Wall clock time and date at job start Tue Mar 31 2020 05:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76198 * 103.00168 * 2 1 4 4 C 1.38918 * 120.02800 * 179.97438 * 3 2 1 5 5 C 1.38082 * 119.97655 * 180.02562 * 4 3 2 6 6 C 1.38712 * 120.02556 * 0.02847 * 5 4 3 7 7 O 1.35999 * 119.97338 * 179.97438 * 6 5 4 8 8 C 1.42903 * 116.99853 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47073 * 180.02562 * 8 7 6 10 10 N 1.46899 * 109.47570 * 64.99640 * 9 8 7 11 11 C 1.46893 * 111.00129 * 199.93783 * 10 9 8 12 12 C 1.46900 * 110.99754 * 75.98420 * 10 9 8 13 13 C 1.50704 * 109.47021 * 190.00129 * 12 10 9 14 14 H 1.07998 * 119.99857 * 0.02562 * 13 12 10 15 15 C 1.37879 * 120.00132 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00106 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 119.99853 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46990 * 90.00136 * 17 15 13 19 19 H 1.48498 * 109.47321 * 209.99882 * 17 15 13 20 20 H 1.48505 * 109.47414 * 330.00137 * 17 15 13 21 21 C 1.38707 * 120.05063 * 0.22812 * 6 5 4 22 22 C 1.38098 * 120.02240 * 359.49166 * 21 6 5 23 23 H 1.08997 * 109.47023 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47346 * 300.00037 * 1 2 3 25 25 H 1.08993 * 109.46960 * 60.00008 * 1 2 3 26 26 H 1.08001 * 120.01050 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.98853 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47084 * 299.99751 * 8 7 6 29 29 H 1.08996 * 109.47429 * 59.99970 * 8 7 6 30 30 H 1.09006 * 109.47205 * 184.99947 * 9 8 7 31 31 H 1.09003 * 109.46697 * 304.99210 * 9 8 7 32 32 H 1.09000 * 109.47078 * 64.51382 * 11 10 9 33 33 H 1.08998 * 109.47194 * 184.51427 * 11 10 9 34 34 H 1.09001 * 109.47174 * 304.51242 * 11 10 9 35 35 H 1.09005 * 109.47509 * 310.00016 * 12 10 9 36 36 H 1.09000 * 109.47441 * 70.00271 * 12 10 9 37 37 H 0.96998 * 119.99892 * 179.97438 * 16 15 13 38 38 H 1.07998 * 119.99095 * 179.74526 * 21 6 5 39 39 H 1.07998 * 120.01226 * 180.25533 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5387 2.1236 0.0005 5 6 3.8482 3.4693 0.0011 6 6 2.8333 4.4149 0.0017 7 8 3.1393 5.7400 0.0027 8 6 2.0446 6.6586 0.0039 9 6 2.5812 8.0914 0.0043 10 7 3.3004 8.3454 -1.2512 11 6 4.2115 9.4895 -1.1137 12 6 2.3624 8.5501 -2.3630 13 6 3.1215 8.5622 -3.6649 14 1 4.1934 8.4307 -3.6661 15 6 2.4474 8.7403 -4.8544 16 7 3.1098 8.7504 -5.9905 17 14 0.5931 8.9657 -4.8523 18 1 0.2703 10.4108 -4.7400 19 1 0.0278 8.4291 -6.1163 20 1 0.0070 8.2364 -3.6991 21 6 1.5066 4.0099 0.0065 22 6 1.1948 2.6646 0.0001 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 4.3291 1.3875 0.0005 27 1 4.8808 3.7857 0.0019 28 1 1.4357 6.4993 -0.8861 29 1 1.4362 6.4978 0.8938 30 1 1.7499 8.7907 0.0947 31 1 3.2610 8.2245 0.8459 32 1 4.9877 9.2505 -0.3867 33 1 4.6711 9.7058 -2.0781 34 1 3.6517 10.3610 -0.7744 35 1 1.6320 7.7410 -2.3759 36 1 1.8477 9.5021 -2.2337 37 1 2.6355 8.8752 -6.8273 38 1 0.7173 4.7470 0.0111 39 1 0.1618 2.3496 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083218343.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:25 Heat of formation + Delta-G solvation = -3.548147 kcal Electronic energy + Delta-G solvation = -19362.092638 eV Core-core repulsion = 16396.617256 eV Total energy + Delta-G solvation = -2965.475381 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.94673 -37.64239 -36.33079 -32.54043 -31.46381 -30.47136 -29.51645 -28.72007 -27.91701 -24.72010 -23.19261 -22.52465 -21.71988 -19.88144 -18.29492 -17.33099 -16.92784 -15.89860 -15.73584 -15.12928 -14.70660 -14.64535 -14.23566 -14.00708 -13.94942 -13.74044 -13.38105 -13.11037 -12.73997 -12.56836 -12.35066 -12.20892 -11.88813 -11.70939 -11.26929 -11.11346 -10.95876 -10.73452 -10.58275 -10.38023 -10.10405 -9.85714 -9.28728 -9.12382 -8.94814 -8.59505 -7.41409 -7.23622 -6.06522 -4.03578 1.30160 1.31801 1.43228 2.29838 3.24400 3.32114 3.32707 3.43451 3.70733 4.39078 4.65824 4.72239 4.80482 4.81993 4.83516 5.16521 5.24839 5.26452 5.32750 5.37014 5.47628 5.55188 5.57368 5.78624 5.91528 6.01642 6.05960 6.11891 6.21701 6.25916 6.37110 6.64780 6.69710 6.80260 6.92805 7.55752 7.62760 7.87808 7.99788 8.64195 9.03159 9.54831 11.06762 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017822 B = 0.003929 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.717420 B = 7125.279755 C = 7873.528175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.131 6.131 3 C -0.132 4.132 4 C -0.058 4.058 5 C -0.136 4.136 6 C 0.145 3.855 7 O -0.288 6.288 8 C 0.066 3.934 9 C 0.053 3.947 10 N -0.526 5.526 11 C 0.037 3.963 12 C 0.159 3.841 13 C -0.508 4.508 14 H 0.082 0.918 15 C 0.068 3.932 16 N -0.899 5.899 17 Si 0.874 3.126 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.269 1.269 21 C -0.196 4.196 22 C -0.090 4.090 23 H 0.105 0.895 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.132 0.868 27 H 0.138 0.862 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.010 0.990 35 H 0.026 0.974 36 H -0.017 1.017 37 H 0.264 0.736 38 H 0.130 0.870 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 -12.584 15.525 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.109 5.891 3 C -0.245 4.245 4 C -0.081 4.081 5 C -0.156 4.156 6 C 0.096 3.904 7 O -0.200 6.200 8 C -0.009 4.009 9 C -0.076 4.076 10 N -0.250 5.250 11 C -0.111 4.111 12 C 0.033 3.967 13 C -0.546 4.546 14 H 0.100 0.900 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.701 3.299 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.194 1.194 21 C -0.216 4.216 22 C -0.113 4.113 23 H 0.124 0.876 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.150 0.850 27 H 0.155 0.845 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.028 0.972 35 H 0.044 0.956 36 H 0.001 0.999 37 H 0.074 0.926 38 H 0.148 0.852 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.258 -13.909 15.212 21.047 hybrid contribution -2.721 2.009 -0.081 3.383 sum -6.979 -11.900 15.130 20.475 Atomic orbital electron populations 1.23622 0.95042 1.06804 1.05574 1.85293 1.06206 1.03914 1.93735 1.21403 0.96595 0.95930 1.10533 1.20517 0.94234 0.95056 0.98280 1.20389 0.99083 0.90777 1.05358 1.19143 0.92856 0.84439 0.93963 1.86245 1.34772 1.11890 1.87122 1.22948 0.88359 0.88963 1.00647 1.22100 0.97995 0.92659 0.94887 1.61916 1.20254 1.40298 1.02516 1.22255 0.95738 0.90450 1.02683 1.20262 0.91904 0.94078 0.90469 1.21024 0.96482 1.48870 0.88216 0.90007 1.24898 0.97877 0.95023 0.95509 1.69889 1.35750 1.50481 0.97681 0.86887 0.86672 0.78631 0.77667 1.20305 1.21081 1.19413 1.21175 0.95705 0.96515 1.08232 1.20886 0.98025 0.92370 1.00053 0.87648 0.89952 0.89795 0.85038 0.84451 0.91475 0.92522 0.93374 0.90681 0.93138 0.89857 0.97180 0.95648 0.99893 0.92650 0.85234 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.15 101.05 0.92 -0.15 16 2 S -0.13 -1.41 22.56 -107.50 -2.43 -3.84 16 3 C -0.13 -1.69 6.11 -39.08 -0.24 -1.93 16 4 C -0.06 -0.75 9.79 -39.39 -0.39 -1.13 16 5 C -0.14 -1.93 9.98 -39.46 -0.39 -2.32 16 6 C 0.14 2.25 6.69 -39.23 -0.26 1.99 16 7 O -0.29 -4.96 10.09 -19.74 -0.20 -5.16 16 8 C 0.07 1.03 4.93 37.16 0.18 1.21 16 9 C 0.05 0.86 5.38 -3.82 -0.02 0.84 16 10 N -0.53 -11.02 4.63 -244.37 -1.13 -12.15 16 11 C 0.04 0.71 9.36 60.06 0.56 1.27 16 12 C 0.16 3.84 3.62 -4.97 -0.02 3.82 16 13 C -0.51 -14.49 8.95 -34.44 -0.31 -14.80 16 14 H 0.08 2.56 7.41 -52.49 -0.39 2.17 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 17 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 21 C -0.20 -2.72 9.03 -39.46 -0.36 -3.08 16 22 C -0.09 -1.13 9.36 -39.38 -0.37 -1.50 16 23 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 0.56 7.75 -51.92 -0.40 0.16 16 25 H 0.08 0.63 7.74 -51.93 -0.40 0.22 16 26 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 27 H 0.14 1.80 8.06 -52.48 -0.42 1.37 16 28 H 0.07 1.14 6.20 -51.93 -0.32 0.81 16 29 H 0.06 0.69 7.65 -51.93 -0.40 0.30 16 30 H 0.05 0.73 8.00 -51.93 -0.42 0.32 16 31 H 0.07 1.10 7.93 -51.93 -0.41 0.69 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.78 6.67 -51.93 -0.35 1.44 16 34 H 0.01 0.17 8.13 -51.93 -0.42 -0.25 16 35 H 0.03 0.62 5.64 -51.93 -0.29 0.33 16 36 H -0.02 -0.39 7.55 -51.93 -0.39 -0.79 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.13 1.62 6.29 -52.49 -0.33 1.29 16 39 H 0.12 1.24 5.87 -52.49 -0.31 0.94 16 LS Contribution 330.79 15.07 4.98 4.98 Total: -1.00 -31.92 330.79 -9.13 -41.06 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.69 Total: -0.89 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -0.78 Total: -13.89 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.36 Total: -39.02 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.20 Total: -5.16 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -2.43 Total: -3.84 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.92 -9.13 -41.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218343.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.508 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds