Wall clock time and date at job start Tue Mar 31 2020 05:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34733 * 117.00157 * 2 1 4 4 O 1.21493 * 119.99468 * 0.02562 * 3 2 1 5 5 C 1.47560 * 120.00156 * 180.02562 * 3 2 1 6 6 C 1.39715 * 120.17224 * 0.02562 * 5 3 2 7 7 C 1.37835 * 119.87076 * 179.97438 * 6 5 3 8 8 C 1.38470 * 120.22966 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.82786 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.46990 * 89.99925 * 9 8 7 11 11 C 1.46911 * 110.99785 * 66.04842 * 10 9 8 12 12 C 1.46898 * 110.99954 * 189.99845 * 10 9 8 13 13 C 1.50704 * 109.47162 * 170.00113 * 12 10 9 14 14 H 1.07999 * 119.99542 * 0.02562 * 13 12 10 15 15 C 1.37877 * 120.00245 * 180.02562 * 13 12 10 16 16 N 1.31517 * 119.99812 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00085 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47133 * 60.00065 * 17 15 13 19 19 H 1.48493 * 109.47263 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47145 * 300.00072 * 17 15 13 21 21 C 1.38209 * 120.34826 * 359.76359 * 8 7 6 22 22 C 1.38318 * 120.11941 * 0.51369 * 21 8 7 23 23 F 1.35104 * 120.11114 * 179.73979 * 22 21 8 24 24 H 1.09005 * 109.47323 * 59.99148 * 1 2 3 25 25 H 1.08996 * 109.47164 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46932 * 299.99579 * 1 2 3 27 27 H 1.07993 * 120.06635 * 0.02562 * 6 5 3 28 28 H 1.08007 * 119.88832 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.47078 * 209.99849 * 9 8 7 30 30 H 1.09001 * 109.47444 * 330.00272 * 9 8 7 31 31 H 1.09005 * 109.46822 * 59.99899 * 11 10 9 32 32 H 1.09001 * 109.46876 * 179.97438 * 11 10 9 33 33 H 1.08999 * 109.47033 * 299.99908 * 11 10 9 34 34 H 1.09001 * 109.47228 * 290.00041 * 12 10 9 35 35 H 1.08998 * 109.47243 * 50.00597 * 12 10 9 36 36 H 0.96996 * 119.99965 * 180.02562 * 16 15 13 37 37 H 1.08001 * 119.93976 * 180.27958 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4019 2.2193 0.0005 5 6 3.5372 1.2777 -0.0006 6 6 4.3017 0.1082 -0.0017 7 6 5.6778 0.1876 -0.0027 8 6 6.3049 1.4222 -0.0033 9 6 7.8099 1.4984 -0.0050 10 7 8.2973 1.5234 -1.3906 11 6 7.8841 2.7577 -2.0718 12 6 9.7563 1.3589 -1.4385 13 6 10.1910 1.1436 -2.8653 14 1 9.4568 1.1307 -3.6573 15 6 11.5258 0.9630 -3.1596 16 7 12.4197 0.9782 -2.1950 17 14 12.0647 0.6969 -4.9282 18 1 11.6725 1.8718 -5.7473 19 1 13.5394 0.5305 -4.9767 20 1 11.4104 -0.5226 -5.4669 21 6 5.5577 2.5849 -0.0076 22 6 4.1760 2.5221 -0.0008 23 9 3.4458 3.6589 0.0002 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 3.8154 -0.8560 -0.0025 28 1 6.2690 -0.7163 -0.0040 29 1 8.1284 2.4056 0.5086 30 1 8.2185 0.6279 0.5082 31 1 8.2917 3.6188 -1.5423 32 1 8.2584 2.7504 -3.0955 33 1 6.7959 2.8196 -2.0829 34 1 10.2361 2.2545 -1.0437 35 1 10.0447 0.4969 -0.8369 36 1 13.3588 0.8516 -2.4020 37 1 6.0537 3.5443 -0.0126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089138880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:38 Heat of formation + Delta-G solvation = -98.680314 kcal Electronic energy + Delta-G solvation = -21310.486701 eV Core-core repulsion = 17774.672903 eV Total energy + Delta-G solvation = -3535.813798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.94189 -40.60083 -39.17210 -36.66174 -36.33679 -32.91298 -31.75874 -30.71842 -28.40184 -27.25411 -26.87481 -24.49429 -22.85810 -22.55575 -21.05911 -20.30226 -18.20394 -17.41187 -16.85791 -16.62014 -16.39171 -16.05243 -15.59758 -15.02865 -14.83061 -14.46453 -14.35429 -13.95394 -13.62434 -13.51795 -13.26381 -12.82495 -12.40063 -12.16538 -11.99653 -11.92845 -11.46797 -11.43250 -11.08946 -11.02695 -10.93230 -10.75704 -10.62988 -10.48196 -9.94207 -9.33384 -9.11484 -8.79871 -8.48647 -7.40180 -6.08395 -4.10103 0.46514 1.11262 2.36472 2.43473 3.30797 3.35013 3.37800 3.50643 4.02381 4.37967 4.42832 4.62509 4.77674 4.85413 4.93188 5.04482 5.05789 5.18002 5.24845 5.28085 5.57418 5.64431 5.81050 5.95859 5.97381 6.03409 6.09188 6.14660 6.22478 6.50224 6.67541 6.70060 7.16211 7.23056 7.54025 7.70727 7.96072 8.07491 8.43245 8.96917 9.54402 11.02417 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030981 B = 0.003271 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.565121 B = 8557.506240 C = 8781.186933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.354 6.354 3 C 0.511 3.489 4 O -0.500 6.500 5 C -0.179 4.179 6 C -0.034 4.034 7 C -0.124 4.124 8 C 0.009 3.991 9 C 0.080 3.920 10 N -0.533 5.533 11 C 0.031 3.969 12 C 0.193 3.807 13 C -0.510 4.510 14 H 0.064 0.936 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.164 4.164 22 C 0.163 3.837 23 F -0.119 7.119 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.063 0.937 27 H 0.146 0.854 28 H 0.143 0.857 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.013 0.987 32 H 0.077 0.923 33 H 0.048 0.952 34 H -0.007 1.007 35 H 0.032 0.968 36 H 0.263 0.737 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.511 -1.878 6.680 19.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.271 6.271 3 C 0.356 3.644 4 O -0.388 6.388 5 C -0.182 4.182 6 C -0.053 4.053 7 C -0.142 4.142 8 C 0.008 3.992 9 C -0.048 4.048 10 N -0.257 5.257 11 C -0.118 4.118 12 C 0.068 3.932 13 C -0.548 4.548 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.183 4.183 22 C 0.143 3.857 23 F -0.097 7.097 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.081 0.919 27 H 0.163 0.837 28 H 0.160 0.840 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.032 0.968 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.011 0.989 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.765 -1.953 6.460 19.941 hybrid contribution 0.433 0.847 -0.537 1.092 sum -18.332 -1.106 5.923 19.297 Atomic orbital electron populations 1.23278 0.75932 1.03748 1.02657 1.86535 1.23551 1.32470 1.84544 1.20953 0.88743 0.81620 0.73100 1.90887 1.66648 1.35797 1.45480 1.19030 0.89691 0.93862 1.15584 1.21334 0.93678 0.97148 0.93092 1.21168 0.93767 0.98342 1.00964 1.20198 0.96888 0.91928 0.90227 1.21214 0.88570 1.01892 0.93152 1.62208 1.17199 1.35660 1.10645 1.22344 0.98688 0.89996 1.00749 1.19778 0.79209 0.96089 0.98094 1.21099 0.92102 1.48975 0.92641 0.91825 1.24981 0.96597 0.95429 0.97524 1.69941 1.01732 1.50246 1.31890 0.86543 0.77298 0.78842 0.84633 1.20264 1.21342 1.20098 1.21085 0.90841 1.00633 1.05765 1.17614 0.89102 0.80836 0.98132 1.91579 1.77294 1.48004 1.92860 0.91804 0.87891 0.91852 0.83659 0.83953 0.94145 0.89452 0.96811 0.90407 0.93363 0.98885 0.94974 0.92789 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.35 -3.92 9.82 -40.58 -0.40 -4.32 16 3 C 0.51 6.96 7.89 34.53 0.27 7.23 16 4 O -0.50 -8.06 15.13 -19.26 -0.29 -8.35 16 5 C -0.18 -2.38 5.88 -104.93 -0.62 -3.00 16 6 C -0.03 -0.39 9.62 -39.18 -0.38 -0.77 16 7 C -0.12 -1.51 9.67 -39.64 -0.38 -1.89 16 8 C 0.01 0.12 4.90 -104.55 -0.51 -0.39 16 9 C 0.08 1.27 5.11 -4.98 -0.03 1.25 16 10 N -0.53 -10.71 4.74 -245.81 -1.17 -11.87 16 11 C 0.03 0.57 8.93 60.07 0.54 1.11 16 12 C 0.19 4.76 4.72 -4.97 -0.02 4.74 16 13 C -0.51 -13.83 8.46 -34.44 -0.29 -14.12 16 14 H 0.06 1.71 7.12 -52.49 -0.37 1.34 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 17 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 C -0.16 -2.21 7.90 -39.56 -0.31 -2.52 16 22 C 0.16 2.31 7.29 -38.94 -0.28 2.03 16 23 F -0.12 -1.86 15.55 2.25 0.04 -1.82 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.15 1.30 7.61 -52.49 -0.40 0.90 16 28 H 0.14 1.56 8.06 -52.48 -0.42 1.13 16 29 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 30 H 0.09 1.34 7.87 -51.93 -0.41 0.93 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 1.58 6.76 -51.93 -0.35 1.23 16 33 H 0.05 0.79 6.14 -51.93 -0.32 0.47 16 34 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 35 H 0.03 0.84 7.93 -51.93 -0.41 0.42 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.14 1.79 8.00 -52.49 -0.42 1.37 16 LS Contribution 322.34 15.07 4.86 4.86 Total: -1.00 -31.13 322.34 -7.07 -38.20 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -4.77 Total: -4.07 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.05 Total: -3.52 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: -0.43 Total: -37.12 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.69 Total: -12.67 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.13 -7.07 -38.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089138880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.484 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds