Wall clock time and date at job start Tue Mar 31 2020 05:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36227 * 117.00306 * 2 1 4 4 C 1.38674 * 122.58763 * 0.20145 * 3 2 1 5 5 C 1.33425 * 114.88458 * 180.31040 * 4 3 2 6 6 S 1.75863 * 109.66299 * 359.73423 * 5 4 3 7 7 C 1.33630 * 122.58917 * 179.97438 * 3 2 1 8 8 C 1.50694 * 125.19264 * 359.97438 * 7 3 2 9 9 N 1.46494 * 109.47440 * 89.71703 * 8 7 3 10 10 C 1.36935 * 120.00522 * 89.99778 * 9 8 7 11 11 H 1.07998 * 120.00253 * 217.07826 * 10 9 8 12 12 C 1.38813 * 120.00020 * 37.35133 * 10 9 8 13 13 N 1.31620 * 120.00036 * 21.05118 * 12 10 9 14 14 Si 1.86800 * 120.00248 * 201.05812 * 12 10 9 15 15 H 1.48501 * 109.47210 * 59.99973 * 14 12 10 16 16 H 1.48507 * 109.47015 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47157 * 299.99752 * 14 12 10 18 18 C 1.46499 * 119.99977 * 269.99750 * 9 8 7 19 19 C 1.54269 * 110.03524 * 241.02741 * 18 9 8 20 20 C 1.54965 * 104.15990 * 217.13705 * 19 18 9 21 21 C 1.54889 * 102.77958 * 37.88629 * 20 19 18 22 22 C 1.53874 * 110.03461 * 123.80876 * 18 9 8 23 23 H 1.09005 * 109.47011 * 59.99461 * 1 2 3 24 24 H 1.08999 * 109.47385 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47202 * 299.99814 * 1 2 3 26 26 H 1.08005 * 122.55528 * 0.04791 * 4 3 2 27 27 H 1.08012 * 125.16855 * 179.77205 * 5 4 3 28 28 H 1.09003 * 109.47416 * 329.71284 * 8 7 3 29 29 H 1.09010 * 109.46907 * 209.71573 * 8 7 3 30 30 H 0.97002 * 120.00361 * 174.92910 * 13 12 10 31 31 H 1.09004 * 110.01927 * 2.41376 * 18 9 8 32 32 H 1.08998 * 110.48305 * 335.77995 * 19 18 9 33 33 H 1.09000 * 110.48754 * 98.42583 * 19 18 9 34 34 H 1.08998 * 110.71750 * 279.56995 * 20 19 18 35 35 H 1.09000 * 110.92488 * 156.29414 * 20 19 18 36 36 H 1.09003 * 110.48479 * 203.40752 * 21 20 19 37 37 H 1.08992 * 110.59875 * 80.81785 * 21 20 19 38 38 H 1.09005 * 110.02967 * 238.57445 * 22 18 9 39 39 H 1.08997 * 110.03304 * 359.95262 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3456 2.4097 0.0041 5 6 2.1052 3.5066 -0.0031 6 16 3.8036 3.0502 -0.0081 7 6 3.3774 1.3438 0.0005 8 6 4.3617 0.2027 0.0017 9 7 4.6761 -0.1725 -1.3791 10 6 5.7210 0.4267 -2.0305 11 1 5.6414 0.6556 -3.0829 12 6 6.8848 0.7347 -1.3394 13 7 7.1671 0.1114 -0.2150 14 14 8.0503 2.0340 -2.0049 15 1 7.3381 3.3332 -2.1052 16 1 9.2099 2.1752 -1.0880 17 1 8.5292 1.6269 -3.3503 18 6 3.8727 -1.1887 -2.0630 19 6 4.7613 -2.3853 -2.4610 20 6 4.2057 -2.8288 -3.8380 21 6 3.8555 -1.4810 -4.5163 22 6 3.2966 -0.6142 -3.3691 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2663 2.4502 0.0083 27 1 1.7335 4.5207 -0.0049 28 1 3.9268 -0.6517 0.5203 29 1 5.2747 0.5109 0.5113 30 1 8.0140 0.2727 0.2296 31 1 3.0638 -1.5241 -1.4139 32 1 5.8019 -2.0740 -2.5520 33 1 4.6653 -3.1906 -1.7327 34 1 3.3133 -3.4423 -3.7143 35 1 4.9640 -3.3635 -4.4099 36 1 3.0991 -1.6272 -5.2874 37 1 4.7483 -1.0222 -4.9410 38 1 2.2081 -0.6713 -3.3540 39 1 3.6141 0.4210 -3.4936 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093563176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:02 Heat of formation + Delta-G solvation = 11.446056 kcal Electronic energy + Delta-G solvation = -21001.370489 eV Core-core repulsion = 18036.545305 eV Total energy + Delta-G solvation = -2964.825184 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.16840 -37.57811 -35.28243 -34.20530 -31.26108 -29.63478 -27.76004 -27.09822 -26.24025 -25.00760 -23.12302 -21.56309 -19.82232 -19.10267 -18.80496 -17.03896 -16.19881 -15.65153 -15.32122 -15.18244 -14.61840 -14.48760 -14.11313 -13.40702 -13.23490 -12.94537 -12.50597 -12.32687 -12.17348 -12.06483 -11.30078 -11.01316 -10.91700 -10.79933 -10.51604 -10.50439 -10.37898 -10.27812 -10.18725 -10.12511 -9.99428 -9.79215 -9.70165 -9.39459 -8.45372 -7.89658 -7.25018 -6.48957 -5.79580 -3.29204 1.68637 2.35132 2.69082 3.35002 3.40102 3.43895 3.47674 4.20633 4.50058 5.25153 5.31669 5.42006 5.45824 5.47627 5.54678 5.55590 5.60480 5.70638 5.85638 6.23717 6.24285 6.34199 6.36930 6.45841 6.52751 6.61818 6.66647 6.70404 6.74792 6.82079 6.95887 7.06510 7.08911 7.32567 7.46731 7.65664 7.89772 7.94535 8.57408 9.22055 9.85499 10.45011 11.23261 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012531 B = 0.009680 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.874181 B = 2891.864595 C = 4422.752677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.302 6.302 3 C 0.055 3.945 4 C -0.181 4.181 5 C -0.237 4.237 6 S 0.136 5.864 7 C -0.179 4.179 8 C 0.211 3.789 9 N -0.563 5.563 10 C -0.244 4.244 11 H 0.061 0.939 12 C 0.015 3.985 13 N -0.887 5.887 14 Si 0.887 3.113 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.281 1.281 18 C 0.175 3.825 19 C -0.130 4.130 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.130 4.130 23 H 0.044 0.956 24 H 0.089 0.911 25 H 0.043 0.957 26 H 0.128 0.872 27 H 0.153 0.847 28 H 0.047 0.953 29 H 0.105 0.895 30 H 0.257 0.743 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.735 1.048 -0.494 10.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.217 6.217 3 C 0.001 3.999 4 C -0.214 4.214 5 C -0.374 4.374 6 S 0.399 5.601 7 C -0.300 4.300 8 C 0.083 3.917 9 N -0.280 5.280 10 C -0.375 4.375 11 H 0.078 0.922 12 C -0.185 4.185 13 N -0.529 5.529 14 Si 0.716 3.284 15 H -0.205 1.205 16 H -0.216 1.216 17 H -0.208 1.208 18 C 0.068 3.932 19 C -0.169 4.169 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.169 4.169 23 H 0.063 0.937 24 H 0.108 0.892 25 H 0.062 0.938 26 H 0.146 0.854 27 H 0.171 0.829 28 H 0.065 0.935 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.136 1.708 -0.344 9.301 hybrid contribution -1.122 0.241 -0.469 1.240 sum -10.258 1.949 -0.812 10.473 Atomic orbital electron populations 1.22839 0.80329 1.02721 1.00208 1.86162 1.19324 1.25583 1.90649 1.17546 0.91182 0.84377 1.06776 1.20048 1.00321 0.92072 1.08997 1.25273 0.98208 1.01694 1.12191 1.84441 1.03967 0.99671 1.72069 1.25425 0.96358 0.99072 1.09161 1.19513 0.95092 0.89269 0.87839 1.43910 1.31875 1.40885 1.11351 1.18887 0.91589 1.32477 0.94510 0.92175 1.25143 0.96605 0.99157 0.97635 1.69867 1.22676 1.41285 1.19090 0.86599 0.80447 0.82942 0.78396 1.20461 1.21581 1.20751 1.21037 0.92070 0.88132 0.92004 1.22811 1.02410 0.97618 0.94076 1.22436 0.99369 0.96539 0.97749 1.22251 0.99815 0.96190 0.97249 1.22524 0.97927 1.00379 0.96075 0.93742 0.89206 0.93815 0.85381 0.82886 0.93486 0.87799 0.93297 0.92643 0.89771 0.93686 0.92958 0.92967 0.93618 0.92072 0.94048 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 9.92 101.05 1.00 1.46 16 2 O -0.30 -5.49 9.85 -20.47 -0.20 -5.69 16 3 C 0.06 1.06 6.59 -41.04 -0.27 0.79 16 4 C -0.18 -3.00 9.16 -41.10 -0.38 -3.38 16 5 C -0.24 -3.87 11.22 29.05 0.33 -3.54 16 6 S 0.14 2.64 23.32 -107.50 -2.51 0.13 16 7 C -0.18 -3.81 6.10 -35.93 -0.22 -4.03 16 8 C 0.21 5.01 5.59 -5.20 -0.03 4.98 16 9 N -0.56 -13.55 2.37 -165.75 -0.39 -13.95 16 10 C -0.24 -6.34 7.74 -15.06 -0.12 -6.46 16 11 H 0.06 1.60 7.02 -52.49 -0.37 1.23 16 12 C 0.01 0.40 4.97 -17.43 -0.09 0.31 16 13 N -0.89 -24.52 11.43 55.49 0.63 -23.88 16 14 Si 0.89 21.20 29.61 -169.99 -5.03 16.16 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C 0.17 3.74 3.41 -66.81 -0.23 3.52 16 19 C -0.13 -2.66 6.42 -25.03 -0.16 -2.82 16 20 C -0.12 -2.10 6.91 -24.70 -0.17 -2.27 16 21 C -0.12 -2.05 6.83 -25.07 -0.17 -2.22 16 22 C -0.13 -2.55 6.15 -25.61 -0.16 -2.71 16 23 H 0.04 0.53 7.85 -51.93 -0.41 0.12 16 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.50 7.84 -51.93 -0.41 0.09 16 26 H 0.13 1.76 6.91 -52.48 -0.36 1.39 16 27 H 0.15 2.01 8.06 -52.48 -0.42 1.59 16 28 H 0.05 1.12 7.78 -51.93 -0.40 0.71 16 29 H 0.10 2.74 5.49 -51.92 -0.28 2.46 16 30 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 31 H 0.06 1.20 7.53 -51.93 -0.39 0.80 16 32 H 0.08 1.99 7.16 -51.93 -0.37 1.62 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.51 6.80 -51.93 -0.35 1.15 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -27.78 326.66 -9.10 -36.89 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.87 Total: 1.77 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -0.66 Total: -16.36 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.24 Total: -37.83 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.20 Total: -5.69 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.51 Total: 0.13 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.78 -9.10 -36.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093563176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.332 kcal (2) G-P(sol) polarization free energy of solvation -27.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds