Wall clock time and date at job start Tue Mar 31 2020 05:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34712 * 116.99503 * 2 1 4 4 O 1.21473 * 120.00640 * 359.97438 * 3 2 1 5 5 C 1.47738 * 119.99477 * 179.97438 * 3 2 1 6 6 C 1.39618 * 120.14113 * 354.64566 * 5 3 2 7 7 C 1.38157 * 119.82529 * 179.97438 * 6 5 3 8 8 F 1.35094 * 119.95327 * 180.02562 * 7 6 5 9 9 C 1.38607 * 120.09206 * 0.02562 * 7 6 5 10 10 C 1.38308 * 120.27964 * 359.70102 * 9 7 6 11 11 C 1.37976 * 120.17820 * 0.54971 * 10 9 7 12 12 C 1.50698 * 120.04837 * 179.74447 * 11 10 9 13 13 N 1.46908 * 109.46762 * 106.45598 * 12 11 10 14 14 C 1.46891 * 110.99873 * 288.81385 * 13 12 11 15 15 C 1.46899 * 110.99659 * 164.85414 * 13 12 11 16 16 C 1.50696 * 109.46913 * 190.00076 * 15 13 12 17 17 H 1.08008 * 120.00383 * 0.02562 * 16 15 13 18 18 C 1.37882 * 120.00398 * 180.02562 * 16 15 13 19 19 N 1.31515 * 119.99577 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47187 * 59.99857 * 20 18 16 22 22 H 1.48500 * 109.47302 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47041 * 300.00026 * 20 18 16 24 24 H 1.08999 * 109.47573 * 299.99942 * 1 2 3 25 25 H 1.09003 * 109.46912 * 60.00225 * 1 2 3 26 26 H 1.08999 * 109.47404 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.08722 * 359.95484 * 6 5 3 28 28 H 1.08002 * 119.85685 * 179.97438 * 9 7 6 29 29 H 1.08004 * 119.91159 * 180.27799 * 10 9 7 30 30 H 1.08998 * 109.47395 * 346.45903 * 12 11 10 31 31 H 1.09000 * 109.47283 * 226.45884 * 12 11 10 32 32 H 1.09002 * 109.47789 * 64.91736 * 14 13 12 33 33 H 1.09006 * 109.47119 * 184.91566 * 14 13 12 34 34 H 1.08996 * 109.47490 * 304.90923 * 14 13 12 35 35 H 1.08997 * 109.47495 * 310.00667 * 15 13 12 36 36 H 1.09002 * 109.46766 * 70.00797 * 15 13 12 37 37 H 0.96994 * 119.99913 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2191 -0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.3018 0.1139 0.1138 7 6 5.6811 0.1937 0.1131 8 9 6.4218 -0.9308 0.2219 9 6 6.3058 1.4259 0.0008 10 6 5.5540 2.5808 -0.1172 11 6 4.1759 2.5148 -0.1126 12 6 3.3596 3.7755 -0.2356 13 7 2.7663 3.8457 -1.5777 14 6 3.7915 4.1217 -2.5927 15 6 1.6931 4.8476 -1.6271 16 6 0.9489 4.7227 -2.9315 17 1 1.2434 3.9736 -3.6517 18 6 -0.1079 5.5647 -3.2058 19 7 -0.4662 6.4772 -2.3291 20 14 -1.0309 5.4093 -4.8224 21 1 -1.6186 4.0497 -4.9282 22 1 -2.1156 6.4223 -4.8724 23 1 -0.0924 5.6321 -5.9515 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.8151 -0.8462 0.2020 28 1 7.3843 1.4839 0.0011 29 1 6.0471 3.5373 -0.2089 30 1 4.0023 4.6415 -0.0768 31 1 2.5667 3.7695 0.5124 32 1 4.4887 3.2853 -2.6420 33 1 3.3148 4.2550 -3.5639 34 1 4.3319 5.0299 -2.3258 35 1 1.0042 4.6834 -0.7985 36 1 2.1242 5.8457 -1.5489 37 1 -1.2099 7.0693 -2.5218 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083217187.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:36 Heat of formation + Delta-G solvation = -88.036152 kcal Electronic energy + Delta-G solvation = -22270.680410 eV Core-core repulsion = 18735.328178 eV Total energy + Delta-G solvation = -3535.352232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.94988 -40.40297 -38.71762 -36.42549 -35.77852 -32.61566 -31.66573 -30.99911 -27.68339 -27.08905 -26.40284 -24.34729 -23.55115 -21.85715 -20.79984 -20.07096 -18.12685 -17.06523 -16.39569 -16.09398 -16.02781 -15.82032 -15.59866 -15.33370 -14.80087 -14.24602 -13.99030 -13.92137 -13.31875 -13.16423 -12.97760 -12.91721 -12.05144 -11.91974 -11.86248 -11.65303 -11.43855 -11.33915 -11.05900 -10.84898 -10.63019 -10.44131 -10.36311 -9.91927 -9.58376 -9.19870 -9.16443 -8.60500 -8.35673 -7.15832 -5.95408 -3.95361 0.67019 1.10954 2.76249 2.92284 3.36089 3.39928 3.42997 3.69038 4.12477 4.47708 4.59664 4.75793 4.88713 5.04843 5.19208 5.33397 5.36151 5.41081 5.47100 5.59678 5.77531 5.85629 5.87975 5.93787 6.07276 6.17267 6.29689 6.33780 6.47182 6.69426 6.77407 6.82514 7.41267 7.45441 7.86167 8.13809 8.23321 8.31978 8.63527 9.11153 9.67251 11.15613 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.005154 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.225791 B = 5431.224328 C = 6215.306404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.367 6.367 3 C 0.495 3.505 4 O -0.443 6.443 5 C -0.071 4.071 6 C -0.103 4.103 7 C 0.075 3.925 8 F -0.141 7.141 9 C -0.123 4.123 10 C -0.101 4.101 11 C -0.011 4.011 12 C 0.083 3.917 13 N -0.522 5.522 14 C 0.032 3.968 15 C 0.200 3.800 16 C -0.501 4.501 17 H 0.059 0.941 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.896 3.104 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.147 0.853 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.031 0.969 31 H 0.101 0.899 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.010 0.990 35 H 0.038 0.962 36 H -0.014 1.014 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.401 -12.092 6.730 17.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.285 6.285 3 C 0.336 3.664 4 O -0.326 6.326 5 C -0.073 4.073 6 C -0.122 4.122 7 C 0.055 3.945 8 F -0.119 7.119 9 C -0.142 4.142 10 C -0.119 4.119 11 C -0.013 4.013 12 C -0.045 4.045 13 N -0.246 5.246 14 C -0.116 4.116 15 C 0.076 3.924 16 C -0.539 4.539 17 H 0.078 0.922 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.724 3.276 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.165 0.835 28 H 0.156 0.844 29 H 0.157 0.843 30 H 0.049 0.951 31 H 0.119 0.881 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.028 0.972 35 H 0.056 0.944 36 H 0.004 0.996 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.808 -12.103 6.650 16.938 hybrid contribution -0.201 0.557 -0.751 0.957 sum 9.606 -11.546 5.898 16.136 Atomic orbital electron populations 1.23212 0.76033 1.03018 1.03134 1.86462 1.23514 1.33204 1.85295 1.20869 0.88620 0.81846 0.75045 1.90998 1.65797 1.34640 1.41186 1.18736 0.89882 0.93109 1.05595 1.21377 0.91895 0.99643 0.99324 1.17473 0.88953 0.82521 1.05510 1.91495 1.76678 1.49930 1.93841 1.21312 1.01087 0.91095 1.00677 1.20926 0.92586 0.98431 0.99963 1.20285 0.93507 0.94898 0.92575 1.21250 0.96963 0.90658 0.95606 1.62042 1.10282 1.51941 1.00358 1.22312 0.94241 0.97010 0.98073 1.19681 0.87791 0.86675 0.98279 1.21104 1.14229 1.16474 1.02144 0.92242 1.24954 0.97217 0.95432 0.96973 1.69952 1.28503 1.20462 1.35020 0.86606 0.79403 0.77676 0.83946 1.20321 1.21401 1.20382 0.92067 0.91237 0.88633 0.83535 0.84425 0.84310 0.95137 0.88099 0.93989 0.90602 0.97192 0.94358 0.99615 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.37 -5.54 9.83 -40.52 -0.40 -5.94 16 3 C 0.49 8.61 7.82 34.61 0.27 8.88 16 4 O -0.44 -9.24 11.85 -19.25 -0.23 -9.46 16 5 C -0.07 -1.10 5.87 -104.99 -0.62 -1.72 16 6 C -0.10 -1.34 9.59 -39.10 -0.38 -1.72 16 7 C 0.07 0.91 7.29 -39.47 -0.29 0.62 16 8 F -0.14 -1.70 17.26 2.25 0.04 -1.66 16 9 C -0.12 -1.35 10.02 -39.42 -0.39 -1.74 16 10 C -0.10 -1.23 9.44 -39.65 -0.37 -1.60 16 11 C -0.01 -0.18 4.66 -104.21 -0.49 -0.66 16 12 C 0.08 1.53 4.12 -4.97 -0.02 1.51 16 13 N -0.52 -11.52 3.68 -245.83 -0.90 -12.42 16 14 C 0.03 0.64 9.24 60.06 0.55 1.20 16 15 C 0.20 5.36 4.47 -4.98 -0.02 5.34 16 16 C -0.50 -14.38 8.39 -34.44 -0.29 -14.67 16 17 H 0.06 1.70 7.17 -52.48 -0.38 1.32 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 20 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.15 1.69 7.62 -52.49 -0.40 1.29 16 28 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 29 H 0.14 1.43 7.99 -52.48 -0.42 1.01 16 30 H 0.03 0.52 7.77 -51.93 -0.40 0.12 16 31 H 0.10 2.02 5.96 -51.93 -0.31 1.71 16 32 H 0.04 0.73 7.43 -51.93 -0.39 0.34 16 33 H 0.08 1.63 6.66 -51.93 -0.35 1.29 16 34 H 0.01 0.18 8.02 -51.93 -0.42 -0.23 16 35 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 36 H -0.01 -0.40 8.12 -51.93 -0.42 -0.82 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 318.76 15.07 4.80 4.80 Total: -1.00 -32.20 318.76 -6.74 -38.94 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.69 Total: -3.29 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -1.07 Total: -1.50 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: -0.17 Total: -38.91 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.63 Total: -15.40 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.20 -6.74 -38.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217187.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.100 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds