Wall clock time and date at job start Tue Mar 31 2020 05:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35695 * 117.00081 * 2 1 4 4 C 1.38683 * 120.12503 * 0.03042 * 3 2 1 5 5 C 1.38059 * 120.11451 * 179.97438 * 4 3 2 6 6 C 1.38732 * 120.36539 * 359.97438 * 5 4 3 7 7 F 1.35103 * 119.87558 * 180.02562 * 6 5 4 8 8 C 1.37985 * 120.24665 * 359.79450 * 6 5 4 9 9 C 1.39718 * 119.88037 * 0.44240 * 8 6 5 10 10 C 1.47536 * 120.17790 * 179.81452 * 9 8 6 11 11 O 1.21592 * 120.00173 * 179.71927 * 10 9 8 12 12 N 1.34777 * 120.00030 * 359.72209 * 10 9 8 13 13 C 1.46506 * 119.99873 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47035 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.46969 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46861 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00200 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99569 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00031 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47227 * 90.00066 * 20 18 16 22 22 H 1.48500 * 109.46628 * 209.99752 * 20 18 16 23 23 H 1.48493 * 109.47109 * 329.99411 * 20 18 16 24 24 H 1.09005 * 109.46726 * 59.99298 * 1 2 3 25 25 H 1.08995 * 109.46978 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47139 * 299.99675 * 1 2 3 27 27 H 1.07997 * 119.94419 * 359.96475 * 4 3 2 28 28 H 1.07996 * 119.82075 * 180.02562 * 5 4 3 29 29 H 1.07999 * 120.05749 * 180.24958 * 8 6 5 30 30 H 0.96999 * 120.00047 * 359.97438 * 12 10 9 31 31 H 1.09004 * 109.47073 * 299.99562 * 13 12 10 32 32 H 1.09000 * 109.47212 * 59.99645 * 13 12 10 33 33 H 1.09004 * 109.46930 * 299.99770 * 14 13 12 34 34 H 1.09004 * 109.47059 * 59.99372 * 14 13 12 35 35 H 1.08992 * 109.47534 * 299.99582 * 15 14 13 36 36 H 1.08996 * 109.47134 * 60.00388 * 15 14 13 37 37 H 0.97002 * 119.99797 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2923 2.3738 0.0006 5 6 1.9193 3.6038 0.0012 6 6 3.3042 3.6849 0.0016 7 9 3.9075 4.8938 0.0027 8 6 4.0679 2.5357 0.0058 9 6 3.4441 1.2855 0.0002 10 6 4.2542 0.0524 0.0005 11 8 3.7079 -1.0339 0.0009 12 7 5.5997 0.1301 0.0005 13 6 6.4041 -1.0944 0.0002 14 6 7.8897 -0.7286 -0.0004 15 6 8.7298 -2.0073 0.0000 16 6 10.1930 -1.6470 -0.0013 17 1 10.4937 -0.6097 -0.0026 18 6 11.1480 -2.6416 -0.0017 19 7 10.7818 -3.9047 -0.0006 20 14 12.9618 -2.1949 -0.0026 21 1 13.4431 -2.0766 1.3973 22 1 13.7320 -3.2539 -0.7029 23 1 13.1522 -0.8993 -0.7027 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2137 2.3186 0.0006 28 1 1.3285 4.5078 0.0021 29 1 5.1458 2.6024 0.0102 30 1 6.0355 0.9967 -0.0001 31 1 6.1742 -1.6803 0.8902 32 1 6.1741 -1.6800 -0.8898 33 1 8.1193 -0.1428 -0.8906 34 1 8.1200 -0.1426 0.8895 35 1 8.5002 -2.5926 0.8902 36 1 8.4996 -2.5935 -0.8897 37 1 11.4536 -4.6045 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171503554.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:56 Heat of formation + Delta-G solvation = -104.324850 kcal Electronic energy + Delta-G solvation = -20886.894993 eV Core-core repulsion = 17350.836430 eV Total energy + Delta-G solvation = -3536.058563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.10621 -40.75821 -38.96879 -37.39105 -35.36417 -33.36538 -32.12266 -30.84983 -30.07937 -27.62519 -26.75141 -24.49793 -23.04947 -22.27341 -20.75267 -20.26387 -18.66340 -17.78818 -17.29731 -16.40089 -16.23160 -16.08597 -15.67042 -15.25016 -15.17611 -15.06837 -14.78378 -14.43585 -13.82862 -13.57130 -13.26793 -13.12979 -12.64473 -12.28891 -12.20236 -11.81317 -11.68163 -11.53621 -11.25305 -10.89384 -10.71088 -10.58706 -9.88288 -9.85208 -9.60002 -9.37316 -9.10627 -8.77080 -8.42688 -8.35985 -6.00683 -4.03687 0.40778 0.82294 2.69566 2.92230 3.29386 3.31915 3.38317 3.41426 3.55627 3.89911 4.23588 4.28452 4.45467 4.63038 4.77819 4.84521 4.85915 5.11873 5.20370 5.27202 5.35139 5.53186 5.64899 5.68097 5.80044 5.80434 6.18101 6.25970 6.48881 6.61618 6.84194 7.00998 7.01560 7.64963 7.70747 7.77659 7.98223 8.37643 8.41736 9.03010 9.60436 11.10630 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024368 B = 0.003059 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.768780 B = 9150.347774 C =10268.064179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.275 6.275 3 C 0.175 3.825 4 C -0.193 4.193 5 C -0.089 4.089 6 C 0.052 3.948 7 F -0.138 7.138 8 C -0.082 4.082 9 C -0.139 4.139 10 C 0.553 3.447 11 O -0.517 6.517 12 N -0.723 5.723 13 C 0.118 3.882 14 C -0.122 4.122 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.056 0.944 25 H 0.105 0.895 26 H 0.057 0.943 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.396 0.604 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.926 15.332 0.005 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.185 6.185 3 C 0.127 3.873 4 C -0.212 4.212 5 C -0.108 4.108 6 C 0.032 3.968 7 F -0.116 7.116 8 C -0.101 4.101 9 C -0.143 4.143 10 C 0.339 3.661 11 O -0.394 6.394 12 N -0.375 5.375 13 C -0.005 4.005 14 C -0.160 4.160 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.075 0.925 25 H 0.123 0.877 26 H 0.075 0.925 27 H 0.162 0.838 28 H 0.160 0.840 29 H 0.165 0.835 30 H 0.230 0.770 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.133 14.159 0.001 26.274 hybrid contribution 1.126 1.041 0.009 1.534 sum -21.007 15.200 0.010 25.929 Atomic orbital electron populations 1.23214 0.78571 1.04660 1.01156 1.86440 1.20838 1.24831 1.86394 1.19064 0.90952 0.85176 0.92155 1.21094 1.00718 0.90985 1.08404 1.21080 0.92719 0.98828 0.98155 1.17340 0.90875 0.80501 1.08042 1.91521 1.83651 1.42059 1.94406 1.21205 1.00936 0.89967 0.98013 1.19319 0.91019 0.93764 1.10213 1.17832 0.82333 0.88179 0.77761 1.90836 1.71575 1.28326 1.48641 1.46135 1.05621 1.10871 1.74855 1.21673 0.91297 0.85298 1.02182 1.21903 0.91225 1.01918 1.00917 1.19027 0.93629 0.91029 0.97699 1.21210 0.91214 0.92736 1.50905 0.92637 1.25033 0.99142 0.95017 0.95288 1.69969 1.33680 0.99053 1.50584 0.86580 0.85131 0.78108 0.78089 1.20665 1.21218 1.19884 0.92495 0.87709 0.92489 0.83790 0.84024 0.83463 0.76963 0.91566 0.91574 0.92680 0.92687 0.96231 0.96228 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.27 -3.46 8.57 -40.69 -0.35 -3.81 16 3 C 0.18 2.04 6.70 -38.72 -0.26 1.78 16 4 C -0.19 -1.58 9.03 -39.48 -0.36 -1.94 16 5 C -0.09 -0.70 10.01 -39.46 -0.39 -1.10 16 6 C 0.05 0.50 7.28 -39.49 -0.29 0.22 16 7 F -0.14 -1.42 17.26 2.25 0.04 -1.38 16 8 C -0.08 -0.85 9.51 -39.12 -0.37 -1.22 16 9 C -0.14 -1.78 5.88 -104.85 -0.62 -2.39 16 10 C 0.55 8.86 7.76 -12.47 -0.10 8.77 16 11 O -0.52 -10.20 15.16 -16.61 -0.25 -10.45 16 12 N -0.72 -10.83 5.51 -61.34 -0.34 -11.17 16 13 C 0.12 2.11 5.67 -4.04 -0.02 2.09 16 14 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 15 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 16 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 25 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 27 H 0.14 0.75 6.29 -52.49 -0.33 0.42 16 28 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 29 H 0.15 1.28 6.40 -52.49 -0.34 0.94 16 30 H 0.40 4.77 6.50 -40.82 -0.27 4.50 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 322.73 15.07 4.86 4.86 Total: -1.00 -34.02 322.73 -7.08 -41.10 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.65 Total: -1.34 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -2.11 Total: -8.17 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.40 Total: -37.36 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.60 Total: -14.26 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.02 -7.08 -41.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171503554.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.227 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds