Wall clock time and date at job start Tue Mar 31 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99985 * 2 1 4 4 C 1.52997 * 109.47401 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47377 * 64.99497 * 4 3 2 6 6 C 1.46505 * 119.99899 * 90.00269 * 5 4 3 7 7 C 1.50703 * 109.47064 * 270.00279 * 6 5 4 8 8 H 1.07996 * 119.99751 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00001 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99923 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 120.00006 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47093 * 90.00088 * 11 9 7 13 13 H 1.48500 * 109.47049 * 210.00797 * 11 9 7 14 14 H 1.48504 * 109.47189 * 330.00185 * 11 9 7 15 15 C 1.37913 * 120.00461 * 270.00259 * 5 4 3 16 16 N 1.32681 * 119.02932 * 359.73241 * 15 5 4 17 17 C 1.31946 * 120.89935 * 179.71368 * 16 15 5 18 18 C 1.40177 * 119.00310 * 0.54257 * 17 16 15 19 19 C 1.47419 * 120.86996 * 179.71121 * 18 17 16 20 20 O 1.21511 * 119.99719 * 180.02562 * 19 18 17 21 21 O 1.34748 * 120.00019 * 0.02562 * 19 18 17 22 22 C 1.40161 * 118.25247 * 359.73214 * 18 17 16 23 23 N 1.31947 * 119.00913 * 359.97438 * 22 18 17 24 24 H 1.09000 * 109.46916 * 60.00482 * 1 2 3 25 25 H 1.09003 * 109.46828 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46939 * 300.00070 * 1 2 3 27 27 H 1.09004 * 109.47531 * 59.99515 * 3 2 1 28 28 H 1.08999 * 109.47120 * 300.00062 * 3 2 1 29 29 H 1.09006 * 109.46817 * 304.99787 * 4 3 2 30 30 H 1.08996 * 109.47652 * 185.00037 * 4 3 2 31 31 H 1.09002 * 109.47068 * 30.00248 * 6 5 4 32 32 H 1.09001 * 109.47372 * 150.00336 * 6 5 4 33 33 H 0.97000 * 119.99684 * 180.02562 * 10 9 7 34 34 H 1.08001 * 120.49730 * 180.25272 * 17 16 15 35 35 H 0.96702 * 116.99890 * 180.02562 * 21 19 18 36 36 H 1.08006 * 120.49573 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.2864 1.4006 -2.4148 7 6 3.0416 1.5936 -3.2420 8 1 2.1121 1.1386 -2.9331 9 6 3.0895 2.3503 -4.3935 10 7 2.0031 2.5191 -5.1151 11 14 4.6974 3.1368 -4.9280 12 1 5.4381 2.1991 -5.8097 13 1 4.4123 4.3920 -5.6686 14 1 5.5200 3.4446 -3.7306 15 6 4.0977 -0.8067 -1.3374 16 7 3.8165 -1.5452 -0.2716 17 6 3.9152 -2.8603 -0.3133 18 6 4.3349 -3.4730 -1.5021 19 6 4.4656 -4.9386 -1.5925 20 8 4.8312 -5.4531 -2.6309 21 8 4.1798 -5.7077 -0.5236 22 6 4.6273 -2.6556 -2.6025 23 7 4.4975 -1.3482 -2.4808 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8514 0.5682 0.8410 30 1 3.9785 2.1765 0.0889 31 1 4.6523 2.3703 -2.0772 32 1 5.0520 0.9135 -3.0187 33 1 2.0370 3.0512 -5.9255 34 1 3.6808 -3.4554 0.5570 35 1 4.2808 -6.6635 -0.6309 36 1 4.9540 -3.0894 -3.5361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126477385.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:17 Heat of formation + Delta-G solvation = -65.837122 kcal Electronic energy + Delta-G solvation = -22294.410282 eV Core-core repulsion = 18779.940634 eV Total energy + Delta-G solvation = -3514.469648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.72081 -39.52856 -37.68650 -36.08521 -35.88367 -33.34141 -32.65262 -31.33819 -29.75395 -27.60863 -25.98449 -24.44326 -24.16126 -22.27134 -21.95106 -20.52845 -18.17712 -17.46008 -17.01198 -16.76908 -16.75214 -15.94541 -15.54298 -15.28296 -14.88038 -14.49582 -14.26453 -13.95405 -13.65155 -13.46654 -13.02023 -12.48076 -12.38776 -12.16564 -11.78210 -11.48700 -11.45803 -11.27870 -10.92425 -10.80194 -10.61639 -10.42721 -10.29312 -10.18535 -9.75406 -9.44025 -9.13606 -8.67493 -8.53346 -7.32068 -6.15187 -4.14638 0.99914 1.69078 2.84321 3.12927 3.23608 3.28350 3.30993 3.37062 4.22569 4.32878 4.40669 4.58790 4.93713 5.02141 5.17568 5.22744 5.48442 5.58273 5.60713 5.67476 5.73505 5.80341 5.90665 6.00324 6.05343 6.30999 6.51138 6.55062 6.58727 6.84092 7.30802 7.41101 7.49619 7.65227 7.97422 8.05033 8.39887 8.77370 8.90267 9.43789 10.97700 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015001 B = 0.006107 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.117709 B = 4583.813741 C = 5689.359255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.370 6.370 3 C 0.042 3.958 4 C 0.132 3.868 5 N -0.537 5.537 6 C 0.219 3.781 7 C -0.526 4.526 8 H 0.077 0.923 9 C 0.075 3.925 10 N -0.895 5.895 11 Si 0.874 3.126 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.267 1.267 15 C 0.601 3.399 16 N -0.562 5.562 17 C 0.252 3.748 18 C -0.339 4.339 19 C 0.549 3.451 20 O -0.531 6.531 21 O -0.518 6.518 22 C 0.261 3.739 23 N -0.553 5.553 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.265 0.735 34 H 0.170 0.830 35 H 0.409 0.591 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.674 -7.987 12.233 14.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.288 6.288 3 C -0.036 4.036 4 C 0.009 3.991 5 N -0.244 5.244 6 C 0.099 3.901 7 C -0.565 4.565 8 H 0.095 0.905 9 C -0.128 4.128 10 N -0.533 5.533 11 Si 0.701 3.299 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.191 1.191 15 C 0.247 3.753 16 N -0.284 5.284 17 C 0.078 3.922 18 C -0.350 4.350 19 C 0.394 3.606 20 O -0.422 6.422 21 O -0.330 6.330 22 C 0.088 3.912 23 N -0.274 5.274 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.187 0.813 35 H 0.267 0.733 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.662 -6.326 11.911 13.747 hybrid contribution 0.422 -0.882 -0.694 1.199 sum 3.083 -7.208 11.217 13.685 Atomic orbital electron populations 1.22628 0.82355 1.01822 0.99433 1.88004 1.18349 1.27213 1.95273 1.23053 0.94256 0.85494 1.00810 1.21514 0.92822 0.98491 0.86321 1.46556 1.63393 1.00517 1.13883 1.19926 0.98134 0.88990 0.83070 1.21269 0.95524 1.32159 1.07508 0.90515 1.24825 0.96190 0.95878 0.95864 1.69886 1.27785 1.39958 1.15696 0.86890 0.84289 0.79229 0.79469 1.19778 1.21137 1.19144 1.19454 0.84231 0.87303 0.84300 1.68058 1.23667 1.06433 1.30220 1.23152 0.84084 0.89604 0.95336 1.20217 1.23519 0.90805 1.00478 1.20378 0.72528 0.87442 0.80220 1.90864 1.45429 1.75169 1.30720 1.84560 1.82183 1.24392 1.41835 1.23109 0.84385 0.87262 0.96470 1.68249 1.22190 1.12285 1.24661 0.94171 0.90542 0.94956 0.93600 0.91060 0.89291 0.89148 0.94852 0.93547 0.92506 0.81328 0.73314 0.81194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.64 16 2 O -0.37 -6.73 9.38 -35.23 -0.33 -7.06 16 3 C 0.04 0.70 6.28 37.16 0.23 0.94 16 4 C 0.13 2.19 5.89 -4.05 -0.02 2.16 16 5 N -0.54 -10.93 2.52 -177.46 -0.45 -11.38 16 6 C 0.22 5.01 4.26 -5.19 -0.02 4.99 16 7 C -0.53 -14.18 9.37 -34.44 -0.32 -14.50 16 8 H 0.08 2.33 7.48 -52.49 -0.39 1.93 16 9 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 10 N -0.90 -26.58 13.96 55.43 0.77 -25.80 16 11 Si 0.87 20.56 27.47 -169.99 -4.67 15.89 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 14 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 15 C 0.60 12.23 7.80 -323.04 -2.52 9.71 16 16 N -0.56 -10.08 8.15 -13.64 -0.11 -10.19 16 17 C 0.25 3.82 10.89 -16.77 -0.18 3.64 16 18 C -0.34 -5.30 5.90 -104.71 -0.62 -5.92 16 19 C 0.55 7.71 8.28 34.47 0.29 7.99 16 20 O -0.53 -8.78 17.22 -19.27 -0.33 -9.11 16 21 O -0.52 -5.26 12.77 -40.62 -0.52 -5.77 16 22 C 0.26 4.62 10.87 -16.78 -0.18 4.44 16 23 N -0.55 -11.55 9.06 -13.64 -0.12 -11.68 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 29 H 0.09 1.37 7.31 -51.93 -0.38 0.99 16 30 H 0.09 1.28 7.89 -51.93 -0.41 0.87 16 31 H 0.03 0.72 6.95 -51.93 -0.36 0.36 16 32 H 0.05 1.11 6.74 -51.93 -0.35 0.76 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 34 H 0.17 2.00 7.70 -52.49 -0.40 1.59 16 35 H 0.41 2.23 9.11 45.56 0.42 2.64 16 36 H 0.17 2.71 7.74 -52.48 -0.41 2.31 16 LS Contribution 316.08 15.07 4.76 4.76 Total: -1.00 -33.63 316.08 -6.84 -40.47 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -3.51 Total: 2.79 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: -2.34 Total: 17.07 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.09 Total: -59.05 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -1.18 Total: -21.94 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.67 Total: 15.89 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.63 -6.84 -40.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126477385.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.365 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds