Wall clock time and date at job start Tue Mar 31 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99424 * 2 1 4 4 C 1.52997 * 109.47497 * 293.95608 * 3 2 1 5 5 C 1.50702 * 109.47171 * 180.02562 * 4 3 2 6 6 H 1.07995 * 120.00219 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99907 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99818 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99934 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47098 * 90.00214 * 9 7 5 11 11 H 1.48505 * 109.47172 * 209.99533 * 9 7 5 12 12 H 1.48498 * 109.47185 * 329.99919 * 9 7 5 13 13 C 1.46901 * 111.00164 * 123.95382 * 2 1 3 14 14 C 1.50693 * 109.47201 * 66.05032 * 13 2 1 15 15 C 1.38233 * 120.00207 * 89.99355 * 14 13 2 16 16 C 1.38234 * 120.00037 * 179.72405 * 15 14 13 17 17 C 1.38235 * 120.00220 * 0.28719 * 16 15 14 18 18 S 1.76202 * 120.00249 * 179.97438 * 17 16 15 19 19 C 1.81393 * 103.00197 * 89.99703 * 18 17 16 20 20 O 1.42103 * 102.99798 * 336.14171 * 18 17 16 21 21 C 1.38238 * 119.99712 * 359.97124 * 17 16 15 22 22 C 1.38233 * 120.00012 * 359.96176 * 21 17 16 23 23 H 1.09002 * 109.47230 * 296.03785 * 1 2 3 24 24 H 1.08995 * 109.47474 * 56.04760 * 1 2 3 25 25 H 1.09004 * 109.46478 * 176.04551 * 1 2 3 26 26 H 1.09001 * 109.47370 * 53.96001 * 3 2 1 27 27 H 1.09009 * 109.47154 * 173.95232 * 3 2 1 28 28 H 1.09002 * 109.46747 * 299.99866 * 4 3 2 29 29 H 1.08995 * 109.47109 * 59.99847 * 4 3 2 30 30 H 0.96997 * 120.00100 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47084 * 306.05037 * 13 2 1 32 32 H 1.09001 * 109.46701 * 186.04772 * 13 2 1 33 33 H 1.08002 * 120.00157 * 0.02562 * 15 14 13 34 34 H 1.07999 * 120.00009 * 180.25939 * 16 15 14 35 35 H 1.08997 * 109.47616 * 59.99698 * 19 18 17 36 36 H 1.09000 * 109.47499 * 180.02562 * 19 18 17 37 37 H 1.09008 * 109.47248 * 300.00312 * 19 18 17 38 38 H 1.08002 * 119.99672 * 179.97438 * 21 17 16 39 39 H 1.08004 * 119.99493 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0575 -1.3182 5 6 2.1718 3.4643 -1.3184 6 1 2.7197 3.8324 -0.4636 7 6 1.9658 4.2818 -2.4094 8 7 1.2981 3.8337 -3.4500 9 14 2.6351 6.0257 -2.4093 10 1 4.0068 6.0295 -2.9783 11 1 1.7554 6.8936 -3.2328 12 1 2.6753 6.5404 -1.0170 13 6 1.9955 -0.7660 1.1376 14 6 1.6371 -2.2204 0.9728 15 6 2.4941 -3.0715 0.3005 16 6 2.1680 -4.4069 0.1543 17 6 0.9821 -4.8899 0.6754 18 16 0.5661 -6.5919 0.4885 19 6 1.2885 -7.3534 1.9679 20 8 1.3130 -6.9796 -0.6566 21 6 0.1227 -4.0375 1.3431 22 6 0.4494 -2.7025 1.4904 23 1 -0.3634 0.4511 0.9234 24 1 -0.3634 0.5739 -0.8524 25 1 -0.3632 -1.0253 -0.0709 26 1 1.5610 1.9273 0.8310 27 1 3.0797 1.3445 0.1083 28 1 2.0657 1.5017 -2.1491 29 1 0.5471 2.0845 -1.4264 30 1 1.1528 4.4089 -4.2174 31 1 1.5611 -0.3873 2.0628 32 1 3.0798 -0.6610 1.1755 33 1 3.4207 -2.6943 -0.1064 34 1 2.8394 -5.0728 -0.3673 35 1 0.8448 -6.9091 2.8588 36 1 1.0901 -8.4251 1.9586 37 1 2.3653 -7.1836 1.9751 38 1 -0.8040 -4.4148 1.7498 39 1 -0.2219 -2.0367 2.0125 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178406973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:11 Heat of formation + Delta-G solvation = -39.769528 kcal Electronic energy + Delta-G solvation = -19043.893424 eV Core-core repulsion = 16076.847365 eV Total energy + Delta-G solvation = -2967.046058 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.48192 -38.33681 -36.86290 -35.26971 -33.17774 -31.94950 -31.10140 -29.61771 -28.28614 -27.08387 -24.65950 -23.67590 -22.23821 -21.57400 -19.03947 -18.61764 -17.57768 -16.75012 -16.66585 -16.46513 -16.27596 -15.77477 -15.75017 -15.21860 -14.68395 -14.49630 -14.37591 -14.29052 -14.15859 -13.62682 -13.39010 -13.27938 -12.99292 -12.89642 -12.74486 -12.63877 -12.54037 -12.26424 -11.97632 -11.83959 -11.42151 -11.29345 -11.19679 -10.56083 -10.06866 -9.88127 -9.35060 -9.17140 -8.21494 -6.33234 -0.06715 0.44183 1.00324 1.39026 1.40827 1.51748 1.81988 2.38667 2.60372 3.01339 3.11868 3.28272 3.74867 3.86974 4.08497 4.21969 4.31367 4.35523 4.40639 4.47533 4.53633 4.56991 4.66520 4.71337 4.79010 4.89745 5.00459 5.08502 5.09723 5.19350 5.28988 5.31072 5.43887 5.60551 5.65234 5.76266 6.00193 6.07259 6.23588 6.30504 6.84301 7.36001 8.90773 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042810 B = 0.002768 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.889966 B =10113.383916 C =10281.925209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.555 5.555 3 C 0.080 3.920 4 C 0.036 3.964 5 C -0.545 4.545 6 H 0.061 0.939 7 C 0.000 4.000 8 N -0.933 5.933 9 Si 0.968 3.032 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.261 1.261 13 C 0.088 3.912 14 C -0.046 4.046 15 C -0.136 4.136 16 C -0.081 4.081 17 C -0.472 4.472 18 S 1.400 4.600 19 C -0.495 4.495 20 O -0.933 6.933 21 C -0.031 4.031 22 C -0.134 4.134 23 H 0.036 0.964 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.028 0.972 27 H 0.061 0.939 28 H -0.014 1.014 29 H -0.003 1.003 30 H 0.264 0.736 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.144 0.856 36 H 0.121 0.879 37 H 0.058 0.942 38 H 0.193 0.807 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.012 -21.021 16.864 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.280 5.280 3 C -0.047 4.047 4 C -0.002 4.002 5 C -0.583 4.583 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.573 5.573 9 Si 0.792 3.208 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.185 1.185 13 C -0.039 4.039 14 C -0.047 4.047 15 C -0.155 4.155 16 C -0.100 4.100 17 C -0.568 4.568 18 S 1.598 4.402 19 C -0.653 4.653 20 O -0.929 6.929 21 C -0.050 4.050 22 C -0.153 4.153 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.100 0.900 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.005 0.995 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.130 0.870 34 H 0.121 0.879 35 H 0.162 0.838 36 H 0.140 0.860 37 H 0.077 0.923 38 H 0.210 0.790 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.388 -21.627 15.528 27.630 hybrid contribution 2.827 1.946 0.048 3.433 sum -4.560 -19.680 15.575 25.509 Atomic orbital electron populations 1.22413 0.86966 1.02213 1.00434 1.61971 1.08940 1.14333 1.42708 1.21991 0.98671 0.86395 0.97651 1.18927 0.95184 0.93649 0.92397 1.21629 1.35350 0.98883 1.02433 0.92033 1.25995 0.95404 1.03393 0.95032 1.70117 1.41962 1.38350 1.06832 0.85409 0.78184 0.78602 0.78607 1.19922 1.20658 1.18504 1.21152 1.00597 0.89839 0.92321 1.20054 0.94977 0.94420 0.95239 1.21145 1.00676 0.93765 0.99944 1.21056 0.96655 0.95552 0.96767 1.27909 1.00737 1.19692 1.08484 1.68458 1.12510 0.78332 0.80859 1.27749 1.08474 1.11180 1.17946 1.92988 1.75305 1.79966 1.44598 1.21392 0.98875 0.91693 0.93039 1.21561 0.95827 0.97199 1.00759 0.94529 0.93393 0.90002 0.95407 0.92046 0.99548 0.98437 0.92750 0.92307 0.90452 0.87014 0.87901 0.83786 0.86003 0.92275 0.78982 0.83337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 8.93 127.69 1.14 2.05 16 2 N -0.56 -20.36 4.75 -927.04 -4.41 -24.77 16 3 C 0.08 3.43 4.90 86.30 0.42 3.85 16 4 C 0.04 1.96 4.90 29.85 0.15 2.10 16 5 C -0.54 -31.50 9.11 25.60 0.23 -31.27 16 6 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 7 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 8 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 9 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 13 C 0.09 2.51 5.12 85.55 0.44 2.95 16 14 C -0.05 -1.20 4.89 -19.87 -0.10 -1.30 16 15 C -0.14 -3.91 9.70 22.27 0.22 -3.70 16 16 C -0.08 -2.23 9.44 22.27 0.21 -2.02 16 17 C -0.47 -9.04 5.61 22.27 0.12 -8.92 16 18 S 1.40 18.38 14.19 -56.49 -0.80 17.58 16 19 C -0.50 -4.55 10.70 113.37 1.21 -3.33 16 20 O -0.93 -27.47 16.90 -148.98 -2.52 -29.99 16 21 C -0.03 -0.43 9.75 22.27 0.22 -0.21 16 22 C -0.13 -2.53 7.96 22.27 0.18 -2.35 16 23 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.05 1.87 6.30 -2.39 -0.02 1.86 16 25 H 0.08 2.30 6.15 -2.38 -0.01 2.29 16 26 H 0.03 1.14 8.12 -2.39 -0.02 1.12 16 27 H 0.06 2.58 7.93 -2.38 -0.02 2.56 16 28 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 29 H 0.00 -0.15 6.47 -2.39 -0.02 -0.17 16 30 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 31 H 0.06 1.46 8.07 -2.39 -0.02 1.44 16 32 H 0.08 2.22 7.87 -2.39 -0.02 2.20 16 33 H 0.11 3.35 8.06 -2.91 -0.02 3.32 16 34 H 0.10 3.15 7.45 -2.91 -0.02 3.13 16 35 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.19 0.34 8.06 -2.91 -0.02 0.31 16 39 H 0.15 2.12 8.02 -2.91 -0.02 2.10 16 Total: -1.00 -84.31 335.73 0.51 -83.81 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.02 Total: 6.01 kcal Atomic # 6 Polarization: -46.61 SS G_CDS: 4.90 Total: -41.70 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -4.12 Total: -82.45 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -2.52 Total: -29.99 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 18.38 SS G_CDS: -0.80 Total: 17.58 kcal Total: -84.31 0.51 -83.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178406973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.037 kcal (2) G-P(sol) polarization free energy of solvation -84.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds