 36 H 1.09001 * 109.46663 * 70.00120 * 16 14 5 37 37 H 0.97000 * 119.99851 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7811 0.8907 7 6 4.1056 0.5916 -1.2295 8 6 4.4937 1.3421 -2.3235 9 6 4.9937 0.7160 -3.4497 10 6 5.1058 -0.6618 -3.4837 11 6 4.7175 -1.4143 -2.3917 12 6 4.2179 -0.7879 -1.2623 13 9 3.8394 -1.5225 -0.1935 14 7 3.9828 2.6836 -0.0002 15 6 5.4441 2.8006 -0.0942 16 6 3.4739 3.3836 1.1869 17 6 3.7061 4.8648 1.0347 18 1 4.1835 5.2479 0.1449 19 6 3.3081 5.7311 2.0308 20 7 2.7263 5.2645 3.1141 21 14 3.5953 7.5671 1.8418 22 1 2.8836 8.0577 0.6344 23 1 3.0810 8.2746 3.0419 24 1 5.0502 7.8285 1.6993 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.4064 2.4183 -2.2980 29 1 5.2970 1.3032 -4.3037 30 1 5.4962 -1.1499 -4.3644 31 1 4.8048 -2.4904 -2.4187 32 1 5.7872 2.3342 -1.0177 33 1 5.7252 3.8537 -0.0923 34 1 5.9041 2.3005 0.7581 35 1 2.4061 3.1921 1.2918 36 1 3.9965 3.0232 2.0730 37 1 2.4467 5.8738 3.8151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083217153.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:52 Heat of formation + Delta-G solvation = -96.941641 kcal Electronic energy + Delta-G solvation = -22742.380382 eV Core-core repulsion = 19206.641979 eV Total energy + Delta-G solvation = -3535.738403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.83385 -41.88479 -40.12526 -38.36578 -37.13375 -34.88831 -32.83875 -31.55658 -29.69463 -29.14298 -28.08913 -25.86229 -23.80381 -23.38087 -22.88149 -21.28078 -18.91299 -18.76846 -18.39676 -17.81031 -17.63360 -17.24569 -16.58616 -16.52759 -16.38327 -15.75181 -15.23266 -15.19478 -15.06592 -14.51134 -14.10219 -14.09491 -14.00182 -13.60315 -13.22942 -13.14430 -12.97443 -12.76790 -12.61921 -12.50002 -12.39884 -12.12289 -11.95903 -11.81052 -11.40203 -11.17275 -10.54466 -9.81969 -9.60837 -9.25948 -8.19796 -6.28503 0.12278 0.30164 1.11245 1.39413 1.44656 1.51714 1.59896 2.39590 2.67017 3.05274 3.14259 3.36830 3.42285 3.82098 3.92347 3.96535 4.22973 4.26540 4.27238 4.44039 4.47024 4.51490 4.61058 4.63278 4.91637 5.01854 5.06345 5.17353 5.19746 5.23829 5.35933 5.46228 5.51612 5.61746 5.98102 6.02155 6.18151 6.38913 6.73859 6.85202 7.38679 8.92578 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019796 B = 0.005728 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.075724 B = 4886.705485 C = 5745.381893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.463 3.537 4 O -0.504 6.504 5 C 0.136 3.864 6 H 0.067 0.933 7 C -0.138 4.138 8 C -0.076 4.076 9 C -0.129 4.129 10 C -0.073 4.073 11 C -0.155 4.155 12 C 0.098 3.902 13 F -0.143 7.143 14 N -0.522 5.522 15 C 0.032 3.968 16 C 0.193 3.807 17 C -0.516 4.516 18 H 0.068 0.932 19 C -0.003 4.003 20 N -0.939 5.939 21 Si 0.974 3.026 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.261 1.261 25 H 0.062 0.938 26 H 0.140 0.860 27 H 0.052 0.948 28 H 0.135 0.865 29 H 0.160 0.840 30 H 0.173 0.827 31 H 0.161 0.839 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.012 0.988 35 H 0.029 0.971 36 H -0.044 1.044 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.202 -15.032 -14.099 21.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.305 3.695 4 O -0.390 6.390 5 C 0.026 3.974 6 H 0.085 0.915 7 C -0.139 4.139 8 C -0.094 4.094 9 C -0.147 4.147 10 C -0.090 4.090 11 C -0.174 4.174 12 C 0.079 3.921 13 F -0.122 7.122 14 N -0.247 5.247 15 C -0.115 4.115 16 C 0.068 3.932 17 C -0.554 4.554 18 H 0.086 0.914 19 C -0.201 4.201 20 N -0.580 5.580 21 Si 0.798 3.202 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.186 1.186 25 H 0.081 0.919 26 H 0.158 0.842 27 H 0.071 0.929 28 H 0.153 0.847 29 H 0.178 0.822 30 H 0.191 0.809 31 H 0.179 0.821 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.031 0.969 35 H 0.047 0.953 36 H -0.027 1.027 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.664 -14.490 -14.294 20.681 hybrid contribution -0.308 0.671 1.854 1.996 sum 3.355 -13.819 -12.440 18.894 Atomic orbital electron populations 1.23541 0.74853 1.05763 1.02196 1.86505 1.24905 1.31968 1.84033 1.23628 0.91899 0.81577 0.72432 1.90699 1.67116 1.37014 1.44195 1.19806 0.87465 0.92391 0.97745 0.91519 1.19420 1.06050 0.92315 0.96155 1.21230 0.95501 1.01102 0.91560 1.21584 0.99591 0.95600 0.97916 1.21520 0.95976 0.93350 0.98200 1.21422 1.01713 1.02331 0.91917 1.17805 1.00571 0.87880 0.85858 1.91480 1.89126 1.76821 1.54776 1.61890 1.12672 1.07144 1.43021 1.22548 0.85405 1.02799 1.00785 1.19738 0.95442 0.93943 0.84127 1.21350 1.38659 0.91638 1.03760 0.91410 1.25974 0.94872 1.04478 0.94739 1.70112 1.42037 1.36927 1.08874 0.85364 0.79068 0.78255 0.77466 1.19528 1.20989 1.18590 0.91939 0.84170 0.92950 0.84688 0.82236 0.80919 0.82116 0.88711 0.90902 0.96935 0.95280 1.02685 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.56 113.37 1.20 2.01 16 2 O -0.36 -12.82 9.56 -51.40 -0.49 -13.31 16 3 C 0.46 19.98 6.89 71.24 0.49 20.47 16 4 O -0.50 -25.76 13.63 21.96 0.30 -25.46 16 5 C 0.14 5.54 1.93 43.42 0.08 5.62 16 6 H 0.07 2.80 7.94 -2.39 -0.02 2.78 16 7 C -0.14 -4.41 4.44 -19.82 -0.09 -4.50 16 8 C -0.08 -2.09 7.24 22.26 0.16 -1.93 16 9 C -0.13 -2.39 10.04 22.27 0.22 -2.17 16 10 C -0.07 -1.09 10.04 22.26 0.22 -0.87 16 11 C -0.16 -2.97 10.03 22.31 0.22 -2.75 16 12 C 0.10 2.73 6.99 22.38 0.16 2.89 16 13 F -0.14 -4.39 15.97 44.97 0.72 -3.67 16 14 N -0.52 -23.93 3.59 -910.52 -3.26 -27.20 16 15 C 0.03 1.22 8.51 127.69 1.09 2.31 16 16 C 0.19 11.08 4.32 85.56 0.37 11.45 16 17 C -0.52 -30.62 8.46 25.60 0.22 -30.40 16 18 H 0.07 3.85 7.12 -2.91 -0.02 3.83 16 19 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 20 N -0.94 -59.60 13.29 21.45 0.28 -59.32 16 21 Si 0.97 45.96 29.54 68.60 2.03 47.98 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 25 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 26 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.05 1.55 8.13 -2.39 -0.02 1.53 16 28 H 0.14 4.19 6.42 -2.91 -0.02 4.17 16 29 H 0.16 1.99 8.06 -2.92 -0.02 1.97 16 30 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 31 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.09 2.95 4.97 -2.39 -0.01 2.94 16 33 H 0.07 2.97 6.76 -2.39 -0.02 2.95 16 34 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.03 1.87 5.21 -2.39 -0.01 1.86 16 36 H -0.04 -2.75 8.12 -2.39 -0.02 -2.77 16 37 H 0.26 15.69 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -76.84 313.37 5.46 -71.38 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.08 Total: 7.20 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 4.81 Total: 2.40 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -2.98 Total: -86.52 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.19 Total: -38.77 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.72 Total: -3.67 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -76.84 5.46 -71.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217153.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.563 kcal (2) G-P(sol) polarization free energy of solvation -76.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds