Wall clock time and date at job start Tue Mar 31 2020 05:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.40654 * 119.81574 * 226.26010 * 3 2 1 5 5 C 1.35732 * 120.86792 * 179.97438 * 4 3 2 6 6 C 1.40732 * 120.13173 * 359.97438 * 5 4 3 7 7 N 1.33715 * 120.71394 * 179.97438 * 6 5 4 8 8 C 1.31764 * 121.32349 * 180.02562 * 7 6 5 9 9 N 1.38557 * 119.22312 * 180.02562 * 8 7 6 10 10 C 1.46498 * 119.99790 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47065 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47603 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47426 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00053 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99747 * 180.02562 * 13 12 11 16 16 N 1.31507 * 120.00449 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99767 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47253 * 59.99753 * 17 15 13 19 19 H 1.48500 * 109.47399 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47180 * 300.00261 * 17 15 13 21 21 C 1.40275 * 121.55481 * 0.02562 * 8 7 6 22 22 C 1.36181 * 119.84990 * 359.97438 * 21 8 7 23 23 C 1.41152 * 118.29886 * 0.02562 * 22 21 8 24 24 C 1.38709 * 119.82725 * 46.23939 * 3 2 1 25 25 H 1.08004 * 119.56986 * 359.97438 * 4 3 2 26 26 H 1.07996 * 119.93417 * 180.02562 * 5 4 3 27 27 H 0.96991 * 119.99819 * 359.97438 * 9 8 7 28 28 H 1.09005 * 109.47215 * 299.99804 * 10 9 8 29 29 H 1.09000 * 109.47479 * 60.00205 * 10 9 8 30 30 H 1.08996 * 109.47602 * 299.99970 * 11 10 9 31 31 H 1.09005 * 109.47423 * 59.99781 * 11 10 9 32 32 H 1.09005 * 109.47164 * 300.00189 * 12 11 10 33 33 H 1.08999 * 109.46520 * 60.00017 * 12 11 10 34 34 H 0.97003 * 120.00111 * 179.97438 * 16 15 13 35 35 H 1.08007 * 120.07409 * 179.72982 * 21 8 7 36 36 H 1.08002 * 120.84887 * 179.97438 * 22 21 8 37 37 H 1.08001 * 120.28265 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2670 0.8447 0.8817 5 6 4.6241 0.8622 0.9001 6 6 5.3531 0.0293 0.0310 7 7 6.6902 0.0375 0.0389 8 6 7.3848 -0.7369 -0.7699 9 7 8.7690 -0.6937 -0.7246 10 6 9.5579 -1.5478 -1.6158 11 6 11.0480 -1.3072 -1.3655 12 6 11.8721 -2.1996 -2.2958 13 6 13.3398 -1.9622 -2.0497 14 1 13.6535 -1.2467 -1.3040 15 6 14.2821 -2.6584 -2.7765 16 7 13.9003 -3.5293 -3.6848 17 14 16.1014 -2.3646 -2.4708 18 1 16.4251 -2.6903 -1.0586 19 1 16.9013 -3.2298 -3.3747 20 1 16.4242 -0.9397 -2.7366 21 6 6.7560 -1.6040 -1.6757 22 6 5.3963 -1.6572 -1.7305 23 6 4.6585 -0.8250 -0.8614 24 6 3.2583 -0.8313 -0.8691 25 1 2.7167 1.4874 1.5529 26 1 5.1454 1.5159 1.5835 27 1 9.2155 -0.0980 -0.1029 28 1 9.3206 -2.5937 -1.4209 29 1 9.3208 -1.3085 -2.6525 30 1 11.2851 -0.2614 -1.5607 31 1 11.2856 -1.5462 -0.3289 32 1 11.6351 -3.2454 -2.1002 33 1 11.6347 -1.9610 -3.3325 34 1 14.5633 -4.0189 -4.1964 35 1 7.3488 -2.2252 -2.3308 36 1 4.8954 -2.3185 -2.4220 37 1 2.7204 -1.4795 -1.5451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092895217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:36 Heat of formation + Delta-G solvation = 69.734230 kcal Electronic energy + Delta-G solvation = -19336.971032 eV Core-core repulsion = 16271.522213 eV Total energy + Delta-G solvation = -3065.448819 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.98647 -38.42039 -36.76566 -35.54394 -33.77420 -33.48831 -31.61954 -30.41620 -29.66636 -26.72625 -24.34481 -24.14622 -22.70585 -22.39061 -20.53959 -19.70887 -17.99516 -17.47422 -16.48498 -16.26491 -15.37006 -15.29180 -14.70114 -14.55220 -14.54053 -14.43579 -13.86927 -13.85229 -13.51391 -13.28289 -13.00975 -12.50459 -12.42584 -12.09445 -11.93706 -11.71938 -11.60256 -10.95384 -10.85645 -10.78996 -10.67716 -10.05234 -9.64260 -9.63410 -9.54658 -9.25072 -8.70744 -8.45659 -7.67900 -6.10847 -4.13972 0.11507 0.56332 1.77224 2.30853 2.42840 3.09668 3.24418 3.27046 3.32074 3.34344 3.63851 4.00153 4.29394 4.37387 4.38809 4.57700 4.72414 4.76910 5.01308 5.06805 5.25461 5.36842 5.48863 5.50020 5.58137 5.72680 5.77850 5.88471 5.99118 6.04733 6.12860 6.40602 6.42143 6.53806 6.82476 6.95917 7.24879 7.50676 7.52445 7.61996 7.86784 8.06954 8.28185 8.92039 9.50937 11.00303 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.061208 B = 0.002306 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.344683 B =12139.803976 C =12571.400440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.262 3.738 3 C -0.070 4.070 4 C -0.052 4.052 5 C -0.114 4.114 6 C 0.214 3.786 7 N -0.566 5.566 8 C 0.445 3.555 9 N -0.703 5.703 10 C 0.116 3.884 11 C -0.122 4.122 12 C 0.025 3.975 13 C -0.525 4.525 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.212 4.212 22 C -0.016 4.016 23 C -0.168 4.168 24 C -0.006 4.006 25 H 0.133 0.867 26 H 0.140 0.860 27 H 0.408 0.592 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.262 0.738 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.468 5.307 5.538 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.052 4.052 3 C -0.075 4.075 4 C -0.074 4.074 5 C -0.133 4.133 6 C 0.088 3.912 7 N -0.287 5.287 8 C 0.195 3.805 9 N -0.332 5.332 10 C -0.007 4.007 11 C -0.160 4.160 12 C -0.012 4.012 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.235 4.235 22 C -0.041 4.041 23 C -0.172 4.172 24 C -0.028 4.028 25 H 0.151 0.849 26 H 0.158 0.842 27 H 0.244 0.756 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.613 5.591 5.835 21.213 hybrid contribution 1.332 -0.256 -0.269 1.383 sum -18.281 5.335 5.565 19.840 Atomic orbital electron populations 1.81255 1.12140 1.08725 1.08611 1.25720 0.92611 0.93449 0.93468 1.15784 0.84142 1.04169 1.03369 1.20659 0.93889 0.96420 0.96415 1.20544 0.92739 1.00135 0.99910 1.18633 0.88432 0.92044 0.92069 1.67628 1.06682 1.27178 1.27252 1.18709 0.86060 0.87788 0.87912 1.45075 1.01419 1.44744 1.41966 1.21867 0.92559 0.93485 0.92778 1.21890 0.90530 1.01753 1.01791 1.19025 0.93913 0.94286 0.94006 1.21149 0.91142 1.23222 1.20789 0.92636 1.25015 0.99206 0.95081 0.95080 1.69936 1.34115 1.25727 1.23519 0.86631 0.84867 0.78198 0.78154 1.20197 1.21235 1.20202 1.21497 0.95696 1.03408 1.02925 1.21302 0.93377 0.94577 0.94830 1.18492 0.93724 1.02863 1.02161 1.21229 0.92501 0.94419 0.94628 0.84917 0.84193 0.75615 0.91618 0.91628 0.92408 0.92415 0.96256 0.96257 0.92812 0.83916 0.83941 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.17 18.54 41.84 0.78 -4.39 16 2 C 0.26 2.54 15.30 -22.47 -0.34 2.19 16 3 C -0.07 -0.58 5.73 -106.88 -0.61 -1.19 16 4 C -0.05 -0.40 9.64 -39.57 -0.38 -0.78 16 5 C -0.11 -1.03 9.94 -39.54 -0.39 -1.43 16 6 C 0.21 2.42 6.61 -84.77 -0.56 1.86 16 7 N -0.57 -7.40 10.35 -10.16 -0.11 -7.51 16 8 C 0.44 5.66 7.63 -155.56 -1.19 4.47 16 9 N -0.70 -9.04 5.71 -60.38 -0.34 -9.39 16 10 C 0.12 1.63 4.86 -4.04 -0.02 1.61 16 11 C -0.12 -2.14 5.27 -26.73 -0.14 -2.28 16 12 C 0.03 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -13.97 9.11 -34.44 -0.31 -14.29 16 14 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 16 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 17 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.21 -2.27 9.22 -39.56 -0.36 -2.64 16 22 C -0.02 -0.14 9.88 -39.22 -0.39 -0.53 16 23 C -0.17 -1.62 5.74 -106.79 -0.61 -2.24 16 24 C -0.01 -0.05 9.49 -38.74 -0.37 -0.41 16 25 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 26 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 27 H 0.41 5.06 8.59 -40.82 -0.35 4.71 16 28 H 0.07 0.90 7.90 -51.93 -0.41 0.49 16 29 H 0.07 0.89 7.89 -51.93 -0.41 0.48 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.14 1.38 6.62 -52.48 -0.35 1.03 16 36 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 329.44 15.07 4.96 4.96 Total: -1.00 -30.37 329.44 -9.36 -39.73 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -4.44 Total: -0.60 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -5.92 Total: -13.70 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 1.06 Total: -46.18 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.37 -9.36 -39.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092895217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.461 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds