Wall clock time and date at job start Tue Mar 31 2020 05:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34705 * 117.00181 * 2 1 4 4 O 1.21468 * 120.00176 * 0.02562 * 3 2 1 5 5 C 1.47740 * 120.00033 * 180.02562 * 3 2 1 6 6 C 1.39651 * 120.13462 * 359.97438 * 5 3 2 7 7 C 1.37930 * 119.89716 * 180.02562 * 6 5 3 8 8 C 1.38352 * 120.17586 * 359.72666 * 7 6 5 9 9 C 1.50699 * 119.85814 * 180.27641 * 8 7 6 10 10 N 1.46899 * 109.47249 * 260.27445 * 9 8 7 11 11 C 1.46900 * 110.99993 * 293.95534 * 10 9 8 12 12 C 1.46902 * 111.00005 * 169.99888 * 10 9 8 13 13 C 1.50701 * 109.47024 * 189.99767 * 12 10 9 14 14 H 1.08008 * 120.00160 * 0.02562 * 13 12 10 15 15 C 1.37877 * 120.00309 * 179.97438 * 13 12 10 16 16 N 1.31519 * 119.99764 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00267 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46955 * 89.99922 * 17 15 13 19 19 H 1.48499 * 109.47516 * 210.00190 * 17 15 13 20 20 H 1.48502 * 109.47087 * 330.00597 * 17 15 13 21 21 C 1.38559 * 120.28139 * 0.54742 * 8 7 6 22 22 F 1.35104 * 119.95081 * 179.72260 * 21 8 7 23 23 C 1.38198 * 120.09645 * 359.45504 * 21 8 7 24 24 H 1.09002 * 109.47008 * 59.99401 * 1 2 3 25 25 H 1.09001 * 109.47418 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46762 * 300.00389 * 1 2 3 27 27 H 1.07996 * 120.04941 * 0.04185 * 6 5 3 28 28 H 1.07997 * 119.91112 * 180.02562 * 7 6 5 29 29 H 1.09004 * 109.47176 * 20.27641 * 9 8 7 30 30 H 1.09003 * 109.47484 * 140.27342 * 9 8 7 31 31 H 1.08998 * 109.47197 * 59.99598 * 11 10 9 32 32 H 1.09001 * 109.47417 * 180.02562 * 11 10 9 33 33 H 1.09002 * 109.47027 * 300.00021 * 11 10 9 34 34 H 1.08990 * 109.47370 * 310.00111 * 12 10 9 35 35 H 1.08998 * 109.46882 * 70.00375 * 12 10 9 36 36 H 0.96993 * 119.99602 * 180.02562 * 16 15 13 37 37 H 1.07991 * 120.08934 * 180.25118 * 23 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3023 0.1080 -0.0006 7 6 5.6794 0.1859 -0.0006 8 6 6.3062 1.4193 -0.0063 9 6 7.8112 1.4960 -0.0125 10 7 8.2939 1.7581 1.3499 11 6 7.8779 3.0902 1.8086 12 6 9.7527 1.6054 1.4301 13 6 10.1825 1.6378 2.8742 14 1 9.4456 1.7592 3.6544 15 6 11.5164 1.5114 3.1995 16 7 12.4137 1.3630 2.2495 17 14 12.0491 1.5508 4.9894 18 1 12.0401 0.1713 5.5391 19 1 13.4201 2.1131 5.0857 20 1 11.1104 2.3993 5.7667 21 6 5.5561 2.5843 -0.0006 22 9 6.1751 3.7851 -0.0006 23 6 4.1756 2.5196 -0.0006 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.8150 -0.8558 -0.0008 28 1 6.2699 -0.7183 -0.0010 29 1 8.2217 0.5508 -0.3679 30 1 8.1313 2.3021 -0.6727 31 1 6.7897 3.1522 1.8053 32 1 8.2488 3.2586 2.8197 33 1 8.2871 3.8485 1.1409 34 1 10.0434 0.6535 0.9858 35 1 10.2336 2.4206 0.8896 36 1 13.3520 1.2737 2.4784 37 1 3.5911 3.4277 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135727240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:40 Heat of formation + Delta-G solvation = -94.143545 kcal Electronic energy + Delta-G solvation = -21433.906881 eV Core-core repulsion = 17898.289813 eV Total energy + Delta-G solvation = -3535.617069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.93638 -40.75199 -38.98723 -36.77648 -36.35888 -32.88361 -31.72944 -30.75783 -28.44174 -27.23454 -26.75395 -24.58753 -22.86587 -22.54254 -21.09610 -20.18213 -18.51281 -17.44970 -16.63059 -16.51909 -16.28928 -16.03076 -15.99829 -15.38157 -14.73442 -14.13985 -14.06219 -13.81342 -13.73353 -13.66967 -13.36517 -12.76577 -12.44222 -12.29328 -11.96644 -11.80513 -11.60469 -11.31808 -11.09365 -11.00739 -10.83682 -10.75200 -10.65482 -10.41100 -9.92512 -9.30037 -9.10423 -8.79521 -8.45328 -7.33587 -6.05358 -4.06669 0.44437 1.09090 2.29667 2.37023 3.31376 3.37253 3.41120 3.50181 4.20782 4.40546 4.43950 4.62367 4.78679 4.80108 4.88582 4.88957 5.11881 5.13335 5.20246 5.31236 5.54192 5.66605 5.84207 5.95120 5.99610 6.03885 6.10683 6.16500 6.29355 6.43364 6.68856 6.78295 7.20589 7.28624 7.47122 7.74758 8.00318 8.11969 8.47664 9.00590 9.57560 11.05606 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030506 B = 0.003385 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.637472 B = 8269.555702 C = 8495.410887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.514 3.486 4 O -0.507 6.507 5 C -0.114 4.114 6 C -0.070 4.070 7 C -0.090 4.090 8 C -0.053 4.053 9 C 0.082 3.918 10 N -0.533 5.533 11 C 0.031 3.969 12 C 0.193 3.807 13 C -0.507 4.507 14 H 0.064 0.936 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.093 3.907 22 F -0.128 7.128 23 C -0.091 4.091 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.017 0.983 34 H 0.032 0.968 35 H -0.007 1.007 36 H 0.262 0.738 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.840 -3.181 -7.003 21.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.359 3.641 4 O -0.396 6.396 5 C -0.116 4.116 6 C -0.089 4.089 7 C -0.108 4.108 8 C -0.055 4.055 9 C -0.046 4.046 10 N -0.257 5.257 11 C -0.118 4.118 12 C 0.068 3.932 13 C -0.546 4.546 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.727 3.273 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.198 1.198 21 C 0.074 3.926 22 F -0.106 7.106 23 C -0.110 4.110 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.161 0.839 28 H 0.163 0.837 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.036 0.964 34 H 0.050 0.950 35 H 0.011 0.989 36 H 0.071 0.929 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -20.040 -3.208 -6.714 21.377 hybrid contribution 0.669 0.931 0.428 1.223 sum -19.371 -2.277 -6.286 20.492 Atomic orbital electron populations 1.23298 0.75840 1.03851 1.02694 1.86541 1.23630 1.32470 1.84309 1.21104 0.88952 0.81451 0.72556 1.90836 1.66796 1.36049 1.45876 1.18692 0.88945 0.94168 1.09785 1.21480 0.93758 0.97913 0.95708 1.20999 0.93844 0.97352 0.98641 1.20471 0.97590 0.91908 0.95510 1.21117 0.88225 1.02209 0.93095 1.62260 1.17262 1.28262 1.17940 1.22489 0.98716 0.89144 1.01430 1.19775 0.79316 0.96370 0.97751 1.21140 0.92106 1.49363 0.91974 0.91801 1.24986 0.96576 0.95400 0.97639 1.69956 1.01578 1.50229 1.32091 0.86480 0.77751 0.78281 0.84799 1.20588 1.21310 1.19838 1.17273 0.89879 0.81079 1.04419 1.91541 1.82619 1.42768 1.93694 1.21074 0.92668 0.98331 0.98976 0.91800 0.87850 0.91734 0.83892 0.83720 0.89427 0.94031 0.93379 0.90772 0.96442 0.95032 0.98888 0.92883 0.83567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.57 9.82 -40.50 -0.40 -3.97 16 3 C 0.51 6.31 7.90 34.61 0.27 6.59 16 4 O -0.51 -7.31 16.14 -19.24 -0.31 -7.62 16 5 C -0.11 -1.40 5.87 -104.99 -0.62 -2.02 16 6 C -0.07 -0.77 9.62 -39.17 -0.38 -1.14 16 7 C -0.09 -1.09 9.65 -39.65 -0.38 -1.48 16 8 C -0.05 -0.79 5.17 -104.46 -0.54 -1.33 16 9 C 0.08 1.42 5.00 -4.98 -0.02 1.39 16 10 N -0.53 -11.41 4.74 -245.82 -1.17 -12.58 16 11 C 0.03 0.62 7.91 60.06 0.48 1.10 16 12 C 0.19 4.94 4.72 -4.97 -0.02 4.92 16 13 C -0.51 -14.15 8.46 -34.44 -0.29 -14.44 16 14 H 0.06 1.77 7.13 -52.48 -0.37 1.40 16 15 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 17 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.09 1.37 5.87 -39.48 -0.23 1.14 16 22 F -0.13 -2.04 13.77 2.25 0.03 -2.01 16 23 C -0.09 -1.21 9.57 -39.10 -0.37 -1.58 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.14 1.21 7.61 -52.49 -0.40 0.81 16 28 H 0.15 1.52 8.03 -52.49 -0.42 1.09 16 29 H 0.09 1.42 7.79 -51.93 -0.40 1.01 16 30 H 0.04 0.73 7.91 -51.93 -0.41 0.32 16 31 H 0.05 0.88 5.06 -51.93 -0.26 0.62 16 32 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 33 H 0.02 0.35 7.80 -51.93 -0.41 -0.05 16 34 H 0.03 0.85 7.93 -51.93 -0.41 0.43 16 35 H -0.01 -0.18 8.12 -51.93 -0.42 -0.61 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.15 1.83 7.65 -52.49 -0.40 1.43 16 LS Contribution 318.89 15.07 4.81 4.81 Total: -1.00 -31.52 318.89 -7.13 -38.65 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -4.67 Total: -4.01 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.14 Total: -4.07 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.43 Total: -38.32 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.71 Total: -11.59 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.03 Total: -2.01 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.52 -7.13 -38.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135727240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.491 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds