Wall clock time and date at job start Tue Mar 31 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38132 * 120.02397 * 2 1 4 4 C 1.38235 * 120.08763 * 180.25186 * 3 2 1 5 5 C 1.38426 * 120.13856 * 359.74870 * 4 3 2 6 6 Cl 1.73605 * 119.97980 * 179.97438 * 5 4 3 7 7 C 1.38200 * 120.04553 * 0.02562 * 5 4 3 8 8 C 1.38897 * 120.02667 * 179.76662 * 2 1 3 9 9 N 1.39675 * 120.06415 * 0.02562 * 8 2 1 10 10 C 1.46507 * 119.99622 * 179.72204 * 9 8 2 11 11 C 1.53004 * 109.46773 * 179.97438 * 10 9 8 12 12 C 1.52994 * 109.47090 * 299.99965 * 11 10 9 13 13 C 1.53000 * 109.46978 * 59.99951 * 11 10 9 14 14 C 1.53000 * 109.46662 * 179.97438 * 11 10 9 15 15 C 1.50697 * 109.46964 * 179.97438 * 14 11 10 16 16 H 1.08002 * 119.99866 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00512 * 180.02562 * 15 14 11 18 18 N 1.31515 * 120.00500 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99684 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47230 * 89.99639 * 19 17 15 21 21 H 1.48503 * 109.47410 * 210.00359 * 19 17 15 22 22 H 1.48506 * 109.46908 * 330.00248 * 19 17 15 23 23 H 1.08994 * 109.47332 * 270.22858 * 1 2 3 24 24 H 1.08998 * 109.46779 * 30.22985 * 1 2 3 25 25 H 1.09000 * 109.46656 * 150.23058 * 1 2 3 26 26 H 1.08007 * 119.95643 * 0.02562 * 3 2 1 27 27 H 1.08000 * 119.93636 * 179.72080 * 4 3 2 28 28 H 1.08000 * 120.04575 * 179.97438 * 7 5 4 29 29 H 0.96995 * 120.00164 * 359.44626 * 9 8 2 30 30 H 1.09000 * 109.46860 * 299.99623 * 10 9 8 31 31 H 1.08997 * 109.47067 * 60.00272 * 10 9 8 32 32 H 1.09005 * 109.47504 * 60.00171 * 12 11 10 33 33 H 1.09008 * 109.46837 * 180.02562 * 12 11 10 34 34 H 1.09002 * 109.47168 * 299.99820 * 12 11 10 35 35 H 1.09005 * 109.47057 * 59.99939 * 13 11 10 36 36 H 1.08996 * 109.46841 * 179.97438 * 13 11 10 37 37 H 1.08996 * 109.47481 * 300.00070 * 13 11 10 38 38 H 1.08992 * 109.47247 * 300.00161 * 14 11 10 39 39 H 1.08997 * 109.46945 * 60.00595 * 14 11 10 40 40 H 0.96998 * 120.00171 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1960 0.0000 4 6 3.5805 1.1975 -0.0053 5 6 4.2769 0.0012 -0.0053 6 17 6.0129 0.0079 -0.0126 7 6 3.5911 -1.1987 -0.0006 8 6 2.2021 -1.2025 0.0049 9 7 1.5056 -2.4133 0.0093 10 6 2.2402 -3.6809 0.0083 11 6 1.2478 -4.8454 0.0144 12 6 0.3734 -4.7636 1.2672 13 6 0.3629 -4.7677 -1.2313 14 6 2.0150 -6.1691 0.0127 15 6 1.0376 -7.3161 0.0194 16 1 -0.0245 -7.1205 0.0239 17 6 1.4992 -8.6153 0.0197 18 7 0.6463 -9.6163 0.0250 19 14 3.3363 -8.9537 0.0126 20 1 3.8290 -9.0409 1.4108 21 1 3.6007 -10.2370 -0.6864 22 1 4.0399 -7.8521 -0.6923 23 1 -0.3634 0.0041 1.0276 24 1 -0.3633 0.8879 -0.5174 25 1 -0.3632 -0.8921 -0.5103 26 1 1.6578 2.1312 0.0004 27 1 4.1184 2.1340 -0.0098 28 1 4.1344 -2.1321 -0.0010 29 1 0.5357 -2.4148 0.0170 30 1 2.8635 -3.7388 -0.8840 31 1 2.8703 -3.7363 0.8960 32 1 -0.1732 -3.8205 1.2679 33 1 -0.3333 -5.5936 1.2717 34 1 1.0039 -4.8190 2.1546 35 1 0.9859 -4.8259 -2.1238 36 1 -0.3438 -5.5976 -1.2271 37 1 -0.1836 -3.8247 -1.2306 38 1 2.6377 -6.2270 -0.8799 39 1 2.6457 -6.2246 0.9000 40 1 0.9711 -10.5303 0.0248 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092108289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:10 Heat of formation + Delta-G solvation = -4.261543 kcal Electronic energy + Delta-G solvation = -19739.125701 eV Core-core repulsion = 16771.575678 eV Total energy + Delta-G solvation = -2967.550023 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.85086 -37.70755 -36.54575 -34.34662 -32.58541 -32.21220 -29.47709 -27.74067 -26.75288 -26.59305 -25.95953 -22.88640 -21.50101 -21.24985 -18.33866 -17.40351 -16.91030 -16.15400 -15.40062 -14.70984 -14.57269 -14.38271 -13.91782 -13.81214 -13.59336 -13.34304 -12.93292 -12.84337 -12.71502 -12.50517 -12.31038 -11.54716 -11.51141 -11.33774 -11.23310 -11.10881 -11.04012 -10.91935 -10.66187 -10.51022 -10.11752 -9.83641 -9.76373 -9.56733 -9.03801 -8.68126 -8.57144 -7.33510 -6.07554 -4.05138 1.17954 1.51299 2.12110 3.28006 3.36373 3.38935 3.57380 3.68838 4.41933 4.72937 4.88913 5.05563 5.20305 5.24531 5.27510 5.44591 5.48781 5.51846 5.54572 5.59637 5.72883 5.90872 5.99810 6.04688 6.08164 6.15775 6.26717 6.31405 6.41695 6.51704 6.55556 6.68844 6.83706 6.97327 7.00582 7.14169 7.31324 7.36244 7.74372 7.81268 8.49347 8.96421 9.54864 11.05222 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020101 B = 0.004183 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.648301 B = 6691.648717 C = 7882.627604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.167 4.167 3 C -0.061 4.061 4 C -0.179 4.179 5 C 0.013 3.987 6 Cl -0.081 7.081 7 C -0.192 4.192 8 C 0.238 3.762 9 N -0.731 5.731 10 C 0.126 3.874 11 C -0.061 4.061 12 C -0.128 4.128 13 C -0.128 4.128 14 C -0.002 4.002 15 C -0.512 4.512 16 H 0.078 0.922 17 C 0.067 3.933 18 N -0.903 5.903 19 Si 0.875 3.125 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.266 1.266 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.132 0.868 29 H 0.402 0.598 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.018 0.982 39 H 0.013 0.987 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 21.002 -0.057 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.172 4.172 3 C -0.080 4.080 4 C -0.200 4.200 5 C -0.014 4.014 6 Cl -0.052 7.052 7 C -0.216 4.216 8 C 0.131 3.869 9 N -0.360 5.360 10 C 0.002 3.998 11 C -0.061 4.061 12 C -0.185 4.185 13 C -0.185 4.185 14 C -0.039 4.039 15 C -0.550 4.550 16 H 0.096 0.904 17 C -0.134 4.134 18 N -0.542 5.542 19 Si 0.702 3.298 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.191 1.191 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.144 0.856 27 H 0.143 0.857 28 H 0.150 0.850 29 H 0.240 0.760 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.036 0.964 39 H 0.031 0.969 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.363 20.583 -0.065 20.856 hybrid contribution 0.910 -0.422 0.022 1.003 sum 4.273 20.161 -0.043 20.608 Atomic orbital electron populations 1.20599 0.91132 1.02463 1.02050 1.19443 0.96038 0.91673 1.10033 1.20650 0.93036 0.96982 0.97355 1.20664 0.94068 0.96363 1.08891 1.20575 0.83644 0.94705 1.02489 1.98356 1.10960 1.98980 1.96890 1.20475 0.92416 0.97506 1.11191 1.17529 0.90542 0.86272 0.92520 1.45099 1.08644 1.02467 1.79794 1.21685 0.95111 0.82374 1.00642 1.20648 0.95177 0.94523 0.95785 1.21765 0.99792 1.00249 0.96730 1.21759 0.99733 1.00232 0.96780 1.19590 0.96008 0.91921 0.96417 1.21070 0.94398 0.88991 1.50533 0.90420 1.24998 0.97343 0.96345 0.94700 1.69898 1.34115 0.98985 1.51215 0.86861 0.86609 0.77791 0.78501 1.20360 1.21460 1.19057 0.91494 0.91477 0.92047 0.85577 0.85741 0.84989 0.75969 0.92408 0.92424 0.95019 0.90914 0.93434 0.93428 0.90912 0.95047 0.96420 0.96874 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.57 36.01 0.34 -0.62 16 2 C -0.17 -1.90 5.90 -104.42 -0.62 -2.52 16 3 C -0.06 -0.63 9.69 -39.62 -0.38 -1.02 16 4 C -0.18 -1.98 9.83 -39.51 -0.39 -2.37 16 5 C 0.01 0.16 6.32 -39.53 -0.25 -0.09 16 6 Cl -0.08 -0.96 28.95 -51.86 -1.50 -2.46 16 7 C -0.19 -2.59 9.09 -39.35 -0.36 -2.94 16 8 C 0.24 3.13 6.63 -83.79 -0.56 2.57 16 9 N -0.73 -9.77 5.03 -58.63 -0.30 -10.07 16 10 C 0.13 1.92 3.80 -4.04 -0.02 1.91 16 11 C -0.06 -1.08 0.54 -154.51 -0.08 -1.16 16 12 C -0.13 -2.19 8.05 37.15 0.30 -1.90 16 13 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 14 C 0.00 -0.03 3.11 -27.88 -0.09 -0.12 16 15 C -0.51 -13.52 8.20 -34.44 -0.28 -13.81 16 16 H 0.08 2.18 5.92 -52.49 -0.31 1.87 16 17 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 19 Si 0.87 21.18 27.47 -169.99 -4.67 16.51 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 25 H 0.06 0.57 6.55 -51.93 -0.34 0.23 16 26 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 27 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 28 H 0.13 1.80 6.73 -52.49 -0.35 1.45 16 29 H 0.40 5.03 4.16 -40.82 -0.17 4.86 16 30 H 0.06 0.90 7.95 -51.93 -0.41 0.48 16 31 H 0.06 0.89 7.95 -51.93 -0.41 0.48 16 32 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 33 H 0.07 1.41 6.62 -51.92 -0.34 1.07 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 37 H 0.03 0.45 6.87 -51.93 -0.36 0.09 16 38 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 39 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -28.33 328.35 -8.79 -37.11 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.87 Total: 2.32 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -2.17 Total: -22.17 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.48 Total: -36.27 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.33 -8.79 -37.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092108289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.853 kcal (2) G-P(sol) polarization free energy of solvation -28.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds