Wall clock time and date at job start Tue Mar 31 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99424 * 2 1 4 4 C 1.52997 * 109.47497 * 293.95608 * 3 2 1 5 5 C 1.50702 * 109.47171 * 180.02562 * 4 3 2 6 6 H 1.07995 * 120.00219 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99907 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99818 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99934 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47098 * 90.00214 * 9 7 5 11 11 H 1.48505 * 109.47172 * 209.99533 * 9 7 5 12 12 H 1.48498 * 109.47185 * 329.99919 * 9 7 5 13 13 C 1.46901 * 111.00164 * 123.95382 * 2 1 3 14 14 C 1.50693 * 109.47201 * 66.05032 * 13 2 1 15 15 C 1.38233 * 120.00207 * 89.99355 * 14 13 2 16 16 C 1.38234 * 120.00037 * 179.72405 * 15 14 13 17 17 C 1.38235 * 120.00220 * 0.28719 * 16 15 14 18 18 S 1.76202 * 120.00249 * 179.97438 * 17 16 15 19 19 C 1.81393 * 103.00197 * 89.99703 * 18 17 16 20 20 O 1.42103 * 102.99798 * 336.14171 * 18 17 16 21 21 C 1.38238 * 119.99712 * 359.97124 * 17 16 15 22 22 C 1.38233 * 120.00012 * 359.96176 * 21 17 16 23 23 H 1.09002 * 109.47230 * 296.03785 * 1 2 3 24 24 H 1.08995 * 109.47474 * 56.04760 * 1 2 3 25 25 H 1.09004 * 109.46478 * 176.04551 * 1 2 3 26 26 H 1.09001 * 109.47370 * 53.96001 * 3 2 1 27 27 H 1.09009 * 109.47154 * 173.95232 * 3 2 1 28 28 H 1.09002 * 109.46747 * 299.99866 * 4 3 2 29 29 H 1.08995 * 109.47109 * 59.99847 * 4 3 2 30 30 H 0.96997 * 120.00100 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47084 * 306.05037 * 13 2 1 32 32 H 1.09001 * 109.46701 * 186.04772 * 13 2 1 33 33 H 1.08002 * 120.00157 * 0.02562 * 15 14 13 34 34 H 1.07999 * 120.00009 * 180.25939 * 16 15 14 35 35 H 1.08997 * 109.47616 * 59.99698 * 19 18 17 36 36 H 1.09000 * 109.47499 * 180.02562 * 19 18 17 37 37 H 1.09008 * 109.47248 * 300.00312 * 19 18 17 38 38 H 1.08002 * 119.99672 * 179.97438 * 21 17 16 39 39 H 1.08004 * 119.99493 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0575 -1.3182 5 6 2.1718 3.4643 -1.3184 6 1 2.7197 3.8324 -0.4636 7 6 1.9658 4.2818 -2.4094 8 7 1.2981 3.8337 -3.4500 9 14 2.6351 6.0257 -2.4093 10 1 4.0068 6.0295 -2.9783 11 1 1.7554 6.8936 -3.2328 12 1 2.6753 6.5404 -1.0170 13 6 1.9955 -0.7660 1.1376 14 6 1.6371 -2.2204 0.9728 15 6 2.4941 -3.0715 0.3005 16 6 2.1680 -4.4069 0.1543 17 6 0.9821 -4.8899 0.6754 18 16 0.5661 -6.5919 0.4885 19 6 1.2885 -7.3534 1.9679 20 8 1.3130 -6.9796 -0.6566 21 6 0.1227 -4.0375 1.3431 22 6 0.4494 -2.7025 1.4904 23 1 -0.3634 0.4511 0.9234 24 1 -0.3634 0.5739 -0.8524 25 1 -0.3632 -1.0253 -0.0709 26 1 1.5610 1.9273 0.8310 27 1 3.0797 1.3445 0.1083 28 1 2.0657 1.5017 -2.1491 29 1 0.5471 2.0845 -1.4264 30 1 1.1528 4.4089 -4.2174 31 1 1.5611 -0.3873 2.0628 32 1 3.0798 -0.6610 1.1755 33 1 3.4207 -2.6943 -0.1064 34 1 2.8394 -5.0728 -0.3673 35 1 0.8448 -6.9091 2.8588 36 1 1.0901 -8.4251 1.9586 37 1 2.3653 -7.1836 1.9751 38 1 -0.8040 -4.4148 1.7498 39 1 -0.2219 -2.0367 2.0125 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178406973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:11 Heat of formation + Delta-G solvation = -13.313639 kcal Electronic energy + Delta-G solvation = -19042.746210 eV Core-core repulsion = 16076.847365 eV Total energy + Delta-G solvation = -2965.898845 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.49813 -36.95020 -35.90760 -33.26244 -31.83731 -31.04602 -29.39204 -29.03134 -27.04967 -25.32234 -23.08143 -22.74349 -21.03261 -19.92240 -18.25997 -16.77079 -16.48137 -15.68424 -15.44723 -15.11582 -14.90513 -14.52385 -14.38110 -14.20005 -13.86583 -13.48571 -13.35526 -12.85494 -12.77768 -12.49363 -12.15814 -12.10843 -11.77005 -11.50442 -11.23557 -11.05543 -10.98621 -10.87488 -10.57720 -10.36580 -9.89013 -9.47994 -9.18310 -9.04932 -8.97660 -8.56686 -8.34072 -7.78163 -6.00329 -4.03080 0.79772 1.34336 1.70365 2.49122 3.31427 3.37561 3.40295 3.50998 3.75727 4.41394 4.61378 4.74310 4.86448 4.87719 4.90012 4.96575 5.30144 5.34781 5.35436 5.57962 5.62868 5.65238 5.78374 5.85132 5.89887 5.99879 6.15581 6.20676 6.26488 6.39217 6.49405 6.59586 6.88383 6.92958 7.43998 7.50328 7.76306 7.87726 8.06761 8.41751 9.04159 9.60551 11.11039 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042810 B = 0.002768 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.889966 B =10113.383916 C =10281.925209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.536 5.536 3 C 0.063 3.937 4 C 0.028 3.972 5 C -0.523 4.523 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.083 3.917 14 C -0.028 4.028 15 C -0.114 4.114 16 C -0.054 4.054 17 C -0.468 4.468 18 S 1.330 4.670 19 C -0.499 4.499 20 O -0.859 6.859 21 C -0.047 4.047 22 C -0.132 4.132 23 H 0.018 0.982 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.021 0.979 27 H 0.061 0.939 28 H 0.024 0.976 29 H 0.018 0.982 30 H 0.261 0.739 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.134 0.866 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 -20.553 14.081 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.260 5.260 3 C -0.064 4.064 4 C -0.009 4.009 5 C -0.562 4.562 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.045 4.045 14 C -0.028 4.028 15 C -0.134 4.134 16 C -0.073 4.073 17 C -0.565 4.565 18 S 1.528 4.472 19 C -0.656 4.656 20 O -0.855 6.855 21 C -0.066 4.066 22 C -0.152 4.152 23 H 0.036 0.964 24 H 0.098 0.902 25 H 0.078 0.922 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.152 0.848 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.872 -21.164 12.741 25.391 hybrid contribution 2.395 1.958 0.841 3.206 sum -3.477 -19.205 13.581 23.778 Atomic orbital electron populations 1.22475 0.87876 1.01277 1.00981 1.62121 1.07914 1.15946 1.40011 1.22385 0.98555 0.84798 1.00615 1.19100 0.96971 0.94019 0.90835 1.21180 1.35232 0.97774 1.01990 0.92809 1.24998 0.95272 0.98498 0.95562 1.69971 1.40670 1.36473 1.06044 0.86589 0.78877 0.84542 0.77949 1.20634 1.21200 1.19944 1.21173 1.00771 0.89389 0.93137 1.20110 0.93570 0.95446 0.93723 1.21161 1.00452 0.93065 0.98703 1.21074 0.95144 0.95922 0.95169 1.27481 1.01832 1.17755 1.09442 1.69374 1.14422 0.80981 0.82446 1.27783 1.09850 1.09823 1.18111 1.93114 1.73552 1.78893 1.39923 1.20745 0.97721 0.92963 0.95205 1.21196 0.96787 0.95759 1.01462 0.96362 0.90183 0.92170 0.96071 0.92094 0.95724 0.96377 0.92959 0.94213 0.90057 0.85570 0.85832 0.87183 0.87855 0.90115 0.84849 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.93 60.07 0.54 0.91 16 2 N -0.54 -9.78 4.75 -244.37 -1.16 -10.94 16 3 C 0.06 1.33 4.90 -3.83 -0.02 1.31 16 4 C 0.03 0.74 4.90 -27.88 -0.14 0.60 16 5 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 6 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.08 1.22 5.12 -4.98 -0.03 1.19 16 14 C -0.03 -0.37 4.89 -104.63 -0.51 -0.89 16 15 C -0.11 -1.58 9.70 -39.58 -0.38 -1.97 16 16 C -0.05 -0.72 9.44 -39.58 -0.37 -1.09 16 17 C -0.47 -4.92 5.61 -39.58 -0.22 -5.14 16 18 S 1.33 10.12 14.19 -107.50 -1.53 8.59 16 19 C -0.50 -3.09 10.70 101.05 1.08 -2.01 16 20 O -0.86 -12.57 16.90 -35.23 -0.60 -13.17 16 21 C -0.05 -0.42 9.75 -39.58 -0.39 -0.81 16 22 C -0.13 -1.47 7.96 -39.58 -0.31 -1.78 16 23 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.08 1.52 6.30 -51.93 -0.33 1.19 16 25 H 0.06 0.90 6.15 -51.93 -0.32 0.58 16 26 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 27 H 0.06 1.26 7.93 -51.92 -0.41 0.85 16 28 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.02 0.50 6.47 -51.93 -0.34 0.16 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.04 0.54 8.07 -51.93 -0.42 0.12 16 32 H 0.08 1.16 7.87 -51.93 -0.41 0.75 16 33 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.12 1.72 7.45 -52.49 -0.39 1.33 16 35 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.13 1.20 8.02 -52.48 -0.42 0.78 16 LS Contribution 335.73 15.07 5.06 5.06 Total: -1.00 -36.79 335.73 -9.63 -46.42 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -5.96 Total: -3.07 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -1.17 Total: -23.29 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.43 Total: -37.26 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.60 Total: -13.17 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 10.12 SS G_CDS: -1.53 Total: 8.59 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.79 -9.63 -46.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178406973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.106 kcal (2) G-P(sol) polarization free energy of solvation -36.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds