Wall clock time and date at job start Tue Mar 31 2020 05:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38217 * 119.99476 * 2 1 4 4 C 1.38351 * 119.98862 * 180.27554 * 3 2 1 5 5 Cl 1.73604 * 120.01530 * 179.75023 * 4 3 2 6 6 C 1.38357 * 119.97082 * 359.72468 * 4 3 2 7 7 C 1.38212 * 119.98607 * 0.02562 * 6 4 3 8 8 C 1.50703 * 119.99062 * 180.02562 * 7 6 4 9 9 C 1.38241 * 119.99284 * 179.72834 * 2 1 3 10 10 C 1.50695 * 119.98888 * 0.02562 * 9 2 1 11 11 N 1.46905 * 109.47035 * 269.72914 * 10 9 2 12 12 C 1.46897 * 111.00323 * 66.04137 * 11 10 9 13 13 C 1.46899 * 111.00195 * 189.99794 * 11 10 9 14 14 H 1.08999 * 109.46920 * 300.00061 * 13 11 10 15 15 C 1.53000 * 109.46838 * 59.99624 * 13 11 10 16 16 C 1.50700 * 109.47229 * 179.97438 * 13 11 10 17 17 H 1.08000 * 119.99636 * 354.31965 * 16 13 11 18 18 C 1.37870 * 119.99763 * 174.31106 * 16 13 11 19 19 N 1.31522 * 119.99987 * 155.04666 * 18 16 13 20 20 Si 1.86799 * 120.00598 * 335.32558 * 18 16 13 21 21 H 1.48500 * 109.47345 * 179.72193 * 20 18 16 22 22 H 1.48503 * 109.46993 * 299.72408 * 20 18 16 23 23 H 1.48503 * 109.46862 * 59.72007 * 20 18 16 24 24 H 1.08998 * 109.47245 * 270.27480 * 1 2 3 25 25 H 1.09004 * 109.47149 * 30.27309 * 1 2 3 26 26 H 1.08999 * 109.47050 * 150.27029 * 1 2 3 27 27 H 1.08008 * 120.00473 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.00622 * 179.97438 * 6 4 3 29 29 H 1.09006 * 109.46933 * 269.97799 * 8 7 6 30 30 H 1.08989 * 109.47362 * 29.97769 * 8 7 6 31 31 H 1.09000 * 109.46883 * 149.98117 * 8 7 6 32 32 H 1.08987 * 109.47533 * 149.72639 * 10 9 2 33 33 H 1.09000 * 109.46957 * 29.71972 * 10 9 2 34 34 H 1.08993 * 109.47437 * 183.95643 * 12 11 10 35 35 H 1.09002 * 109.47169 * 303.96116 * 12 11 10 36 36 H 1.09000 * 109.47008 * 63.95527 * 12 11 10 37 37 H 1.09001 * 109.47132 * 51.97563 * 15 13 11 38 38 H 1.09002 * 109.46962 * 171.97414 * 15 13 11 39 39 H 1.08998 * 109.47417 * 291.97217 * 15 13 11 40 40 H 0.97001 * 119.99203 * 355.22559 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1971 0.0000 4 6 3.5815 1.1969 -0.0058 5 17 4.4500 2.7000 -0.0123 6 6 4.2725 -0.0017 -0.0058 7 6 3.5805 -1.1981 -0.0005 8 6 4.3331 -2.5037 0.0000 9 6 2.1981 -1.1973 0.0057 10 6 1.4442 -2.5021 0.0113 11 7 1.2043 -2.9231 1.3981 12 6 0.2966 -1.9920 2.0815 13 6 0.6859 -4.2966 1.4492 14 1 -0.2541 -4.3507 0.9000 15 6 1.7021 -5.2491 0.8160 16 6 0.4532 -4.6926 2.8845 17 1 0.7540 -4.0305 3.6829 18 6 -0.1438 -5.9002 3.1782 19 7 0.0773 -6.4780 4.3389 20 14 -1.2605 -6.7196 1.9249 21 1 -1.7679 -8.0013 2.4770 22 1 -2.4053 -5.8236 1.6214 23 1 -0.4961 -6.9850 0.6797 24 1 -0.3633 0.0049 1.0276 25 1 -0.3633 0.8875 -0.5181 26 1 -0.3633 -0.8924 -0.5096 27 1 1.6579 2.1324 0.0004 28 1 5.3525 -0.0025 -0.0107 29 1 4.5107 -2.8211 -1.0275 30 1 5.2874 -2.3728 0.5099 31 1 3.7454 -3.2616 0.5180 32 1 2.0310 -3.2630 -0.5031 33 1 0.4898 -2.3725 -0.4992 34 1 0.1916 -2.2873 3.1254 35 1 0.7044 -0.9825 2.0287 36 1 -0.6797 -2.0152 1.5974 37 1 2.6798 -5.0924 1.2716 38 1 1.3857 -6.2792 0.9800 39 1 1.7646 -5.0544 -0.2546 40 1 0.7135 -6.0904 4.9601 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:40 Heat of formation + Delta-G solvation = 16.365795 kcal Electronic energy + Delta-G solvation = -20436.988930 eV Core-core repulsion = 17470.333376 eV Total energy + Delta-G solvation = -2966.655554 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.04355 -37.22099 -36.34997 -33.73694 -33.11215 -31.67446 -29.72166 -28.29666 -26.77853 -26.13356 -24.26027 -23.48329 -20.78465 -20.59127 -19.19864 -17.50289 -16.37863 -16.28771 -15.26744 -14.95943 -14.59606 -13.81144 -13.57294 -13.50369 -13.05195 -13.00732 -12.84540 -12.81994 -12.53365 -12.27825 -12.12776 -11.83132 -11.60366 -11.32326 -11.21641 -11.06640 -10.82998 -10.78195 -10.69533 -10.33142 -10.31787 -10.06508 -9.83744 -8.93721 -8.59170 -8.40140 -8.22285 -7.34954 -6.48964 -4.04293 1.22286 1.32876 2.11456 3.36432 3.40764 3.57964 3.60993 4.48170 4.73087 4.80600 4.88846 5.06382 5.16031 5.19114 5.29435 5.39645 5.56789 5.62059 5.71904 5.78848 5.85895 5.91182 5.98305 6.05721 6.18475 6.22510 6.25156 6.35566 6.39909 6.46742 6.55484 6.62017 6.78510 6.83502 6.91498 6.93503 7.30053 7.72950 7.98617 8.31945 8.42502 8.97728 9.59715 10.89138 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030536 B = 0.004328 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.724668 B = 6467.987184 C = 6750.372357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.065 4.065 3 C -0.121 4.121 4 C -0.032 4.032 5 Cl -0.084 7.084 6 C -0.121 4.121 7 C -0.048 4.048 8 C -0.122 4.122 9 C -0.059 4.059 10 C 0.076 3.924 11 N -0.518 5.518 12 C 0.033 3.967 13 C 0.191 3.809 14 H -0.011 1.011 15 C -0.141 4.141 16 C -0.598 4.598 17 H 0.065 0.935 18 C 0.039 3.961 19 N -0.897 5.897 20 Si 1.033 2.967 21 H -0.285 1.285 22 H -0.286 1.286 23 H -0.279 1.279 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.014 0.986 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.020 0.980 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.234 13.352 -11.253 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.066 4.066 3 C -0.140 4.140 4 C -0.059 4.059 5 Cl -0.055 7.055 6 C -0.140 4.140 7 C -0.049 4.049 8 C -0.179 4.179 9 C -0.060 4.060 10 C -0.051 4.051 11 N -0.242 5.242 12 C -0.115 4.115 13 C 0.084 3.916 14 H 0.006 0.994 15 C -0.199 4.199 16 C -0.635 4.635 17 H 0.083 0.917 18 C -0.168 4.168 19 N -0.529 5.529 20 Si 0.861 3.139 21 H -0.211 1.211 22 H -0.213 1.213 23 H -0.205 1.205 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.039 0.961 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.755 12.149 -11.213 17.203 hybrid contribution 0.372 1.590 -0.148 1.640 sum 5.127 13.740 -11.361 18.551 Atomic orbital electron populations 1.21171 0.90838 1.02727 1.03361 1.19692 0.96201 0.91835 0.98833 1.20781 0.91807 0.98316 1.03080 1.20772 0.92272 0.86545 1.06290 1.98345 1.76981 1.33063 1.97121 1.20856 1.00005 0.90293 1.02838 1.19689 0.93053 0.94886 0.97251 1.20936 1.00060 0.94734 1.02153 1.19777 0.93101 0.94886 0.98222 1.21239 0.97889 0.93069 0.92918 1.62088 1.47589 1.03703 1.10867 1.22494 0.93091 0.95106 1.00846 1.19584 0.90872 0.83487 0.97707 0.99367 1.22201 1.01058 1.00229 0.96402 1.21867 1.45095 1.05928 0.90648 0.91682 1.25591 0.97535 0.94073 0.99593 1.70846 1.34055 1.37962 1.10078 0.84185 0.77133 0.76585 0.75984 1.21055 1.21253 1.20507 0.89860 0.91884 0.90841 0.85451 0.85373 0.91412 0.91695 0.89003 0.89703 0.94525 0.90600 0.92934 0.96744 0.92836 0.92810 0.96125 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 8.14 36.01 0.29 -1.22 16 2 C -0.06 -0.89 4.88 -104.63 -0.51 -1.40 16 3 C -0.12 -1.56 9.49 -39.55 -0.38 -1.93 16 4 C -0.03 -0.42 6.32 -39.50 -0.25 -0.67 16 5 Cl -0.08 -0.97 28.96 -51.86 -1.50 -2.47 16 6 C -0.12 -1.59 9.49 -39.55 -0.38 -1.97 16 7 C -0.05 -0.68 5.88 -104.63 -0.62 -1.30 16 8 C -0.12 -1.60 9.19 36.01 0.33 -1.27 16 9 C -0.06 -0.89 4.88 -104.62 -0.51 -1.40 16 10 C 0.08 1.27 3.91 -4.98 -0.02 1.25 16 11 N -0.52 -10.35 4.57 -237.74 -1.09 -11.44 16 12 C 0.03 0.62 7.45 60.06 0.45 1.07 16 13 C 0.19 4.36 1.66 -68.87 -0.11 4.25 16 14 H -0.01 -0.26 6.70 -51.93 -0.35 -0.61 16 15 C -0.14 -2.98 8.37 37.16 0.31 -2.67 16 16 C -0.60 -16.12 7.98 -34.44 -0.27 -16.39 16 17 H 0.07 1.92 6.88 -52.49 -0.36 1.56 16 18 C 0.04 1.08 5.15 -17.82 -0.09 0.99 16 19 N -0.90 -26.77 13.70 55.43 0.76 -26.01 16 20 Si 1.03 24.48 26.49 -169.99 -4.50 19.97 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.14 6.29 56.52 0.36 -5.79 16 24 H 0.08 1.03 5.80 -51.93 -0.30 0.73 16 25 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 26 H 0.07 0.92 5.94 -51.93 -0.31 0.61 16 27 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 28 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.76 8.08 -51.94 -0.42 0.34 16 31 H 0.09 1.41 6.01 -51.93 -0.31 1.10 16 32 H 0.08 1.37 4.56 -51.94 -0.24 1.13 16 33 H 0.04 0.59 5.91 -51.93 -0.31 0.28 16 34 H 0.08 1.63 6.34 -51.93 -0.33 1.30 16 35 H 0.05 0.89 4.78 -51.93 -0.25 0.65 16 36 H 0.01 0.26 7.55 -51.93 -0.39 -0.13 16 37 H 0.05 1.12 7.59 -51.93 -0.39 0.73 16 38 H 0.05 1.20 5.67 -51.93 -0.29 0.91 16 39 H 0.02 0.37 6.64 -51.93 -0.34 0.02 16 40 H 0.27 8.08 8.73 -40.82 -0.36 7.72 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -28.48 316.55 -8.80 -37.28 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.48 Total: 0.57 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -1.75 Total: -22.67 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: -0.33 Total: -37.45 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -4.50 Total: 19.97 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.48 -8.80 -37.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.646 kcal (2) G-P(sol) polarization free energy of solvation -28.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds