Wall clock time and date at job start Tue Mar 31 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47047 * 2 1 4 4 C 1.52996 * 109.47454 * 239.99173 * 2 1 3 5 5 C 1.50706 * 109.46771 * 60.00260 * 4 2 1 6 6 H 1.07999 * 119.99820 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99731 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99877 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99986 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47023 * 59.99464 * 9 7 5 11 11 H 1.48491 * 109.47437 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47092 * 300.00053 * 9 7 5 13 13 C 1.53006 * 109.46957 * 119.99416 * 2 1 3 14 14 N 1.46902 * 109.47058 * 300.00094 * 13 2 1 15 15 C 1.46896 * 111.00036 * 180.02562 * 14 13 2 16 16 C 1.50702 * 109.47203 * 180.02562 * 15 14 13 17 17 C 1.38270 * 119.99101 * 270.27514 * 16 15 14 18 18 C 1.38215 * 120.02537 * 180.27948 * 17 16 15 19 19 C 1.38238 * 120.01126 * 359.44038 * 18 17 16 20 20 C 1.38325 * 119.98878 * 0.28199 * 19 18 17 21 21 Cl 1.73606 * 120.01335 * 179.97438 * 20 19 18 22 22 C 1.38193 * 119.99765 * 89.99917 * 16 15 14 23 23 H 1.08997 * 109.47144 * 300.00360 * 1 2 3 24 24 H 1.08997 * 109.46798 * 60.00960 * 1 2 3 25 25 H 1.09003 * 109.46962 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47008 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.46621 * 299.99353 * 3 2 1 28 28 H 1.08997 * 109.47705 * 59.99339 * 3 2 1 29 29 H 1.09002 * 109.47151 * 179.97438 * 4 2 1 30 30 H 1.09003 * 109.47266 * 300.00095 * 4 2 1 31 31 H 0.97004 * 119.99314 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46911 * 180.02562 * 13 2 1 33 33 H 1.08994 * 109.47503 * 60.00237 * 13 2 1 34 34 H 1.00901 * 111.00004 * 303.95503 * 14 13 2 35 35 H 1.08998 * 109.47506 * 59.99841 * 15 14 13 36 36 H 1.09000 * 109.47057 * 299.99741 * 15 14 13 37 37 H 1.07997 * 119.98420 * 0.02562 * 17 16 15 38 38 H 1.08002 * 119.99636 * 179.72646 * 18 17 16 39 39 H 1.07999 * 120.00577 * 180.25936 * 19 18 17 40 40 H 1.08003 * 120.00423 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5378 -0.0111 -2.4797 6 1 0.9166 0.8668 -2.3806 7 6 1.8705 -0.4826 -3.7319 8 7 2.6266 -1.5519 -3.8523 9 14 1.2474 0.3974 -5.2572 10 1 1.7422 1.7975 -5.2578 11 1 1.7425 -0.3026 -6.4696 12 1 -0.2377 0.3974 -5.2567 13 6 2.0400 -0.7212 1.2494 14 7 1.5503 -0.0285 2.4487 15 6 2.0217 -0.6941 3.6704 16 6 1.5000 0.0426 4.8772 17 6 2.2354 1.0763 5.4271 18 6 1.7604 1.7487 6.5373 19 6 0.5442 1.3955 7.0916 20 6 -0.1946 0.3652 6.5384 21 17 -1.7217 -0.0792 7.2343 22 6 0.2842 -0.3114 5.4304 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9565 0.8899 29 1 3.1301 -0.7210 -1.2493 30 1 1.6768 -1.7491 -1.2490 31 1 2.8610 -1.8833 -4.7334 32 1 3.1300 -0.7208 1.2496 33 1 1.6767 -1.7488 1.2495 34 1 1.8197 0.9438 2.4401 35 1 3.1116 -0.6936 3.6871 36 1 1.6586 -1.7217 3.6876 37 1 3.1833 1.3558 4.9914 38 1 2.3372 2.5532 6.9692 39 1 0.1711 1.9237 7.9566 40 1 -0.2920 -1.1162 4.9983 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135122813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:54 Heat of formation + Delta-G solvation = -20.219477 kcal Electronic energy + Delta-G solvation = -19236.661869 eV Core-core repulsion = 16268.419859 eV Total energy + Delta-G solvation = -2968.242011 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.42560 -39.07164 -37.45669 -35.91500 -34.30332 -32.04627 -31.59850 -29.01777 -27.88536 -27.41767 -25.77244 -23.90213 -23.59983 -22.18788 -19.57265 -18.32067 -17.92710 -16.94793 -16.63748 -16.46443 -16.00935 -15.71805 -15.39994 -14.74103 -14.60832 -14.45235 -14.22387 -13.96195 -13.85867 -13.33844 -13.30697 -12.75844 -12.72562 -12.48093 -12.39333 -12.35907 -12.25512 -12.20855 -12.11992 -11.91643 -11.71973 -11.36692 -10.85634 -10.75092 -10.49001 -9.87254 -9.66948 -9.26484 -8.13216 -6.20060 0.20125 0.33011 1.18259 1.41538 1.43580 1.50884 2.44405 2.63819 3.20740 3.42475 3.77004 3.93069 4.13469 4.14618 4.23205 4.32977 4.35409 4.39924 4.54288 4.67098 4.80509 4.81073 4.88357 4.97182 5.00205 5.08999 5.22057 5.22944 5.29298 5.40090 5.52956 5.55011 5.57053 5.59605 5.66091 5.86761 5.88496 5.93917 6.06451 6.37954 6.51612 6.95023 7.47212 8.98912 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032171 B = 0.002936 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.147643 B = 9536.066071 C = 9814.431033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.056 4.056 3 C -0.122 4.122 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.269 1.269 13 C 0.082 3.918 14 N -0.679 5.679 15 C 0.097 3.903 16 C -0.073 4.073 17 C -0.113 4.113 18 C -0.104 4.104 19 C -0.116 4.116 20 C -0.048 4.048 21 Cl -0.078 7.078 22 C -0.102 4.102 23 H 0.065 0.935 24 H 0.037 0.963 25 H 0.029 0.971 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.066 0.934 29 H -0.014 1.014 30 H -0.016 1.016 31 H 0.260 0.740 32 H 0.023 0.977 33 H 0.058 0.942 34 H 0.345 0.655 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.142 0.858 38 H 0.159 0.841 39 H 0.148 0.852 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.253 6.551 23.597 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.056 4.056 3 C -0.179 4.179 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.780 3.220 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.194 1.194 13 C -0.047 4.047 14 N -0.312 5.312 15 C -0.031 4.031 16 C -0.074 4.074 17 C -0.131 4.131 18 C -0.122 4.122 19 C -0.135 4.135 20 C -0.074 4.074 21 Cl -0.049 7.049 22 C -0.122 4.122 23 H 0.084 0.916 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.004 0.996 30 H 0.002 0.998 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.165 0.835 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.160 0.840 38 H 0.177 0.823 39 H 0.166 0.834 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.918 6.069 23.528 24.473 hybrid contribution 0.600 -0.016 -1.218 1.358 sum -2.319 6.053 22.310 23.233 Atomic orbital electron populations 1.21500 0.94502 1.00030 1.00383 1.20503 0.96150 0.95701 0.93266 1.21677 0.99564 0.95543 1.01105 1.18997 0.94032 0.94053 0.92607 1.21605 1.30244 1.11979 0.91517 0.91672 1.25907 0.95716 0.95894 1.02530 1.70101 1.38842 1.24901 1.24085 0.85651 0.78905 0.78845 0.78575 1.19226 1.21365 1.19430 1.21833 0.96110 0.97538 0.89185 1.60537 1.63676 1.06643 1.00318 1.20891 0.97644 0.97844 0.86761 1.19777 0.94282 0.97019 0.96273 1.21445 1.00603 0.94796 0.96294 1.21409 0.95219 1.00056 0.95554 1.21328 0.95014 0.96107 1.01075 1.21074 0.89254 0.99646 0.97472 1.98366 1.30256 1.92434 1.83888 1.21004 0.96027 1.00438 0.94695 0.91594 0.94382 0.95145 0.94216 0.93581 0.91512 0.99596 0.99783 0.93166 0.95890 0.92365 0.83517 0.93279 0.90400 0.84026 0.82340 0.83426 0.85392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.07 8.06 71.98 0.58 -3.49 16 2 C -0.06 -2.18 0.60 -52.18 -0.03 -2.21 16 3 C -0.12 -4.29 7.89 71.98 0.57 -3.72 16 4 C 0.04 2.09 4.04 29.85 0.12 2.21 16 5 C -0.52 -28.48 7.65 25.60 0.20 -28.28 16 6 H 0.07 3.45 5.68 -2.91 -0.02 3.44 16 7 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 8 N -0.94 -57.34 13.29 21.45 0.28 -57.06 16 9 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 C 0.08 2.71 4.65 86.30 0.40 3.11 16 14 N -0.68 -17.79 5.70 -517.93 -2.95 -20.75 16 15 C 0.10 2.11 5.81 85.56 0.50 2.60 16 16 C -0.07 -1.44 5.39 -19.87 -0.11 -1.55 16 17 C -0.11 -1.81 9.70 22.27 0.22 -1.60 16 18 C -0.10 -1.43 10.05 22.26 0.22 -1.21 16 19 C -0.12 -1.82 9.83 22.29 0.22 -1.60 16 20 C -0.05 -0.93 6.32 22.32 0.14 -0.79 16 21 Cl -0.08 -1.50 28.96 -2.72 -0.08 -1.58 16 22 C -0.10 -2.15 9.49 22.29 0.21 -1.93 16 23 H 0.07 2.20 7.60 -2.39 -0.02 2.18 16 24 H 0.04 1.55 6.62 -2.39 -0.02 1.53 16 25 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 1.79 6.62 -2.38 -0.02 1.77 16 28 H 0.07 1.90 6.57 -2.39 -0.02 1.89 16 29 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 30 H -0.02 -0.93 8.14 -2.39 -0.02 -0.94 16 31 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.34 8.43 6.76 -89.69 -0.61 7.83 16 35 H 0.05 0.98 8.09 -2.39 -0.02 0.96 16 36 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 37 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 39 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 40 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -63.15 339.16 3.39 -59.76 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.41 Total: 11.37 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 3.70 Total: -38.21 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -2.67 Total: -77.80 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -63.15 3.39 -59.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135122813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.538 kcal (2) G-P(sol) polarization free energy of solvation -63.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds