Wall clock time and date at job start Tue Mar 31 2020 05:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47271 * 2 1 4 4 C 1.37097 * 120.00258 * 264.74652 * 3 2 1 5 5 H 1.08001 * 120.00118 * 146.16553 * 4 3 2 6 6 C 1.38950 * 119.99877 * 326.16921 * 4 3 2 7 7 N 1.31414 * 120.00368 * 337.67996 * 6 4 3 8 8 Si 1.86799 * 119.99843 * 157.67951 * 6 4 3 9 9 H 1.48500 * 109.47272 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47245 * 120.00166 * 8 6 4 11 11 H 1.48502 * 109.47103 * 239.99865 * 8 6 4 12 12 C 1.34775 * 119.99883 * 84.74658 * 3 2 1 13 13 O 1.21292 * 120.00277 * 179.97438 * 12 3 2 14 14 C 1.50703 * 119.99993 * 0.02562 * 12 3 2 15 15 O 1.42900 * 109.47184 * 179.97438 * 14 12 3 16 16 C 1.35949 * 117.00061 * 179.97438 * 15 14 12 17 17 C 1.38659 * 120.06354 * 0.02562 * 16 15 14 18 18 C 1.38179 * 119.97036 * 179.97438 * 17 16 15 19 19 C 1.50701 * 119.95336 * 179.97438 * 18 17 16 20 20 C 1.38260 * 120.09693 * 0.02562 * 18 17 16 21 21 C 1.38261 * 120.12757 * 359.95125 * 20 18 17 22 22 C 1.38337 * 120.02378 * 0.05239 * 21 20 18 23 23 F 1.35103 * 120.04507 * 180.25483 * 22 21 20 24 24 H 1.08992 * 109.47401 * 300.00148 * 1 2 3 25 25 H 1.09000 * 109.47100 * 60.00225 * 1 2 3 26 26 H 1.09001 * 109.47511 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47047 * 239.99669 * 2 1 3 28 28 H 1.08998 * 109.46920 * 120.00277 * 2 1 3 29 29 H 0.96993 * 120.00234 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47426 * 59.99843 * 14 12 3 31 31 H 1.09004 * 109.46421 * 299.99471 * 14 12 3 32 32 H 1.07995 * 120.01498 * 359.95408 * 17 16 15 33 33 H 1.09007 * 109.46647 * 89.99961 * 19 18 17 34 34 H 1.08998 * 109.47401 * 209.99692 * 19 18 17 35 35 H 1.08996 * 109.47109 * 330.00280 * 19 18 17 36 36 H 1.08005 * 119.94222 * 179.97438 * 20 18 17 37 37 H 1.07991 * 119.98864 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9912 -1.1823 5 1 2.1815 3.0506 -1.3088 6 6 2.9006 1.2466 -2.2178 7 7 3.5051 0.1087 -1.9595 8 14 2.7825 1.8630 -3.9772 9 1 2.0592 3.1597 -3.9999 10 1 4.1485 2.0490 -4.5294 11 1 2.0465 0.8706 -4.8010 12 6 2.1422 2.0521 1.1623 13 8 2.5470 3.1955 1.1624 14 6 1.7789 1.3813 2.4620 15 8 1.9951 2.2897 3.5436 16 6 1.7135 1.8382 4.7946 17 6 1.2396 0.5479 4.9770 18 6 0.9544 0.0907 6.2494 19 6 0.4388 -1.3115 6.4472 20 6 1.1404 0.9182 7.3414 21 6 1.6132 2.2053 7.1642 22 6 1.9003 2.6683 5.8926 23 9 2.3671 3.9242 5.7194 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8899 29 1 3.8903 -0.4109 -2.6823 30 1 2.4008 0.4971 2.6008 31 1 0.7295 1.0874 2.4381 32 1 1.0931 -0.0993 4.1250 33 1 1.2793 -1.9911 6.5883 34 1 -0.2043 -1.3415 7.3267 35 1 -0.1313 -1.6161 5.5696 36 1 0.9163 0.5584 8.3348 37 1 1.7580 2.8495 8.0187 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163483530.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:24 Heat of formation + Delta-G solvation = -88.120961 kcal Electronic energy + Delta-G solvation = -21867.110328 eV Core-core repulsion = 18331.754418 eV Total energy + Delta-G solvation = -3535.355910 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.57533 -40.08030 -38.62437 -37.27359 -35.01485 -32.47393 -32.14057 -30.28903 -29.58339 -28.34301 -26.57798 -24.76313 -22.81006 -22.23492 -21.59904 -19.23556 -18.08684 -16.95032 -16.77323 -16.66278 -16.14033 -15.66061 -15.19999 -14.82656 -14.58901 -14.29787 -14.15390 -13.79558 -13.55770 -13.29956 -13.16277 -12.99599 -12.45160 -12.07847 -11.99897 -11.88380 -11.59236 -11.51209 -11.22664 -11.09609 -10.97926 -10.83498 -10.37666 -10.35523 -10.17373 -9.04211 -8.86221 -8.48727 -8.05728 -7.59850 -6.41481 -4.02606 1.07052 1.25917 3.09365 3.11388 3.24208 3.32549 3.50731 3.74663 4.12072 4.31237 4.59622 4.65209 4.82891 4.94083 4.99280 5.09074 5.27796 5.38445 5.42868 5.45714 5.55798 5.60927 5.67963 5.83321 5.96895 6.02371 6.10021 6.14904 6.20279 6.37052 6.39472 6.66469 6.77866 7.15032 7.44160 7.53283 8.14680 8.42223 9.09212 9.28990 9.87954 10.62542 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026792 B = 0.004213 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.848566 B = 6644.147948 C = 7413.633889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.091 3.909 3 N -0.434 5.434 4 C -0.306 4.306 5 H 0.095 0.905 6 C 0.036 3.964 7 N -0.868 5.868 8 Si 0.920 3.080 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.279 1.279 12 C 0.457 3.543 13 O -0.558 6.558 14 C 0.046 3.954 15 O -0.278 6.278 16 C 0.111 3.889 17 C -0.189 4.189 18 C -0.057 4.057 19 C -0.114 4.114 20 C -0.140 4.140 21 C -0.113 4.113 22 C 0.060 3.940 23 F -0.131 7.131 24 H 0.040 0.960 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.118 0.882 28 H 0.046 0.954 29 H 0.269 0.731 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.138 0.862 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.131 0.869 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.075 -6.424 14.390 17.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.033 4.033 3 N -0.156 5.156 4 C -0.433 4.433 5 H 0.113 0.887 6 C -0.168 4.168 7 N -0.507 5.507 8 Si 0.747 3.253 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.205 1.205 12 C 0.243 3.757 13 O -0.440 6.440 14 C -0.032 4.032 15 O -0.189 6.189 16 C 0.064 3.936 17 C -0.208 4.208 18 C -0.057 4.057 19 C -0.171 4.171 20 C -0.158 4.158 21 C -0.132 4.132 22 C 0.040 3.960 23 F -0.110 7.110 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.136 0.864 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.156 0.844 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.149 0.851 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.677 -5.751 14.177 16.693 hybrid contribution 0.024 0.025 -0.897 0.898 sum -6.654 -5.725 13.280 15.919 Atomic orbital electron populations 1.22231 0.97976 1.00565 1.01677 1.21680 0.91912 0.85331 1.04394 1.43447 1.55939 1.11922 1.04243 1.19545 1.39985 0.95730 0.88067 0.88689 1.25360 0.94268 0.96481 1.00706 1.69919 1.32437 1.15290 1.33006 0.85963 0.78233 0.79185 0.81944 1.19060 1.20676 1.20506 1.19763 0.83662 0.88446 0.83826 1.90583 1.49003 1.18232 1.86151 1.22834 1.01475 0.92643 0.86296 1.86289 1.80831 1.40471 1.11310 1.19212 0.96311 0.92747 0.85368 1.21108 1.06191 0.94838 0.98661 1.19744 0.97279 0.96491 0.92234 1.20806 1.01110 0.92355 1.02812 1.20721 1.03170 0.93173 0.98774 1.20949 1.00372 0.97153 0.94732 1.17014 1.05999 0.80923 0.92105 1.91517 1.86321 1.36991 1.96138 0.94075 0.92079 0.92796 0.86421 0.93567 0.92122 0.90034 0.90322 0.84378 0.90787 0.91285 0.91225 0.85150 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 10.15 37.16 0.38 -2.44 16 2 C 0.09 1.88 5.43 -4.05 -0.02 1.86 16 3 N -0.43 -10.91 2.56 -114.82 -0.29 -11.20 16 4 C -0.31 -8.42 8.98 -14.93 -0.13 -8.55 16 5 H 0.10 2.76 7.70 -52.49 -0.40 2.36 16 6 C 0.04 0.93 4.92 -17.47 -0.09 0.85 16 7 N -0.87 -22.80 11.33 55.50 0.63 -22.18 16 8 Si 0.92 20.24 29.61 -169.99 -5.03 15.21 16 9 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 12 C 0.46 11.55 7.67 -10.98 -0.08 11.46 16 13 O -0.56 -16.61 16.32 -14.36 -0.23 -16.84 16 14 C 0.05 0.89 3.83 36.01 0.14 1.03 16 15 O -0.28 -5.79 9.53 -39.49 -0.38 -6.17 16 16 C 0.11 1.88 6.69 -39.18 -0.26 1.62 16 17 C -0.19 -2.55 8.69 -39.45 -0.34 -2.89 16 18 C -0.06 -0.63 5.88 -104.63 -0.62 -1.24 16 19 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 20 C -0.14 -1.44 9.69 -39.56 -0.38 -1.82 16 21 C -0.11 -1.35 10.02 -39.54 -0.40 -1.75 16 22 C 0.06 0.95 7.31 -39.30 -0.29 0.66 16 23 F -0.13 -2.37 17.11 2.25 0.04 -2.33 16 24 H 0.04 0.65 6.59 -51.93 -0.34 0.31 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.12 2.70 5.34 -51.93 -0.28 2.43 16 28 H 0.05 0.85 6.66 -51.93 -0.35 0.50 16 29 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.08 1.42 6.93 -51.93 -0.36 1.06 16 31 H 0.08 1.30 6.06 -51.93 -0.31 0.99 16 32 H 0.14 1.67 6.30 -52.49 -0.33 1.34 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 36 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -32.75 317.66 -6.68 -39.43 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -4.46 Total: 1.03 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.74 Total: -1.74 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.34 Total: -33.38 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.61 Total: -23.01 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.75 -6.68 -39.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163483530.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.688 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds