Wall clock time and date at job start Tue Mar 31 2020 05:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47349 * 2 1 4 4 C 1.36932 * 120.00124 * 92.36495 * 3 2 1 5 5 H 1.08004 * 120.00504 * 33.91636 * 4 3 2 6 6 C 1.38814 * 119.99939 * 214.19188 * 4 3 2 7 7 N 1.31616 * 120.00212 * 22.66472 * 6 4 3 8 8 Si 1.86807 * 119.99898 * 202.66184 * 6 4 3 9 9 H 1.48498 * 109.47267 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46634 * 120.00203 * 8 6 4 11 11 H 1.48502 * 109.47155 * 240.00037 * 8 6 4 12 12 C 1.46501 * 120.00011 * 272.36887 * 3 2 1 13 13 C 1.50699 * 109.47063 * 269.99833 * 12 3 2 14 14 C 1.38475 * 119.82102 * 269.72266 * 13 12 3 15 15 C 1.37841 * 120.22290 * 179.76183 * 14 13 12 16 16 C 1.39712 * 119.87167 * 0.49368 * 15 14 13 17 17 C 1.47569 * 120.17415 * 179.74281 * 16 15 14 18 18 O 1.21487 * 120.00234 * 180.02562 * 17 16 15 19 19 O 1.34731 * 119.99614 * 0.02562 * 17 16 15 20 20 C 1.45197 * 116.99891 * 179.97438 * 19 17 16 21 21 C 1.39881 * 119.65724 * 359.75971 * 16 15 14 22 22 F 1.35103 * 120.11473 * 179.97438 * 21 16 15 23 23 C 1.38197 * 119.82808 * 89.99790 * 13 12 3 24 24 H 1.08998 * 109.47047 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47470 * 300.00230 * 1 2 3 26 26 H 1.08999 * 109.46947 * 60.00381 * 1 2 3 27 27 H 1.08998 * 109.47470 * 239.99770 * 2 1 3 28 28 H 1.08999 * 109.47417 * 119.99869 * 2 1 3 29 29 H 0.96998 * 120.00458 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47127 * 29.99485 * 12 3 2 31 31 H 1.08997 * 109.47026 * 149.99473 * 12 3 2 32 32 H 1.08000 * 119.88865 * 359.97438 * 14 13 12 33 33 H 1.08001 * 120.05944 * 180.22744 * 15 14 13 34 34 H 1.08993 * 109.47440 * 300.00056 * 20 19 17 35 35 H 1.08999 * 109.46998 * 59.99826 * 20 19 17 36 36 H 1.08994 * 109.47155 * 179.97438 * 20 19 17 37 37 H 1.08007 * 119.94027 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2927 2.0104 1.1848 5 1 2.6836 1.4457 2.0184 6 6 2.0632 3.3731 1.3165 7 7 1.2018 3.9749 0.5239 8 14 2.9767 4.3526 2.6186 9 1 3.8818 3.4492 3.3734 10 1 3.7757 5.4201 1.9650 11 1 1.9990 4.9674 3.5522 12 6 2.2131 2.0893 -1.2676 13 6 3.6183 1.8588 -1.7610 14 6 4.6295 2.7295 -1.3909 15 6 5.9187 2.5238 -1.8334 16 6 6.2037 1.4390 -2.6664 17 6 7.5804 1.2157 -3.1486 18 8 7.8246 0.2717 -3.8732 19 8 8.5664 2.0589 -2.7852 20 6 9.8960 1.7777 -3.2965 21 6 5.1772 0.5657 -3.0413 22 9 5.4424 -0.4859 -3.8469 23 6 3.8898 0.7831 -2.5849 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.0411 4.9271 0.6161 30 1 1.5031 1.7154 -2.0054 31 1 2.0516 3.1565 -1.1162 32 1 4.4080 3.5705 -0.7507 33 1 6.7060 3.2024 -1.5401 34 1 10.2143 0.7917 -2.9583 35 1 9.8784 1.7998 -4.3861 36 1 10.5932 2.5307 -2.9294 37 1 3.0952 0.1105 -2.8727 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089120761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:10 Heat of formation + Delta-G solvation = -100.059916 kcal Electronic energy + Delta-G solvation = -22026.469526 eV Core-core repulsion = 18490.595904 eV Total energy + Delta-G solvation = -3535.873622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.00917 -41.54788 -39.99911 -37.66512 -37.42223 -33.81457 -33.31824 -31.62148 -30.53734 -28.95841 -27.60176 -25.59598 -23.98677 -23.70690 -22.23448 -21.63031 -19.15400 -18.87251 -18.21783 -17.74462 -17.53510 -17.04215 -16.64035 -16.59392 -15.88380 -15.73081 -15.56747 -15.10898 -14.53933 -14.39844 -14.38008 -14.14926 -13.69449 -13.32502 -13.15619 -12.99236 -12.85648 -12.81589 -12.43695 -12.39205 -12.17504 -11.99651 -11.85414 -11.81867 -11.59851 -11.50283 -10.54720 -10.04500 -9.74799 -8.63855 -7.84104 -5.38865 -0.47324 0.20543 1.38651 1.48003 1.54480 1.58848 1.62266 2.51165 2.62046 3.06259 3.26163 3.55595 3.76013 3.80084 3.98382 4.21889 4.29265 4.32068 4.32172 4.45685 4.65586 4.70863 4.74209 4.85303 4.89025 4.94505 5.03765 5.11563 5.14322 5.24786 5.31036 5.51923 5.60558 5.73816 5.76751 5.85210 6.47056 6.58218 7.15084 7.82998 8.34848 9.13979 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018014 B = 0.005448 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.942489 B = 5138.689649 C = 6319.799351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.135 3.865 3 N -0.588 5.588 4 C -0.261 4.261 5 H 0.054 0.946 6 C -0.024 4.024 7 N -0.908 5.908 8 Si 0.943 3.057 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.296 1.296 12 C 0.168 3.832 13 C -0.013 4.013 14 C -0.131 4.131 15 C -0.022 4.022 16 C -0.196 4.196 17 C 0.516 3.484 18 O -0.532 6.532 19 O -0.354 6.354 20 C 0.029 3.971 21 C 0.148 3.852 22 F -0.131 7.131 23 C -0.163 4.163 24 H 0.065 0.935 25 H 0.028 0.972 26 H 0.038 0.962 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.255 0.745 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.166 0.834 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.138 0.862 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.487 -2.204 -6.139 12.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.010 3.990 3 N -0.308 5.308 4 C -0.391 4.391 5 H 0.072 0.928 6 C -0.222 4.222 7 N -0.551 5.551 8 Si 0.771 3.229 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.223 1.223 12 C 0.042 3.958 13 C -0.017 4.017 14 C -0.150 4.150 15 C -0.040 4.040 16 C -0.199 4.199 17 C 0.362 3.638 18 O -0.423 6.423 19 O -0.270 6.270 20 C -0.064 4.064 21 C 0.128 3.872 22 F -0.110 7.110 23 C -0.183 4.183 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.146 0.854 33 H 0.183 0.817 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.156 0.844 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.527 -2.377 -6.358 12.526 hybrid contribution 0.321 0.274 0.488 0.645 sum 10.848 -2.103 -5.871 12.513 Atomic orbital electron populations 1.22121 0.98480 1.00214 1.00278 1.21059 0.92781 0.85720 0.99431 1.43990 1.74168 1.11188 1.01416 1.19242 1.35983 0.92004 0.91862 0.92805 1.25559 0.97714 0.99133 0.99825 1.70059 1.32876 1.10307 1.41872 0.85608 0.78671 0.79050 0.79553 1.19779 1.20530 1.22322 1.20069 0.87858 1.01535 0.86355 1.21310 0.99823 0.91200 0.89328 1.21196 0.92266 1.00837 1.00712 1.21464 0.97283 0.93882 0.91408 1.19086 0.89883 1.01897 1.09031 1.20970 0.86055 0.79593 0.77136 1.90843 1.84202 1.31079 1.36203 1.86536 1.19746 1.51859 1.68841 1.23626 0.78489 1.04023 1.00250 1.17810 0.93410 0.84692 0.91243 1.91524 1.94667 1.54407 1.70361 1.21065 0.94633 1.00750 1.01816 0.91588 0.95263 0.94324 0.92719 0.93809 0.93584 0.93353 0.89145 0.85441 0.81699 0.91897 0.91719 0.84393 0.83214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 10.24 71.98 0.74 -4.76 16 2 C 0.14 5.20 6.39 86.38 0.55 5.75 16 3 N -0.59 -26.51 2.43 -706.36 -1.72 -28.23 16 4 C -0.26 -13.08 9.47 84.03 0.80 -12.28 16 5 H 0.05 2.77 7.93 -2.91 -0.02 2.75 16 6 C -0.02 -1.22 4.96 84.86 0.42 -0.80 16 7 N -0.91 -47.91 11.31 21.65 0.24 -47.66 16 8 Si 0.94 40.88 29.61 68.60 2.03 42.91 16 9 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.30 -13.12 7.11 99.48 0.71 -12.41 16 12 C 0.17 7.03 5.42 85.63 0.46 7.50 16 13 C -0.01 -0.47 5.47 -19.82 -0.11 -0.58 16 14 C -0.13 -4.56 9.67 22.23 0.22 -4.34 16 15 C -0.02 -0.67 9.61 22.53 0.22 -0.45 16 16 C -0.20 -6.35 5.88 -20.06 -0.12 -6.47 16 17 C 0.52 16.28 7.89 70.28 0.55 16.83 16 18 O -0.53 -19.26 15.13 19.88 0.30 -18.96 16 19 O -0.35 -8.96 9.82 -56.42 -0.55 -9.52 16 20 C 0.03 0.50 10.56 113.37 1.20 1.70 16 21 C 0.15 5.05 7.29 22.69 0.17 5.21 16 22 F -0.13 -4.68 15.55 44.97 0.70 -3.99 16 23 C -0.16 -5.43 9.66 22.28 0.22 -5.22 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.86 8.09 -2.39 -0.02 1.85 16 28 H 0.04 1.68 8.02 -2.39 -0.02 1.67 16 29 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 30 H 0.05 1.90 8.01 -2.39 -0.02 1.89 16 31 H 0.09 4.34 5.25 -2.39 -0.01 4.33 16 32 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 33 H 0.17 4.00 7.61 -2.91 -0.02 3.97 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -59.36 325.87 7.38 -51.98 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.07 Total: 11.39 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 5.31 Total: 2.09 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -1.47 Total: -75.90 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.25 Total: -28.48 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.70 Total: -3.99 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -59.36 7.38 -51.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089120761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.082 kcal (2) G-P(sol) polarization free energy of solvation -59.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds