Wall clock time and date at job start Tue Mar 31 2020 05:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47299 * 2 1 4 4 C 1.37097 * 119.99774 * 264.76837 * 3 2 1 5 5 H 1.08002 * 120.00340 * 138.84765 * 4 3 2 6 6 C 1.38957 * 119.99828 * 318.84986 * 4 3 2 7 7 N 1.31407 * 119.99869 * 341.83455 * 6 4 3 8 8 Si 1.86802 * 119.99957 * 161.83370 * 6 4 3 9 9 H 1.48506 * 109.47029 * 59.99909 * 8 6 4 10 10 H 1.48497 * 109.47199 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47124 * 300.00183 * 8 6 4 12 12 C 1.34778 * 120.00043 * 84.76485 * 3 2 1 13 13 O 1.21297 * 119.99590 * 179.97438 * 12 3 2 14 14 C 1.50695 * 120.00197 * 0.02562 * 12 3 2 15 15 C 1.53003 * 109.47034 * 179.97438 * 14 12 3 16 16 C 1.52998 * 109.46911 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.47164 * 180.02562 * 16 15 14 18 18 S 1.75882 * 125.20388 * 270.02651 * 17 16 15 19 19 C 1.75883 * 90.96962 * 179.97438 * 18 17 16 20 20 C 1.33383 * 109.59577 * 0.02562 * 19 18 17 21 21 C 1.33393 * 125.20154 * 89.71655 * 17 16 15 22 22 C 1.50700 * 122.54041 * 0.02562 * 21 17 16 23 23 H 1.09000 * 109.46591 * 60.00135 * 1 2 3 24 24 H 1.08993 * 109.47087 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47137 * 300.00687 * 1 2 3 26 26 H 1.08992 * 109.47478 * 239.99679 * 2 1 3 27 27 H 1.09007 * 109.46713 * 119.99523 * 2 1 3 28 28 H 0.97004 * 119.99778 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.46591 * 59.99958 * 14 12 3 30 30 H 1.08997 * 109.47112 * 299.99826 * 14 12 3 31 31 H 1.08997 * 109.47386 * 300.00096 * 15 14 12 32 32 H 1.09002 * 109.46559 * 60.00184 * 15 14 12 33 33 H 1.09005 * 109.47335 * 300.00015 * 16 15 14 34 34 H 1.09000 * 109.47169 * 60.00159 * 16 15 14 35 35 H 1.08007 * 125.20023 * 180.02562 * 19 18 17 36 36 H 1.08004 * 122.54098 * 180.02562 * 20 19 18 37 37 H 1.08993 * 109.47200 * 89.99609 * 22 21 17 38 38 H 1.09000 * 109.46878 * 209.99901 * 22 21 17 39 39 H 1.09005 * 109.46930 * 329.99389 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3490 1.9914 -1.1824 5 1 2.0744 3.0218 -1.3536 6 6 3.0373 1.2840 -2.1605 7 7 3.6791 0.1816 -1.8450 8 14 3.0502 1.9002 -3.9239 9 1 3.6539 3.2563 -3.9700 10 1 3.8494 0.9743 -4.7660 11 1 1.6581 1.9605 -4.4374 12 6 2.1427 2.0521 1.1623 13 8 2.5475 3.1955 1.1623 14 6 1.7798 1.3812 2.4620 15 6 2.0117 2.3539 3.6201 16 6 1.6439 1.6726 4.9397 17 6 1.8717 2.6308 6.0804 18 16 3.3749 2.7998 6.9778 19 6 2.6655 4.0524 7.9884 20 6 1.4022 4.2649 7.6168 21 6 0.9659 3.4845 6.5600 22 6 -0.4282 3.5881 5.9973 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 4.1600 -0.3120 -2.5277 29 1 2.4019 0.4970 2.6005 30 1 0.7305 1.0873 2.4386 31 1 3.0611 2.6475 3.6434 32 1 1.3899 3.2384 3.4817 33 1 0.5944 1.3786 4.9167 34 1 2.2660 0.7883 5.0778 35 1 3.1750 4.5702 8.7877 36 1 0.7694 4.9944 8.1003 37 1 -1.0858 2.8985 6.5265 38 1 -0.7951 4.6070 6.1208 39 1 -0.4121 3.3337 4.9375 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162891205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:44 Heat of formation + Delta-G solvation = -21.802529 kcal Electronic energy + Delta-G solvation = -19572.437511 eV Core-core repulsion = 16606.170560 eV Total energy + Delta-G solvation = -2966.266951 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -38.78506 -38.32197 -35.13038 -34.22360 -32.03792 -30.80126 -29.39007 -28.88671 -25.98184 -24.47658 -22.79788 -22.20298 -21.29936 -18.69015 -18.28941 -17.16812 -16.67976 -15.72157 -15.41019 -15.13704 -14.66290 -14.18211 -13.97337 -13.71899 -13.14875 -12.92019 -12.82724 -12.62943 -12.27485 -12.19053 -11.87148 -11.73399 -11.68132 -11.41435 -11.14563 -11.09063 -10.96782 -10.77856 -10.65797 -10.42921 -10.32924 -10.19144 -10.01487 -8.86934 -8.54166 -8.31414 -8.27431 -7.36207 -6.27358 -3.95543 1.03033 1.67863 2.04438 2.70121 3.22636 3.27552 3.31202 4.00575 4.20511 4.73551 4.90500 4.98554 5.06972 5.16332 5.38266 5.44165 5.46953 5.49907 5.62685 5.75114 5.85860 5.89180 5.91024 5.96010 6.03409 6.08199 6.18249 6.24771 6.40012 6.46847 6.50786 6.56737 6.66020 6.76845 6.90736 7.25387 7.62681 8.35634 8.58566 9.26347 9.46869 10.10140 10.77962 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029815 B = 0.003505 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.897473 B = 7986.848832 C = 8210.357917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.444 5.444 4 C -0.309 4.309 5 H 0.086 0.914 6 C 0.038 3.962 7 N -0.874 5.874 8 Si 0.917 3.083 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.462 3.538 13 O -0.581 6.581 14 C -0.135 4.135 15 C -0.093 4.093 16 C -0.052 4.052 17 C -0.160 4.160 18 S 0.091 5.909 19 C -0.223 4.223 20 C -0.127 4.127 21 C -0.117 4.117 22 C -0.094 4.094 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.102 0.898 27 H 0.048 0.952 28 H 0.267 0.733 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.136 0.864 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 0.002 15.856 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.020 4.020 3 N -0.164 5.164 4 C -0.437 4.437 5 H 0.104 0.896 6 C -0.166 4.166 7 N -0.511 5.511 8 Si 0.744 3.256 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.250 3.750 13 O -0.465 6.465 14 C -0.175 4.175 15 C -0.131 4.131 16 C -0.091 4.091 17 C -0.277 4.277 18 S 0.356 5.644 19 C -0.359 4.359 20 C -0.158 4.158 21 C -0.128 4.128 22 C -0.153 4.153 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.120 0.880 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.178 0.822 36 H 0.154 0.846 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.411 -0.274 15.690 16.301 hybrid contribution -1.188 0.806 -0.704 1.599 sum -5.599 0.532 14.987 16.007 Atomic orbital electron populations 1.22227 0.98349 1.00259 1.01498 1.21432 0.91508 0.85749 1.03356 1.43458 1.56339 1.11705 1.04918 1.19327 1.34779 0.98461 0.91152 0.89638 1.25407 0.94098 0.96585 1.00487 1.69919 1.29601 1.17629 1.33994 0.86157 0.78315 0.78841 0.82311 1.19770 1.21016 1.19933 1.20403 0.81748 0.87870 0.84975 1.90516 1.50085 1.18907 1.86983 1.21653 1.02163 0.99424 0.94297 1.21275 1.02936 0.98217 0.90681 1.20268 1.02474 0.95581 0.90766 1.24394 0.96129 1.04156 1.03069 1.84313 1.15155 1.36434 1.28518 1.25489 0.99093 1.05094 1.06186 1.20022 0.95706 1.01688 0.98336 1.18833 0.97898 0.97943 0.98152 1.20518 0.91521 1.02071 1.01233 0.92497 0.93183 0.93840 0.88009 0.93379 0.92312 0.90270 0.90476 0.91318 0.91246 0.90036 0.90873 0.82222 0.84644 0.91552 0.91711 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 10.15 37.16 0.38 -2.54 16 2 C 0.10 2.24 5.41 -4.04 -0.02 2.22 16 3 N -0.44 -11.34 2.50 -114.81 -0.29 -11.62 16 4 C -0.31 -8.69 8.84 -14.93 -0.13 -8.83 16 5 H 0.09 2.51 7.82 -52.49 -0.41 2.10 16 6 C 0.04 1.03 4.95 -17.47 -0.09 0.94 16 7 N -0.87 -23.89 11.61 55.50 0.64 -23.25 16 8 Si 0.92 20.88 29.59 -169.99 -5.03 15.85 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 C 0.46 11.37 7.59 -10.99 -0.08 11.29 16 13 O -0.58 -16.52 15.89 5.54 0.09 -16.43 16 14 C -0.13 -2.45 4.31 -27.88 -0.12 -2.57 16 15 C -0.09 -1.54 4.49 -26.73 -0.12 -1.66 16 16 C -0.05 -0.67 5.07 -27.88 -0.14 -0.81 16 17 C -0.16 -2.11 5.76 -36.00 -0.21 -2.32 16 18 S 0.09 1.12 23.33 -107.50 -2.51 -1.39 16 19 C -0.22 -2.45 11.23 29.04 0.33 -2.12 16 20 C -0.13 -1.42 9.98 -41.21 -0.41 -1.83 16 21 C -0.12 -1.44 5.80 -106.25 -0.62 -2.05 16 22 C -0.09 -0.98 9.60 36.01 0.35 -0.64 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.71 6.60 -51.93 -0.34 0.37 16 26 H 0.10 2.43 5.76 -51.93 -0.30 2.14 16 27 H 0.05 0.94 6.66 -51.92 -0.35 0.59 16 28 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.08 1.35 7.41 -51.93 -0.38 0.97 16 30 H 0.08 1.22 6.54 -51.93 -0.34 0.88 16 31 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 32 H 0.07 1.23 7.79 -51.93 -0.40 0.82 16 33 H 0.08 0.93 7.33 -51.93 -0.38 0.55 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.16 1.35 8.06 -52.48 -0.42 0.92 16 36 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 39 H 0.07 0.80 6.95 -51.93 -0.36 0.44 16 LS Contribution 333.49 15.07 5.03 5.03 Total: -1.00 -31.71 333.49 -8.74 -40.45 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.78 Total: 2.29 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -0.89 Total: -10.92 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.36 Total: -34.87 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: 0.09 Total: -16.43 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.51 Total: -1.39 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.71 -8.74 -40.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162891205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.645 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds