Wall clock time and date at job start Tue Mar 31 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47047 * 2 1 4 4 C 1.52996 * 109.47454 * 239.99173 * 2 1 3 5 5 C 1.50706 * 109.46771 * 60.00260 * 4 2 1 6 6 H 1.07999 * 119.99820 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99731 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99877 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99986 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47023 * 59.99464 * 9 7 5 11 11 H 1.48491 * 109.47437 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47092 * 300.00053 * 9 7 5 13 13 C 1.53006 * 109.46957 * 119.99416 * 2 1 3 14 14 N 1.46902 * 109.47058 * 300.00094 * 13 2 1 15 15 C 1.46896 * 111.00036 * 180.02562 * 14 13 2 16 16 C 1.50702 * 109.47203 * 180.02562 * 15 14 13 17 17 C 1.38270 * 119.99101 * 270.27514 * 16 15 14 18 18 C 1.38215 * 120.02537 * 180.27948 * 17 16 15 19 19 C 1.38238 * 120.01126 * 359.44038 * 18 17 16 20 20 C 1.38325 * 119.98878 * 0.28199 * 19 18 17 21 21 Cl 1.73606 * 120.01335 * 179.97438 * 20 19 18 22 22 C 1.38193 * 119.99765 * 89.99917 * 16 15 14 23 23 H 1.08997 * 109.47144 * 300.00360 * 1 2 3 24 24 H 1.08997 * 109.46798 * 60.00960 * 1 2 3 25 25 H 1.09003 * 109.46962 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47008 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.46621 * 299.99353 * 3 2 1 28 28 H 1.08997 * 109.47705 * 59.99339 * 3 2 1 29 29 H 1.09002 * 109.47151 * 179.97438 * 4 2 1 30 30 H 1.09003 * 109.47266 * 300.00095 * 4 2 1 31 31 H 0.97004 * 119.99314 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46911 * 180.02562 * 13 2 1 33 33 H 1.08994 * 109.47503 * 60.00237 * 13 2 1 34 34 H 1.00901 * 111.00004 * 303.95503 * 14 13 2 35 35 H 1.08998 * 109.47506 * 59.99841 * 15 14 13 36 36 H 1.09000 * 109.47057 * 299.99741 * 15 14 13 37 37 H 1.07997 * 119.98420 * 0.02562 * 17 16 15 38 38 H 1.08002 * 119.99636 * 179.72646 * 18 17 16 39 39 H 1.07999 * 120.00577 * 180.25936 * 19 18 17 40 40 H 1.08003 * 120.00423 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5378 -0.0111 -2.4797 6 1 0.9166 0.8668 -2.3806 7 6 1.8705 -0.4826 -3.7319 8 7 2.6266 -1.5519 -3.8523 9 14 1.2474 0.3974 -5.2572 10 1 1.7422 1.7975 -5.2578 11 1 1.7425 -0.3026 -6.4696 12 1 -0.2377 0.3974 -5.2567 13 6 2.0400 -0.7212 1.2494 14 7 1.5503 -0.0285 2.4487 15 6 2.0217 -0.6941 3.6704 16 6 1.5000 0.0426 4.8772 17 6 2.2354 1.0763 5.4271 18 6 1.7604 1.7487 6.5373 19 6 0.5442 1.3955 7.0916 20 6 -0.1946 0.3652 6.5384 21 17 -1.7217 -0.0792 7.2343 22 6 0.2842 -0.3114 5.4304 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9565 0.8899 29 1 3.1301 -0.7210 -1.2493 30 1 1.6768 -1.7491 -1.2490 31 1 2.8610 -1.8833 -4.7334 32 1 3.1300 -0.7208 1.2496 33 1 1.6767 -1.7488 1.2495 34 1 1.8197 0.9438 2.4401 35 1 3.1116 -0.6936 3.6871 36 1 1.6586 -1.7217 3.6876 37 1 3.1833 1.3558 4.9914 38 1 2.3372 2.5532 6.9692 39 1 0.1711 1.9237 7.9566 40 1 -0.2920 -1.1162 4.9983 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135122813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:54 Heat of formation + Delta-G solvation = -5.262887 kcal Electronic energy + Delta-G solvation = -19236.013303 eV Core-core repulsion = 16268.419859 eV Total energy + Delta-G solvation = -2967.593444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.64970 -37.63487 -36.65643 -34.61913 -32.38794 -31.08710 -30.78497 -27.11429 -26.34859 -26.17127 -24.29896 -22.88494 -22.22702 -21.35245 -18.01658 -17.10665 -16.25483 -15.98215 -15.71057 -15.09145 -14.76827 -14.31544 -14.02249 -13.93564 -13.51830 -13.13476 -12.94062 -12.58846 -12.29551 -11.99328 -11.83665 -11.61132 -11.54384 -11.50886 -10.99568 -10.93232 -10.86940 -10.78517 -10.48768 -10.26749 -10.13849 -9.68718 -9.18768 -9.01223 -8.90150 -8.82197 -8.31158 -8.13615 -5.95936 -3.96084 0.93961 1.06288 1.93487 3.35090 3.38897 3.39743 3.42146 4.40906 4.50067 4.56819 4.72013 4.85545 5.05900 5.07916 5.26611 5.39835 5.48910 5.60527 5.70873 5.74266 5.76981 5.97640 6.01352 6.09416 6.22719 6.30126 6.35016 6.49811 6.58044 6.66528 6.78263 6.83276 7.18454 7.20577 7.26476 7.36099 7.61665 7.70357 7.85405 8.04249 8.48612 9.09066 9.66700 11.15720 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032171 B = 0.002936 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.147643 B = 9536.066071 C = 9814.431033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.508 4.508 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.069 3.931 14 N -0.681 5.681 15 C 0.094 3.906 16 C -0.062 4.062 17 C -0.111 4.111 18 C -0.109 4.109 19 C -0.116 4.116 20 C -0.035 4.035 21 Cl -0.075 7.075 22 C -0.088 4.088 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.012 0.988 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.340 0.660 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 4.559 22.216 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.003 4.003 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.059 4.059 14 N -0.313 5.313 15 C -0.035 4.035 16 C -0.063 4.063 17 C -0.130 4.130 18 C -0.127 4.127 19 C -0.135 4.135 20 C -0.062 4.062 21 Cl -0.046 7.046 22 C -0.107 4.107 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.159 0.841 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.735 4.063 22.128 22.663 hybrid contribution 0.535 0.614 -0.873 1.194 sum -2.199 4.677 21.255 21.874 Atomic orbital electron populations 1.21601 0.94953 1.00600 1.00200 1.20637 0.95911 0.95000 0.94335 1.21771 0.99661 0.96762 1.00446 1.19117 0.95866 0.95196 0.90135 1.21205 1.30810 1.11959 0.90625 0.92340 1.25013 0.95400 0.95113 0.99046 1.69958 1.37256 1.23178 1.23403 0.86724 0.79230 0.79761 0.82679 1.20362 1.21447 1.20288 1.22150 0.96408 0.98204 0.89135 1.60633 1.63606 1.06475 1.00574 1.20913 0.97055 0.98039 0.87504 1.19859 0.93972 0.96157 0.96285 1.21206 1.00207 0.95448 0.96113 1.21066 0.95482 0.99891 0.96240 1.21025 0.94973 0.96725 1.00759 1.20936 0.89001 0.98973 0.97257 1.98370 1.30029 1.92326 1.83915 1.20972 0.95643 1.00094 0.94038 0.93878 0.92694 0.94161 0.94106 0.91692 0.94826 0.96927 0.96668 0.93108 0.95722 0.91409 0.84091 0.94301 0.90061 0.85581 0.85198 0.85216 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 2 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 3 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.84 7.65 -34.44 -0.26 -14.10 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.07 1.16 4.65 -3.82 -0.02 1.14 16 14 N -0.68 -9.50 5.70 -115.06 -0.66 -10.16 16 15 C 0.09 1.09 5.81 -4.98 -0.03 1.06 16 16 C -0.06 -0.67 5.39 -104.63 -0.56 -1.23 16 17 C -0.11 -1.05 9.70 -39.58 -0.38 -1.44 16 18 C -0.11 -0.92 10.05 -39.59 -0.40 -1.32 16 19 C -0.12 -1.06 9.83 -39.55 -0.39 -1.45 16 20 C -0.04 -0.37 6.32 -39.50 -0.25 -0.62 16 21 Cl -0.08 -0.76 28.96 -51.86 -1.50 -2.26 16 22 C -0.09 -0.97 9.49 -39.55 -0.38 -1.35 16 23 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 24 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 28 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.34 4.62 6.76 -39.29 -0.27 4.35 16 35 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 36 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 339.16 15.07 5.11 5.11 Total: -1.00 -29.08 339.16 -9.90 -38.98 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.19 Total: 0.21 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -2.38 Total: -22.36 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.08 Total: -36.23 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.08 -9.90 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135122813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.716 kcal (2) G-P(sol) polarization free energy of solvation -29.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds