Wall clock time and date at job start Tue Mar 31 2020 05:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21251 * 120.00251 * 2 1 4 4 C 1.47192 * 119.99995 * 179.97438 * 2 1 3 5 5 C 1.39904 * 120.12992 * 0.02562 * 4 2 1 6 6 C 1.37933 * 119.98551 * 179.97438 * 5 4 2 7 7 C 1.38271 * 120.25835 * 0.02562 * 6 5 4 8 8 C 1.39081 * 120.27346 * 359.97438 * 7 6 5 9 9 N 1.39635 * 119.99704 * 179.97438 * 8 7 6 10 10 C 1.38816 * 119.99995 * 328.25197 * 9 8 7 11 11 C 1.39603 * 119.84226 * 334.45132 * 10 9 8 12 12 C 1.36316 * 120.15346 * 179.75611 * 11 10 9 13 13 C 1.40898 * 119.83817 * 0.54238 * 12 11 10 14 14 C 1.41108 * 120.14929 * 179.69225 * 13 12 11 15 15 H 1.08003 * 119.99972 * 207.74610 * 14 13 12 16 16 C 1.39850 * 120.00221 * 27.75580 * 14 13 12 17 17 N 1.30917 * 119.99822 * 12.24884 * 16 14 13 18 18 Si 1.86794 * 120.00119 * 192.24486 * 16 14 13 19 19 H 1.48502 * 109.47161 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46981 * 119.99992 * 18 16 14 21 21 H 1.48497 * 109.47345 * 239.99731 * 18 16 14 22 22 C 1.40896 * 119.69821 * 359.71524 * 13 12 11 23 23 C 1.36314 * 119.83893 * 0.02562 * 22 13 12 24 24 C 1.38671 * 120.00980 * 0.27054 * 8 7 6 25 25 H 1.08996 * 109.47293 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47309 * 300.00725 * 1 2 3 27 27 H 1.09003 * 109.46318 * 60.00606 * 1 2 3 28 28 H 1.07997 * 120.01380 * 0.02562 * 5 4 2 29 29 H 1.07996 * 119.87158 * 179.97438 * 6 5 4 30 30 H 1.08004 * 119.86798 * 179.97438 * 7 6 5 31 31 H 0.97001 * 119.99793 * 148.52728 * 9 8 7 32 32 H 1.07995 * 119.92421 * 0.02562 * 11 10 9 33 33 H 1.08005 * 120.07681 * 180.27866 * 12 11 10 34 34 H 0.96993 * 119.99405 * 180.02562 * 17 16 14 35 35 H 1.08004 * 120.08540 * 179.97438 * 22 13 12 36 36 H 1.08001 * 119.92389 * 179.97438 * 23 22 13 37 37 H 1.08001 * 120.13488 * 179.70945 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2430 -1.2747 0.0006 5 6 1.5462 -2.4879 0.0006 6 6 2.2389 -3.6807 0.0006 7 6 3.6216 -3.6834 0.0011 8 6 4.3251 -2.4837 0.0011 9 7 5.7214 -2.4932 0.0022 10 6 6.4080 -3.5199 0.6357 11 6 5.8037 -4.2167 1.6837 12 6 6.4702 -5.2293 2.3070 13 6 7.7764 -5.5645 1.8988 14 6 8.4749 -6.6072 2.5438 15 1 9.5542 -6.5931 2.5792 16 6 7.7695 -7.6591 3.1370 17 7 6.4919 -7.8095 2.8943 18 14 8.6503 -8.8495 4.2755 19 1 10.0802 -8.4638 4.3847 20 1 8.0221 -8.8049 5.6203 21 1 8.5488 -10.2258 3.7272 22 6 8.3822 -4.8534 0.8440 23 6 7.7020 -3.8466 0.2261 24 6 3.6401 -1.2780 0.0062 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 0.4662 -2.4906 -0.0003 29 1 1.6991 -4.6161 0.0010 30 1 4.1576 -4.6211 0.0015 31 1 6.2116 -1.7802 -0.4363 32 1 4.8041 -3.9557 1.9984 33 1 5.9997 -5.7705 3.1146 34 1 6.0026 -8.5388 3.3060 35 1 9.3834 -5.1049 0.5263 36 1 8.1652 -3.3004 -0.5823 37 1 4.1844 -0.3452 0.0110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098170000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:57 Heat of formation + Delta-G solvation = 11.043929 kcal Electronic energy + Delta-G solvation = -20283.245378 eV Core-core repulsion = 17182.958806 eV Total energy + Delta-G solvation = -3100.286573 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.02049 -38.80821 -37.44840 -35.12961 -33.21841 -31.49471 -30.55261 -29.68374 -29.14538 -27.85556 -24.86625 -23.44655 -22.27919 -21.01389 -20.69188 -19.25832 -17.39737 -17.23617 -16.57138 -15.79090 -15.36757 -15.08923 -15.00359 -14.98260 -14.04052 -13.96362 -13.53823 -13.22095 -12.93563 -12.60996 -12.46436 -12.25737 -12.06219 -11.85619 -11.74625 -11.40893 -11.16534 -11.08725 -10.93872 -10.63726 -10.14338 -9.82946 -9.74696 -9.46459 -9.19630 -8.76859 -8.01711 -7.65639 -6.78122 -6.57827 -4.28855 0.81289 1.62068 2.48682 2.76616 2.95472 3.06415 3.11353 3.16572 3.85383 3.92367 4.05304 4.20460 4.61842 4.91448 4.95697 5.13287 5.25329 5.43480 5.52772 5.60929 5.64454 5.76322 5.92694 6.06432 6.10956 6.18720 6.43278 6.59952 6.63373 6.77254 6.82969 6.99722 7.07682 7.18204 7.40574 7.50809 7.51609 7.68298 7.97304 8.09971 8.27502 8.39270 8.58229 8.85693 8.92425 10.19402 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030611 B = 0.003509 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.494860 B = 7977.267973 C = 8555.043701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.397 3.603 3 O -0.467 6.467 4 C -0.145 4.145 5 C -0.130 4.130 6 C -0.099 4.099 7 C -0.132 4.132 8 C 0.195 3.805 9 N -0.677 5.677 10 C 0.034 3.966 11 C -0.132 4.132 12 C -0.134 4.134 13 C 0.093 3.907 14 C -0.459 4.459 15 H 0.077 0.923 16 C 0.072 3.928 17 N -0.802 5.802 18 Si 0.909 3.091 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.275 1.275 22 C -0.200 4.200 23 C -0.124 4.124 24 C -0.129 4.129 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.397 0.603 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.279 0.721 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.993 6.682 -4.170 12.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.277 3.723 3 O -0.344 6.344 4 C -0.146 4.146 5 C -0.150 4.150 6 C -0.118 4.118 7 C -0.154 4.154 8 C 0.093 3.907 9 N -0.298 5.298 10 C -0.060 4.060 11 C -0.153 4.153 12 C -0.154 4.154 13 C 0.091 3.909 14 C -0.489 4.489 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.429 5.429 18 Si 0.734 3.266 19 H -0.185 1.185 20 H -0.198 1.198 21 H -0.200 1.200 22 C -0.220 4.220 23 C -0.145 4.145 24 C -0.152 4.152 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.154 0.846 31 H 0.231 0.769 32 H 0.112 0.888 33 H 0.141 0.859 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.825 6.940 -4.039 12.689 hybrid contribution 0.504 -0.511 0.313 0.783 sum -9.322 6.429 -3.725 11.921 Atomic orbital electron populations 1.22233 0.94112 1.04905 1.04571 1.22544 0.91531 0.87790 0.70482 1.90512 1.72210 1.34579 1.37054 1.20130 0.93742 0.94408 1.06367 1.21190 0.99382 0.91460 1.02924 1.20914 0.93690 0.97865 0.99334 1.21427 0.94250 0.98140 1.01573 1.17707 0.84338 0.92957 0.95657 1.41647 1.01617 1.27109 1.59400 1.17237 0.93714 0.96282 0.98751 1.20361 0.99273 0.99109 0.96542 1.21014 0.96408 0.96804 1.01141 1.17632 0.92059 0.91376 0.89876 1.19521 0.94666 1.04349 1.30389 0.90523 1.25875 0.94841 0.98349 0.95345 1.69825 1.08771 1.28554 1.35717 0.86239 0.80648 0.79645 0.80043 1.18525 1.19800 1.20036 1.20617 1.00316 1.01108 0.99952 1.20000 0.94404 0.99620 1.00477 1.20996 0.93228 0.97097 1.03861 0.89575 0.89006 0.89050 0.85607 0.85634 0.84627 0.76864 0.88766 0.85882 0.91033 0.88614 0.89168 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.63 10.19 36.01 0.37 -1.26 16 2 C 0.40 5.04 7.23 -30.67 -0.22 4.82 16 3 O -0.47 -7.45 17.09 5.58 0.10 -7.36 16 4 C -0.14 -1.99 5.87 -105.09 -0.62 -2.61 16 5 C -0.13 -1.56 9.45 -39.07 -0.37 -1.93 16 6 C -0.10 -1.34 10.02 -39.68 -0.40 -1.73 16 7 C -0.13 -2.17 7.71 -39.26 -0.30 -2.48 16 8 C 0.20 3.29 5.89 -83.83 -0.49 2.79 16 9 N -0.68 -11.97 5.42 -8.34 -0.05 -12.02 16 10 C 0.03 0.72 6.06 -83.68 -0.51 0.21 16 11 C -0.13 -2.98 7.77 -39.76 -0.31 -3.29 16 12 C -0.13 -3.35 8.61 -39.27 -0.34 -3.69 16 13 C 0.09 2.40 5.56 -106.80 -0.59 1.81 16 14 C -0.46 -11.86 9.04 -37.89 -0.34 -12.20 16 15 H 0.08 1.91 7.87 -52.48 -0.41 1.50 16 16 C 0.07 1.77 5.23 -17.34 -0.09 1.68 16 17 N -0.80 -20.20 10.84 55.54 0.60 -19.59 16 18 Si 0.91 18.38 29.58 -169.99 -5.03 13.35 16 19 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 22 C -0.20 -4.70 9.74 -39.27 -0.38 -5.08 16 23 C -0.12 -2.65 9.87 -39.76 -0.39 -3.04 16 24 C -0.13 -2.01 9.51 -38.87 -0.37 -2.38 16 25 H 0.09 0.54 5.60 -51.93 -0.29 0.25 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.13 1.08 5.92 -52.49 -0.31 0.77 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.14 2.50 6.55 -52.48 -0.34 2.16 16 31 H 0.40 6.12 8.88 -40.82 -0.36 5.76 16 32 H 0.09 2.02 6.29 -52.49 -0.33 1.69 16 33 H 0.12 3.21 6.18 -52.48 -0.32 2.88 16 34 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 35 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 36 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.13 1.95 7.65 -52.49 -0.40 1.55 16 LS Contribution 315.68 15.07 4.76 4.76 Total: -1.00 -28.19 315.68 -9.00 -37.19 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -4.03 Total: 12.05 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -5.36 Total: -28.38 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.56 Total: -31.61 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.10 Total: -7.36 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.19 -9.00 -37.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098170000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.236 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds