Wall clock time and date at job start Tue Mar 31 2020 05:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38240 * 120.03979 * 2 1 4 4 Cl 1.73597 * 119.97828 * 0.02562 * 3 2 1 5 5 C 1.38380 * 120.04352 * 179.97438 * 3 2 1 6 6 C 1.38284 * 120.13805 * 0.02753 * 5 3 2 7 7 C 1.38091 * 120.08962 * 359.71405 * 6 5 3 8 8 C 1.38861 * 120.04410 * 180.02562 * 2 1 3 9 9 N 1.39679 * 120.06907 * 359.97438 * 8 2 1 10 10 C 1.46496 * 119.99847 * 179.97438 * 9 8 2 11 11 C 1.53006 * 109.46995 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46626 * 299.99666 * 11 10 9 13 13 C 1.52997 * 109.47164 * 59.99963 * 11 10 9 14 14 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 11 10 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 11 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 11 18 18 N 1.31516 * 119.99685 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00129 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46672 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46691 * 119.99941 * 19 17 15 22 22 H 1.48497 * 109.47025 * 240.00323 * 19 17 15 23 23 H 1.08998 * 109.46940 * 269.97474 * 1 2 3 24 24 H 1.08997 * 109.47286 * 29.97961 * 1 2 3 25 25 H 1.09002 * 109.47181 * 149.97812 * 1 2 3 26 26 H 1.08001 * 119.93211 * 180.02562 * 5 3 2 27 27 H 1.08004 * 119.95588 * 180.02562 * 6 5 3 28 28 H 1.07997 * 120.02823 * 180.27351 * 7 6 5 29 29 H 0.96998 * 119.99961 * 0.02562 * 9 8 2 30 30 H 1.09001 * 109.47464 * 60.00544 * 10 9 8 31 31 H 1.09001 * 109.47459 * 300.00260 * 10 9 8 32 32 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 33 33 H 1.09002 * 109.46719 * 180.02562 * 12 11 10 34 34 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 35 35 H 1.09001 * 109.47375 * 59.99966 * 13 11 10 36 36 H 1.09002 * 109.46777 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.47140 * 299.99948 * 13 11 10 38 38 H 1.09001 * 109.47289 * 299.99953 * 14 11 10 39 39 H 1.09004 * 109.47261 * 59.99697 * 14 11 10 40 40 H 0.96999 * 119.99910 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1967 0.0000 4 17 1.3316 2.7004 0.0007 5 6 3.5829 1.1968 0.0005 6 6 4.2773 0.0010 0.0005 7 6 3.5917 -1.1977 0.0059 8 6 2.2023 -1.2020 -0.0005 9 7 1.5063 -2.4131 -0.0005 10 6 2.2413 -3.6803 -0.0017 11 6 1.2493 -4.8452 -0.0021 12 6 0.3701 -4.7667 1.2476 13 6 0.3691 -4.7651 -1.2509 14 6 2.0169 -6.1687 -0.0026 15 6 1.0399 -7.3160 -0.0024 16 1 -0.0223 -7.1208 -0.0023 17 6 1.5021 -8.6151 -0.0033 18 7 2.7956 -8.8529 -0.0039 19 14 0.2910 -10.0374 -0.0037 20 1 -1.0959 -9.5064 -0.0035 21 1 0.5027 -10.8673 -1.2168 22 1 0.5034 -10.8687 1.2082 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3634 -0.8898 -0.5142 26 1 4.1217 2.1328 0.0010 27 1 5.3573 0.0045 0.0013 28 1 4.1350 -2.1311 0.0103 29 1 0.5363 -2.4150 -0.0005 30 1 2.8687 -3.7373 0.8878 31 1 2.8674 -3.7364 -0.8921 32 1 -0.1767 -3.8238 1.2485 33 1 -0.3362 -5.5968 1.2476 34 1 0.9972 -4.8238 2.1373 35 1 0.9954 -4.8210 -2.1412 36 1 -0.3379 -5.5947 -1.2509 37 1 -0.1778 -3.8222 -1.2500 38 1 2.6437 -6.2249 -0.8926 39 1 2.6438 -6.2255 0.8873 40 1 3.1207 -9.7667 -0.0042 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092142162.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:10 Heat of formation + Delta-G solvation = -6.656869 kcal Electronic energy + Delta-G solvation = -19698.443835 eV Core-core repulsion = 16730.789943 eV Total energy + Delta-G solvation = -2967.653892 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.78798 -37.62961 -36.45365 -34.32340 -32.69844 -32.13101 -29.17027 -27.20342 -26.72423 -26.54835 -25.90421 -23.11897 -21.52125 -21.23989 -18.32317 -17.31781 -16.50695 -16.06750 -15.30611 -14.77255 -14.66243 -14.41295 -14.01586 -13.90216 -13.33377 -13.06900 -12.86338 -12.64779 -12.45744 -12.41101 -12.11308 -11.63003 -11.47029 -11.30568 -11.17062 -11.06197 -10.86771 -10.79584 -10.69468 -10.41563 -10.27206 -10.04727 -9.71331 -9.26087 -8.97241 -8.61569 -8.41000 -7.26619 -6.05244 -4.06234 1.25172 1.56317 2.11742 3.26931 3.35301 3.37687 3.67107 3.76899 4.41526 4.80099 4.94863 5.05831 5.30703 5.34484 5.44882 5.53615 5.56153 5.57796 5.60391 5.65275 5.73791 6.06345 6.11774 6.12350 6.18154 6.29613 6.32721 6.33131 6.50875 6.59087 6.59285 6.74379 6.99145 7.02405 7.05719 7.46080 7.57052 7.69304 7.87794 7.93484 8.35826 8.98606 9.57337 11.06287 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.039108 B = 0.003309 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.798114 B = 8460.165730 C = 8974.293240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.165 4.165 3 C 0.013 3.987 4 Cl -0.081 7.081 5 C -0.180 4.180 6 C -0.063 4.063 7 C -0.194 4.194 8 C 0.238 3.762 9 N -0.732 5.732 10 C 0.130 3.870 11 C -0.071 4.071 12 C -0.126 4.126 13 C -0.126 4.126 14 C 0.037 3.963 15 C -0.511 4.511 16 H 0.060 0.940 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.400 0.600 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.029 0.971 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.028 0.972 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.191 18.750 0.021 18.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.171 4.171 3 C -0.014 4.014 4 Cl -0.052 7.052 5 C -0.201 4.201 6 C -0.082 4.082 7 C -0.217 4.217 8 C 0.131 3.869 9 N -0.360 5.360 10 C 0.006 3.994 11 C -0.071 4.071 12 C -0.184 4.184 13 C -0.184 4.184 14 C -0.001 4.001 15 C -0.549 4.549 16 H 0.078 0.922 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.142 0.858 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.238 0.762 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.051 18.522 0.020 18.552 hybrid contribution -0.881 -0.801 -0.003 1.190 sum -1.931 17.722 0.016 17.827 Atomic orbital electron populations 1.20635 0.90819 1.02748 1.02278 1.19074 0.96188 0.90316 1.11528 1.20437 0.91989 0.85548 1.03393 1.98333 1.77351 1.32609 1.96876 1.20662 0.91631 0.98804 1.09041 1.20788 0.99541 0.91219 0.96673 1.20807 0.92212 0.99062 1.09584 1.17559 0.91287 0.85600 0.92448 1.45163 1.08645 1.02560 1.79676 1.21660 0.95071 0.81989 1.00667 1.20869 0.95346 0.95798 0.95119 1.21748 0.99644 0.99776 0.97209 1.21749 0.99631 0.99761 0.97226 1.19091 0.94985 0.88659 0.97350 1.21221 0.93015 0.90523 1.50175 0.92214 1.25010 0.94990 0.98980 0.95492 1.69966 1.12391 1.20112 1.50968 0.86593 0.81487 0.82700 0.77569 1.19784 1.21100 1.21094 0.91371 0.91055 0.91942 0.85802 0.85521 0.85328 0.76234 0.92373 0.92406 0.95242 0.91481 0.93395 0.93389 0.91474 0.95281 0.96409 0.96404 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.18 36.01 0.33 -0.86 16 2 C -0.17 -2.13 5.90 -104.39 -0.62 -2.74 16 3 C 0.01 0.17 6.31 -39.53 -0.25 -0.08 16 4 Cl -0.08 -0.89 27.29 -51.86 -1.42 -2.30 16 5 C -0.18 -2.08 9.83 -39.51 -0.39 -2.47 16 6 C -0.06 -0.72 10.04 -39.62 -0.40 -1.12 16 7 C -0.19 -2.53 9.31 -39.38 -0.37 -2.90 16 8 C 0.24 3.27 6.63 -83.79 -0.56 2.71 16 9 N -0.73 -10.24 5.03 -58.64 -0.30 -10.54 16 10 C 0.13 2.06 3.80 -4.04 -0.02 2.05 16 11 C -0.07 -1.30 0.54 -154.51 -0.08 -1.38 16 12 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 13 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 14 C 0.04 0.86 4.04 -27.89 -0.11 0.75 16 15 C -0.51 -13.31 7.65 -34.44 -0.26 -13.58 16 16 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 19 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.74 6.90 -51.93 -0.36 0.38 16 25 H 0.06 0.66 6.55 -51.93 -0.34 0.32 16 26 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 27 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 28 H 0.13 1.65 6.73 -52.49 -0.35 1.30 16 29 H 0.40 5.31 4.16 -40.82 -0.17 5.14 16 30 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 31 H 0.06 0.94 7.96 -51.93 -0.41 0.52 16 32 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 33 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 37 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 LS Contribution 329.26 15.07 4.96 4.96 Total: -1.00 -27.63 329.26 -9.09 -36.72 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.84 Total: 2.37 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -2.22 Total: -21.97 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.44 Total: -35.69 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.42 Total: -2.30 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.63 -9.09 -36.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092142162.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.066 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds