Wall clock time and date at job start Tue Mar 31 2020 05:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47299 * 2 1 4 4 C 1.37097 * 119.99774 * 264.76837 * 3 2 1 5 5 H 1.08002 * 120.00340 * 138.84765 * 4 3 2 6 6 C 1.38957 * 119.99828 * 318.84986 * 4 3 2 7 7 N 1.31407 * 119.99869 * 341.83455 * 6 4 3 8 8 Si 1.86802 * 119.99957 * 161.83370 * 6 4 3 9 9 H 1.48506 * 109.47029 * 59.99909 * 8 6 4 10 10 H 1.48497 * 109.47199 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47124 * 300.00183 * 8 6 4 12 12 C 1.34778 * 120.00043 * 84.76485 * 3 2 1 13 13 O 1.21297 * 119.99590 * 179.97438 * 12 3 2 14 14 C 1.50695 * 120.00197 * 0.02562 * 12 3 2 15 15 C 1.53003 * 109.47034 * 179.97438 * 14 12 3 16 16 C 1.52998 * 109.46911 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.47164 * 180.02562 * 16 15 14 18 18 S 1.75882 * 125.20388 * 270.02651 * 17 16 15 19 19 C 1.75883 * 90.96962 * 179.97438 * 18 17 16 20 20 C 1.33383 * 109.59577 * 0.02562 * 19 18 17 21 21 C 1.33393 * 125.20154 * 89.71655 * 17 16 15 22 22 C 1.50700 * 122.54041 * 0.02562 * 21 17 16 23 23 H 1.09000 * 109.46591 * 60.00135 * 1 2 3 24 24 H 1.08993 * 109.47087 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47137 * 300.00687 * 1 2 3 26 26 H 1.08992 * 109.47478 * 239.99679 * 2 1 3 27 27 H 1.09007 * 109.46713 * 119.99523 * 2 1 3 28 28 H 0.97004 * 119.99778 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.46591 * 59.99958 * 14 12 3 30 30 H 1.08997 * 109.47112 * 299.99826 * 14 12 3 31 31 H 1.08997 * 109.47386 * 300.00096 * 15 14 12 32 32 H 1.09002 * 109.46559 * 60.00184 * 15 14 12 33 33 H 1.09005 * 109.47335 * 300.00015 * 16 15 14 34 34 H 1.09000 * 109.47169 * 60.00159 * 16 15 14 35 35 H 1.08007 * 125.20023 * 180.02562 * 19 18 17 36 36 H 1.08004 * 122.54098 * 180.02562 * 20 19 18 37 37 H 1.08993 * 109.47200 * 89.99609 * 22 21 17 38 38 H 1.09000 * 109.46878 * 209.99901 * 22 21 17 39 39 H 1.09005 * 109.46930 * 329.99389 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3490 1.9914 -1.1824 5 1 2.0744 3.0218 -1.3536 6 6 3.0373 1.2840 -2.1605 7 7 3.6791 0.1816 -1.8450 8 14 3.0502 1.9002 -3.9239 9 1 3.6539 3.2563 -3.9700 10 1 3.8494 0.9743 -4.7660 11 1 1.6581 1.9605 -4.4374 12 6 2.1427 2.0521 1.1623 13 8 2.5475 3.1955 1.1623 14 6 1.7798 1.3812 2.4620 15 6 2.0117 2.3539 3.6201 16 6 1.6439 1.6726 4.9397 17 6 1.8717 2.6308 6.0804 18 16 3.3749 2.7998 6.9778 19 6 2.6655 4.0524 7.9884 20 6 1.4022 4.2649 7.6168 21 6 0.9659 3.4845 6.5600 22 6 -0.4282 3.5881 5.9973 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 4.1600 -0.3120 -2.5277 29 1 2.4019 0.4970 2.6005 30 1 0.7305 1.0873 2.4386 31 1 3.0611 2.6475 3.6434 32 1 1.3899 3.2384 3.4817 33 1 0.5944 1.3786 4.9167 34 1 2.2660 0.7883 5.0778 35 1 3.1750 4.5702 8.7877 36 1 0.7694 4.9944 8.1003 37 1 -1.0858 2.8985 6.5265 38 1 -0.7951 4.6070 6.1208 39 1 -0.4121 3.3337 4.9375 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162891205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:43 Heat of formation + Delta-G solvation = -38.980377 kcal Electronic energy + Delta-G solvation = -19573.182399 eV Core-core repulsion = 16606.170560 eV Total energy + Delta-G solvation = -2967.011838 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.49184 -39.40077 -36.96439 -35.60078 -33.99306 -31.87228 -31.10392 -30.00088 -27.46908 -26.02853 -24.06198 -23.58440 -22.57698 -20.46227 -19.23475 -18.69991 -18.15247 -17.53107 -16.93783 -16.51691 -16.06284 -15.86889 -15.18752 -14.92677 -14.58868 -14.48976 -14.04536 -13.85264 -13.59617 -13.49552 -13.24546 -13.00439 -12.88936 -12.76229 -12.63613 -12.55384 -12.45104 -12.29388 -12.12540 -11.99772 -11.84991 -11.62672 -11.43063 -10.86118 -10.30108 -9.45592 -9.36718 -9.21534 -8.32490 -6.08990 0.12010 0.77708 1.15097 1.39561 1.40268 1.50662 1.82047 2.11330 2.31212 3.02951 3.12800 3.81957 4.00252 4.04922 4.12146 4.31441 4.34295 4.42479 4.55844 4.63077 4.66570 4.71087 4.74505 4.79460 4.87007 4.88943 4.96047 5.09042 5.15593 5.17164 5.26800 5.33965 5.40849 5.46955 5.58845 5.59547 5.71993 6.25716 6.59578 7.22130 7.51714 8.13161 8.70979 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029815 B = 0.003505 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.897473 B = 7986.848832 C = 8210.357917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.457 5.457 4 C -0.345 4.345 5 H 0.058 0.942 6 C 0.004 3.996 7 N -0.892 5.892 8 Si 0.980 3.020 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.262 1.262 12 C 0.444 3.556 13 O -0.633 6.633 14 C -0.120 4.120 15 C -0.082 4.082 16 C -0.040 4.040 17 C -0.187 4.187 18 S 0.061 5.939 19 C -0.215 4.215 20 C -0.138 4.138 21 C -0.119 4.119 22 C -0.095 4.095 23 H 0.038 0.962 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.272 0.728 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.185 0.815 36 H 0.160 0.840 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.643 -0.906 16.871 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.022 4.022 3 N -0.177 5.177 4 C -0.473 4.473 5 H 0.076 0.924 6 C -0.198 4.198 7 N -0.530 5.530 8 Si 0.803 3.197 9 H -0.205 1.205 10 H -0.196 1.196 11 H -0.187 1.187 12 C 0.234 3.766 13 O -0.521 6.521 14 C -0.160 4.160 15 C -0.120 4.120 16 C -0.079 4.079 17 C -0.304 4.304 18 S 0.326 5.674 19 C -0.350 4.350 20 C -0.168 4.168 21 C -0.131 4.131 22 C -0.154 4.154 23 H 0.057 0.943 24 H 0.104 0.896 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.202 0.798 36 H 0.178 0.822 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.877 -1.226 16.710 17.756 hybrid contribution -0.707 1.129 -0.978 1.653 sum -6.584 -0.096 15.732 17.054 Atomic orbital electron populations 1.22113 0.95140 1.02548 1.01391 1.21566 0.94110 0.83440 1.03064 1.43782 1.56266 1.13049 1.04563 1.19306 1.36636 0.98056 0.93301 0.92432 1.26135 0.93144 0.96631 1.03897 1.69986 1.29486 1.18219 1.35279 0.85220 0.78913 0.77971 0.77576 1.20519 1.19576 1.18690 1.21510 0.80761 0.87491 0.86818 1.90471 1.52300 1.21311 1.87993 1.21601 1.04153 0.99395 0.90830 1.21129 1.00788 0.97735 0.92388 1.20134 1.03851 0.95400 0.88483 1.24462 0.96567 1.05411 1.03972 1.84380 1.15835 1.37761 1.29462 1.25838 0.99040 1.04095 1.06070 1.20335 0.96158 1.02088 0.98250 1.19220 0.98571 0.97224 0.98047 1.20578 0.90841 1.03274 1.00707 0.94308 0.89607 0.92252 0.90562 0.91317 0.91801 0.88711 0.87332 0.94275 0.92849 0.87906 0.89981 0.79752 0.82241 0.89748 0.90644 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 10.15 71.98 0.73 -4.37 16 2 C 0.10 4.28 5.41 86.38 0.47 4.75 16 3 N -0.46 -23.70 2.50 -635.52 -1.59 -25.30 16 4 C -0.34 -20.01 8.84 84.04 0.74 -19.26 16 5 H 0.06 3.57 7.82 -2.91 -0.02 3.55 16 6 C 0.00 0.24 4.95 84.93 0.42 0.66 16 7 N -0.89 -49.03 11.61 21.66 0.25 -48.77 16 8 Si 0.98 43.15 29.59 68.60 2.03 45.18 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 12 C 0.44 22.30 7.59 87.66 0.67 22.96 16 13 O -0.63 -37.64 15.89 -3.08 -0.05 -37.69 16 14 C -0.12 -4.22 4.31 29.85 0.13 -4.09 16 15 C -0.08 -2.71 4.49 30.59 0.14 -2.57 16 16 C -0.04 -0.97 5.07 29.85 0.15 -0.82 16 17 C -0.19 -4.74 5.76 24.59 0.14 -4.60 16 18 S 0.06 1.47 23.33 -56.49 -1.32 0.15 16 19 C -0.22 -4.34 11.23 66.72 0.75 -3.59 16 20 C -0.14 -2.80 9.98 21.22 0.21 -2.59 16 21 C -0.12 -2.72 5.80 -20.92 -0.12 -2.84 16 22 C -0.10 -1.78 9.60 71.24 0.68 -1.09 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.06 1.77 6.60 -2.39 -0.02 1.75 16 26 H 0.08 3.63 5.76 -2.39 -0.01 3.62 16 27 H 0.07 2.56 6.66 -2.38 -0.02 2.55 16 28 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 29 H 0.09 3.06 7.41 -2.39 -0.02 3.04 16 30 H 0.11 3.14 6.54 -2.39 -0.02 3.12 16 31 H 0.04 1.50 8.10 -2.39 -0.02 1.48 16 32 H 0.05 1.92 7.79 -2.39 -0.02 1.90 16 33 H 0.10 2.07 7.33 -2.38 -0.02 2.05 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 39 H 0.06 1.28 6.95 -2.38 -0.02 1.26 16 Total: -1.00 -71.61 333.49 5.46 -66.14 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 1.03 Total: 17.75 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 5.11 Total: -17.46 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -1.34 Total: -74.07 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.05 Total: -37.69 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -1.32 Total: 0.15 kcal Total: -71.61 5.46 -66.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162891205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.164 kcal (2) G-P(sol) polarization free energy of solvation -71.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds