Wall clock time and date at job start Tue Mar 31 2020 05:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.39024 * 120.00075 * 179.97438 * 2 1 3 5 5 C 1.39320 * 119.90066 * 0.02562 * 4 2 1 6 6 C 1.36504 * 120.27584 * 179.97438 * 5 4 2 7 7 C 1.39923 * 120.06993 * 359.97438 * 6 5 4 8 8 C 1.47223 * 120.09512 * 180.02562 * 7 6 5 9 9 O 1.21544 * 119.99901 * 179.97438 * 8 7 6 10 10 O 1.34774 * 120.00316 * 359.97438 * 8 7 6 11 11 C 1.45199 * 117.00406 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47438 * 180.02562 * 11 10 8 13 13 C 1.50699 * 109.47302 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99911 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00209 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99593 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00266 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46955 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46987 * 120.00160 * 17 15 13 20 20 H 1.48498 * 109.47137 * 240.00662 * 17 15 13 21 21 C 1.40133 * 119.80897 * 0.02562 * 7 6 5 22 22 F 1.35090 * 120.13845 * 180.02562 * 21 7 6 23 23 C 1.37987 * 119.72077 * 359.72804 * 21 7 6 24 24 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 25 25 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 26 26 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 27 27 H 1.09000 * 109.47202 * 89.99334 * 3 2 1 28 28 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 29 29 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 30 30 H 1.07997 * 119.86453 * 0.02562 * 5 4 2 31 31 H 1.07995 * 119.96667 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.46915 * 300.00489 * 11 10 8 33 33 H 1.08998 * 109.46921 * 60.00414 * 11 10 8 34 34 H 1.09000 * 109.46976 * 299.99850 * 12 11 10 35 35 H 1.08998 * 109.47218 * 59.99994 * 12 11 10 36 36 H 0.97001 * 119.99570 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.03425 * 180.26757 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2040 0.0005 5 6 1.4614 -2.4093 0.0005 6 6 2.1362 -3.5959 0.0005 7 6 3.5354 -3.6068 0.0000 8 6 4.2637 -4.8862 -0.0006 9 8 5.4792 -4.8936 -0.0015 10 8 3.5828 -6.0493 -0.0001 11 6 4.3662 -7.2718 -0.0001 12 6 3.4269 -8.4795 -0.0001 13 6 4.2399 -9.7484 0.0005 14 1 5.3187 -9.6984 0.0004 15 6 3.6065 -10.9731 0.0011 16 7 2.2928 -11.0339 0.0007 17 14 4.6143 -12.5459 0.0011 18 1 6.0602 -12.2072 0.0010 19 1 4.2925 -13.3399 1.2140 20 1 4.2916 -13.3406 -1.2110 21 6 4.2414 -2.3963 0.0000 22 9 5.5923 -2.3990 -0.0010 23 6 3.5510 -1.2016 -0.0052 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 -0.8900 -0.5138 26 1 -0.3633 0.8900 -0.5139 27 1 2.3791 1.5834 1.0277 28 1 3.1499 1.1384 -0.5137 29 1 1.6085 2.0284 -0.5138 30 1 0.3815 -2.4049 -0.0003 31 1 1.5896 -4.5273 0.0010 32 1 4.9946 -7.3007 -0.8903 33 1 4.9951 -7.3004 0.8897 34 1 2.7982 -8.4509 0.8899 35 1 2.7982 -8.4508 -0.8901 36 1 1.8472 -11.8955 0.0008 37 1 4.0900 -0.2657 -0.0095 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178529720.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:46 Heat of formation + Delta-G solvation = -100.590856 kcal Electronic energy + Delta-G solvation = -21023.150393 eV Core-core repulsion = 17487.253748 eV Total energy + Delta-G solvation = -3535.896645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.86902 -40.15168 -39.29761 -36.45764 -35.78443 -33.29520 -31.39881 -30.75001 -29.93284 -28.50270 -26.12515 -24.84710 -22.62257 -22.44192 -20.95591 -20.36587 -18.21581 -17.40903 -16.76922 -16.31906 -16.04049 -15.95568 -15.67331 -15.56645 -15.21301 -14.88112 -14.52751 -14.29100 -13.49151 -13.19887 -13.04983 -12.85956 -12.76201 -12.46274 -12.34736 -12.32883 -12.16822 -11.31268 -11.18635 -10.97191 -10.71398 -10.63955 -10.14149 -10.10766 -9.55911 -9.55552 -9.24034 -9.04161 -8.41106 -7.76416 -6.07352 -4.10955 0.76266 1.13026 2.58647 2.82063 3.25312 3.30202 3.37813 3.44035 3.70417 4.12501 4.42481 4.44986 4.52440 4.77084 4.81185 4.90791 5.07549 5.10529 5.16914 5.24453 5.27683 5.29474 5.32358 5.69287 5.90587 6.02390 6.15490 6.18222 6.21265 6.46807 6.70985 6.72497 6.96720 7.07937 7.61274 7.67514 7.91357 8.25704 8.36660 8.94913 9.53232 11.04317 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033149 B = 0.003071 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.477021 B = 9116.000557 C = 9929.426325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.626 5.626 3 C 0.086 3.914 4 C 0.270 3.730 5 C -0.222 4.222 6 C 0.017 3.983 7 C -0.219 4.219 8 C 0.504 3.496 9 O -0.513 6.513 10 O -0.354 6.354 11 C 0.077 3.923 12 C 0.025 3.975 13 C -0.524 4.524 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.899 3.101 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.212 3.788 22 F -0.114 7.114 23 C -0.257 4.257 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.136 0.864 31 H 0.151 0.849 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.262 0.738 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 25.832 -0.179 26.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.334 5.334 3 C -0.057 4.057 4 C 0.164 3.836 5 C -0.244 4.244 6 C -0.002 4.002 7 C -0.223 4.223 8 C 0.349 3.651 9 O -0.404 6.404 10 O -0.271 6.271 11 C 0.004 3.996 12 C -0.012 4.012 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C 0.192 3.808 22 F -0.092 7.092 23 C -0.281 4.281 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.154 0.846 31 H 0.169 0.831 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.328 25.853 -0.182 26.397 hybrid contribution 0.827 -0.875 0.018 1.204 sum -4.501 24.978 -0.164 25.381 Atomic orbital electron populations 1.21789 0.78657 1.03252 1.01845 1.46338 1.05644 1.03290 1.78177 1.21777 0.97549 0.84575 1.01765 1.17692 0.90248 0.86137 0.89485 1.20475 1.00530 0.90404 1.13028 1.20943 0.91743 0.98971 0.88516 1.19083 0.94312 0.89977 1.18900 1.20704 0.85946 0.84924 0.73557 1.90850 1.14652 1.88468 1.46409 1.86547 1.42286 1.15092 1.83137 1.23629 0.95172 0.79787 1.01003 1.19171 0.94747 0.88484 0.98838 1.21036 0.93210 0.90180 1.51799 0.92192 1.24982 0.94994 0.99293 0.94932 1.69987 1.07607 1.25278 1.50079 0.86421 0.80389 0.82892 0.77658 1.19582 1.20857 1.20853 1.17324 0.77018 0.92373 0.94129 1.91588 1.28029 1.97221 1.92406 1.20402 0.92776 0.97360 1.17519 0.92718 0.90604 0.91141 0.92783 0.90884 0.91082 0.84590 0.83108 0.92319 0.92313 0.95337 0.95336 0.92818 0.84094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 10.22 59.85 0.61 1.03 16 2 N -0.63 -4.54 3.39 -187.57 -0.64 -5.18 16 3 C 0.09 0.43 10.22 59.85 0.61 1.04 16 4 C 0.27 2.69 6.55 -83.88 -0.55 2.14 16 5 C -0.22 -2.27 9.13 -39.81 -0.36 -2.63 16 6 C 0.02 0.22 9.55 -39.58 -0.38 -0.15 16 7 C -0.22 -3.48 5.88 -104.91 -0.62 -4.10 16 8 C 0.50 10.06 7.88 34.38 0.27 10.33 16 9 O -0.51 -11.57 15.12 -19.30 -0.29 -11.87 16 10 O -0.35 -7.50 9.46 -40.69 -0.38 -7.89 16 11 C 0.08 1.79 5.42 37.16 0.20 1.99 16 12 C 0.02 0.66 5.35 -27.88 -0.15 0.51 16 13 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 14 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 17 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 C 0.21 3.11 7.28 -38.96 -0.28 2.83 16 22 F -0.11 -1.90 15.54 2.25 0.04 -1.87 16 23 C -0.26 -2.87 9.17 -39.36 -0.36 -3.23 16 24 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.08 0.35 6.17 -51.93 -0.32 0.03 16 26 H 0.07 0.22 7.89 -51.93 -0.41 -0.19 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.36 6.16 -51.93 -0.32 0.04 16 29 H 0.07 0.23 7.89 -51.93 -0.41 -0.18 16 30 H 0.14 1.04 6.10 -52.49 -0.32 0.72 16 31 H 0.15 1.88 7.60 -52.49 -0.40 1.48 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.14 1.26 6.11 -52.48 -0.32 0.94 16 LS Contribution 321.69 15.07 4.85 4.85 Total: -1.00 -33.71 321.69 -6.71 -40.42 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: -4.58 Total: -5.33 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.42 Total: -3.95 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.10 Total: -31.04 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.68 Total: -19.75 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.71 -6.71 -40.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178529720.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.175 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds