Wall clock time and date at job start Tue Mar 31 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38218 * 119.98852 * 2 1 4 4 C 1.38357 * 119.98334 * 180.27406 * 3 2 1 5 5 Cl 1.73599 * 120.01361 * 179.74973 * 4 3 2 6 6 C 1.38350 * 119.97199 * 359.72734 * 4 3 2 7 7 C 1.38216 * 119.98995 * 0.02562 * 6 4 3 8 8 C 1.50699 * 119.99642 * 180.02562 * 7 6 4 9 9 C 1.38235 * 120.01114 * 359.97438 * 7 6 4 10 10 C 1.50700 * 119.98905 * 180.02562 * 9 7 6 11 11 N 1.46901 * 109.47017 * 90.00253 * 10 9 7 12 12 C 1.46895 * 111.00231 * 66.05067 * 11 10 9 13 13 C 1.46903 * 110.99984 * 190.00287 * 11 10 9 14 14 H 1.09007 * 109.47052 * 54.99665 * 13 11 10 15 15 C 1.53000 * 109.47096 * 295.00215 * 13 11 10 16 16 C 1.50694 * 109.47066 * 174.99980 * 13 11 10 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 11 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 H 1.09006 * 109.46954 * 270.26615 * 1 2 3 25 25 H 1.08994 * 109.47777 * 30.26922 * 1 2 3 26 26 H 1.08997 * 109.46924 * 150.27436 * 1 2 3 27 27 H 1.07999 * 120.01205 * 0.02562 * 3 2 1 28 28 H 1.08007 * 120.00811 * 180.02562 * 6 4 3 29 29 H 1.08999 * 109.46759 * 269.97721 * 8 7 6 30 30 H 1.09005 * 109.46575 * 29.97418 * 8 7 6 31 31 H 1.08997 * 109.47106 * 149.96974 * 8 7 6 32 32 H 1.09007 * 109.47097 * 330.00382 * 10 9 7 33 33 H 1.09000 * 109.47410 * 210.00692 * 10 9 7 34 34 H 1.08998 * 109.47176 * 183.95703 * 12 11 10 35 35 H 1.09001 * 109.46775 * 303.95460 * 12 11 10 36 36 H 1.09003 * 109.47375 * 63.94911 * 12 11 10 37 37 H 1.09002 * 109.47106 * 299.99893 * 15 13 11 38 38 H 1.08998 * 109.47089 * 59.99840 * 15 13 11 39 39 H 1.08995 * 109.47131 * 180.02562 * 15 13 11 40 40 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1971 0.0000 4 6 3.5814 1.1970 -0.0057 5 17 4.4499 2.7002 -0.0123 6 6 4.2725 -0.0015 -0.0058 7 6 3.5805 -1.1980 -0.0006 8 6 4.3331 -2.5036 0.0000 9 6 2.1982 -1.1972 0.0051 10 6 1.4442 -2.5020 0.0113 11 7 1.2049 -2.9227 1.3984 12 6 0.2974 -1.9915 2.0818 13 6 0.6865 -4.2962 1.4499 14 1 1.3683 -4.9620 0.9206 15 6 -0.6918 -4.3463 0.7877 16 6 0.5698 -4.7354 2.8867 17 1 0.8528 -4.0619 3.6821 18 6 0.1026 -5.9978 3.1859 19 7 -0.2415 -6.8182 2.2174 20 14 -0.0413 -6.5424 4.9669 21 1 -0.5655 -7.9309 5.0191 22 1 1.2966 -6.4935 5.6093 23 1 -0.9702 -5.6358 5.6883 24 1 -0.3633 0.0048 1.0277 25 1 -0.3634 0.8875 -0.5180 26 1 -0.3633 -0.8924 -0.5096 27 1 1.6579 2.1324 0.0004 28 1 5.3525 -0.0023 -0.0098 29 1 4.5107 -2.8209 -1.0276 30 1 5.2876 -2.3725 0.5099 31 1 3.7455 -3.2614 0.5180 32 1 2.0310 -3.2632 -0.5031 33 1 0.4898 -2.3727 -0.4989 34 1 0.1928 -2.2866 3.1258 35 1 0.7051 -0.9820 2.0286 36 1 -0.6791 -2.0149 1.5979 37 1 -1.3736 -3.6805 1.3169 38 1 -0.6074 -4.0286 -0.2515 39 1 -1.0767 -5.3653 0.8264 40 1 -0.5698 -7.7064 2.4280 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:43 Heat of formation + Delta-G solvation = 16.893867 kcal Electronic energy + Delta-G solvation = -20379.658139 eV Core-core repulsion = 17413.025483 eV Total energy + Delta-G solvation = -2966.632655 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.96552 -37.20167 -36.32239 -33.61609 -33.10282 -31.57335 -28.66105 -28.03281 -26.74173 -25.94682 -25.10593 -23.62622 -20.72396 -20.68835 -19.05561 -16.49411 -16.19574 -16.03759 -15.43985 -14.76684 -14.52190 -13.73843 -13.53974 -13.42938 -13.05842 -12.93974 -12.77105 -12.67267 -12.40891 -12.33977 -11.99344 -11.46323 -11.26841 -11.15214 -11.12623 -10.89386 -10.82494 -10.72521 -10.62149 -10.56448 -10.37209 -10.01130 -9.79947 -8.92566 -8.52427 -8.40366 -8.31401 -7.14521 -6.02873 -4.06552 1.29779 1.39759 2.16931 3.31550 3.35956 3.39059 3.68477 4.40793 4.80882 4.88815 5.03834 5.20757 5.24849 5.29497 5.39172 5.47580 5.65914 5.70757 5.80334 5.87756 5.95864 6.02314 6.08727 6.17509 6.29464 6.33626 6.38360 6.44975 6.56437 6.64953 6.78664 6.88081 6.88122 7.00524 7.08709 7.44830 7.69434 7.80940 8.08431 8.35400 8.56559 8.99189 9.58619 11.04102 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027725 B = 0.004148 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.661399 B = 6749.225082 C = 6937.138457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.065 4.065 3 C -0.122 4.122 4 C -0.033 4.033 5 Cl -0.086 7.086 6 C -0.122 4.122 7 C -0.049 4.049 8 C -0.120 4.120 9 C -0.058 4.058 10 C 0.083 3.917 11 N -0.524 5.524 12 C 0.027 3.973 13 C 0.211 3.789 14 H 0.039 0.961 15 C -0.173 4.173 16 C -0.499 4.499 17 H 0.062 0.938 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.288 1.288 22 H -0.277 1.277 23 H -0.278 1.278 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.020 0.980 37 H 0.030 0.970 38 H 0.007 0.993 39 H 0.088 0.912 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.039 13.561 -6.368 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.066 4.066 3 C -0.141 4.141 4 C -0.060 4.060 5 Cl -0.057 7.057 6 C -0.140 4.140 7 C -0.049 4.049 8 C -0.177 4.177 9 C -0.058 4.058 10 C -0.045 4.045 11 N -0.248 5.248 12 C -0.121 4.121 13 C 0.105 3.895 14 H 0.057 0.943 15 C -0.232 4.232 16 C -0.538 4.538 17 H 0.080 0.920 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.214 1.214 22 H -0.202 1.202 23 H -0.204 1.204 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.049 0.951 38 H 0.026 0.974 39 H 0.107 0.893 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.493 13.485 -6.139 15.802 hybrid contribution -0.796 -0.128 0.534 0.967 sum 4.697 13.357 -5.605 15.228 Atomic orbital electron populations 1.21163 0.90861 1.02712 1.03309 1.19688 0.96188 0.91825 0.98863 1.20774 0.91793 0.98302 1.03188 1.20760 0.92256 0.86467 1.06511 1.98341 1.77024 1.33175 1.97147 1.20850 0.99959 0.90312 1.02917 1.19705 0.93108 0.94869 0.97257 1.20898 0.99964 0.94675 1.02138 1.19846 0.93092 0.95069 0.97825 1.21104 0.97694 0.92589 0.93070 1.62413 1.47173 1.04480 1.10714 1.22529 0.93933 0.95233 1.00404 1.19330 0.90662 0.82781 0.96726 0.94301 1.22410 1.01419 1.03923 0.95458 1.21066 1.42364 0.98853 0.91518 0.92007 1.24912 0.95492 0.96549 0.97231 1.69872 1.44629 1.07640 1.31261 0.86597 0.78427 0.77489 0.85097 1.21420 1.20236 1.20408 0.89917 0.92015 0.90749 0.85540 0.85442 0.91439 0.91770 0.88990 0.90432 0.94113 0.91156 0.93264 0.96138 0.95052 0.97440 0.89338 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 8.14 36.01 0.29 -1.26 16 2 C -0.06 -0.91 4.88 -104.63 -0.51 -1.42 16 3 C -0.12 -1.60 9.49 -39.54 -0.38 -1.97 16 4 C -0.03 -0.44 6.32 -39.50 -0.25 -0.69 16 5 Cl -0.09 -1.01 28.96 -51.86 -1.50 -2.51 16 6 C -0.12 -1.63 9.49 -39.55 -0.38 -2.01 16 7 C -0.05 -0.71 5.88 -104.63 -0.62 -1.32 16 8 C -0.12 -1.62 9.19 36.01 0.33 -1.29 16 9 C -0.06 -0.89 4.88 -104.62 -0.51 -1.40 16 10 C 0.08 1.43 3.53 -4.98 -0.02 1.41 16 11 N -0.52 -10.62 4.69 -237.73 -1.12 -11.74 16 12 C 0.03 0.52 7.10 60.06 0.43 0.94 16 13 C 0.21 5.05 2.34 -68.87 -0.16 4.89 16 14 H 0.04 1.02 8.03 -51.92 -0.42 0.60 16 15 C -0.17 -3.99 8.28 37.16 0.31 -3.69 16 16 C -0.50 -13.21 7.94 -34.44 -0.27 -13.49 16 17 H 0.06 1.65 6.75 -52.49 -0.35 1.30 16 18 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 19 N -0.89 -24.84 11.32 55.43 0.63 -24.21 16 20 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H 0.08 1.05 5.79 -51.93 -0.30 0.75 16 25 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 26 H 0.07 0.98 5.94 -51.93 -0.31 0.68 16 27 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 28 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 31 H 0.09 1.46 6.66 -51.93 -0.35 1.12 16 32 H 0.08 1.34 6.56 -51.93 -0.34 1.00 16 33 H 0.04 0.70 4.73 -51.93 -0.25 0.45 16 34 H 0.07 1.45 6.53 -51.93 -0.34 1.11 16 35 H 0.05 0.84 4.78 -51.93 -0.25 0.59 16 36 H 0.02 0.38 5.69 -51.93 -0.30 0.08 16 37 H 0.03 0.70 6.39 -51.93 -0.33 0.37 16 38 H 0.01 0.14 6.75 -51.93 -0.35 -0.21 16 39 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 318.01 15.07 4.79 4.79 Total: -1.00 -27.05 318.01 -9.48 -36.53 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.44 Total: 0.97 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -1.83 Total: -19.81 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.49 Total: -35.95 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.05 -9.48 -36.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.427 kcal (2) G-P(sol) polarization free energy of solvation -27.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds