Wall clock time and date at job start Tue Mar 31 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47105 * 2 1 4 4 N 1.46898 * 109.47047 * 239.99674 * 2 1 3 5 5 C 1.46895 * 110.99826 * 60.00281 * 4 2 1 6 6 C 1.53006 * 109.47154 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47130 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.46719 * 180.02562 * 7 6 5 9 9 H 1.07996 * 120.00528 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99988 * 179.97438 * 8 7 6 11 11 N 1.31522 * 119.99996 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00323 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47266 * 59.99964 * 12 10 8 14 14 H 1.48505 * 109.47415 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47074 * 299.99958 * 12 10 8 16 16 C 1.50706 * 109.46767 * 119.99661 * 2 1 3 17 17 C 1.38261 * 119.98955 * 119.97996 * 16 2 1 18 18 C 1.38226 * 120.02556 * 179.97438 * 17 16 2 19 19 C 1.38232 * 120.01242 * 0.03800 * 18 17 16 20 20 C 1.38329 * 119.98743 * 359.97438 * 19 18 17 21 21 Cl 1.73605 * 120.01537 * 180.02562 * 20 19 18 22 22 C 1.38191 * 119.99582 * 300.00305 * 16 2 1 23 23 H 1.08998 * 109.46879 * 300.00124 * 1 2 3 24 24 H 1.09001 * 109.46754 * 60.00396 * 1 2 3 25 25 H 1.08995 * 109.46644 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46888 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47249 * 299.99944 * 3 2 1 28 28 H 1.09007 * 109.46982 * 59.99721 * 3 2 1 29 29 H 1.00902 * 110.99560 * 183.95383 * 4 2 1 30 30 H 1.08993 * 109.47631 * 299.99649 * 5 4 2 31 31 H 1.09000 * 109.47250 * 60.00104 * 5 4 2 32 32 H 1.09001 * 109.46648 * 300.00165 * 6 5 4 33 33 H 1.08991 * 109.46868 * 59.99796 * 6 5 4 34 34 H 1.09001 * 109.47230 * 299.99491 * 7 6 5 35 35 H 1.08991 * 109.47672 * 59.99970 * 7 6 5 36 36 H 0.96996 * 120.00426 * 180.02562 * 11 10 8 37 37 H 1.07998 * 119.98691 * 0.02562 * 17 16 2 38 38 H 1.07996 * 119.99103 * 180.02562 * 18 17 16 39 39 H 1.08002 * 120.00491 * 180.02562 * 19 18 17 40 40 H 1.08005 * 120.00408 * 0.27624 * 22 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 1.5488 -0.0265 -2.4210 6 6 2.0783 -0.7744 -3.6463 7 6 1.5883 -0.0802 -4.9186 8 6 2.1094 -0.8173 -6.1253 9 1 2.7285 -1.6929 -5.9976 10 6 1.7958 -0.3738 -7.3926 11 7 1.0414 0.6923 -7.5483 12 14 2.4423 -1.2869 -8.8884 13 1 1.9476 -2.6868 -8.8658 14 1 1.9655 -0.6140 -10.1235 15 1 3.9271 -1.2861 -8.8653 16 6 2.0323 -0.7104 1.2306 17 6 2.8268 -1.8348 1.1036 18 6 3.2884 -2.4866 2.2317 19 6 2.9551 -2.0150 3.4877 20 6 2.1600 -0.8903 3.6154 21 17 1.7416 -0.2970 5.1923 22 6 1.6983 -0.2381 2.4856 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0276 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6768 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.0263 -0.7626 -1.1908 30 1 0.4590 -0.0266 -2.4379 31 1 1.9123 1.0010 -2.4378 32 1 3.1682 -0.7738 -3.6292 33 1 1.7152 -1.8019 -3.6296 34 1 0.4984 -0.0804 -4.9359 35 1 1.9517 0.9472 -4.9350 36 1 0.8204 1.0042 -8.4397 37 1 3.0876 -2.2034 0.1225 38 1 3.9093 -3.3646 2.1319 39 1 3.3161 -2.5242 4.3691 40 1 1.0737 0.6374 2.5846 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179604052.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:54 Heat of formation + Delta-G solvation = -0.610812 kcal Electronic energy + Delta-G solvation = -19228.339022 eV Core-core repulsion = 16260.947306 eV Total energy + Delta-G solvation = -2967.391715 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.11891 -37.67668 -36.50261 -34.22994 -32.45545 -31.05624 -30.29940 -29.25448 -27.35395 -26.13337 -23.75388 -22.62600 -22.12286 -20.19839 -19.42680 -17.43707 -16.27914 -15.86239 -15.53785 -15.21342 -14.59560 -14.47918 -14.26135 -14.08481 -13.81513 -13.40677 -13.04323 -12.50838 -12.45976 -12.18047 -11.96225 -11.71715 -11.69642 -11.51240 -11.34032 -11.18750 -11.14347 -10.80547 -10.74407 -10.52769 -10.42401 -9.68324 -9.33904 -9.09360 -9.06597 -8.83001 -8.33704 -8.21142 -5.99110 -4.01232 1.01079 1.07970 1.90892 3.33932 3.38173 3.40780 3.45636 4.18781 4.43239 4.47989 4.65778 4.87555 4.97964 5.07145 5.15642 5.21930 5.36649 5.47701 5.52671 5.61251 5.65772 5.68338 5.85312 5.89295 5.91052 5.99348 6.08965 6.21961 6.27534 6.34308 6.37255 6.63368 6.71561 6.79689 7.13300 7.31197 7.55825 7.68655 7.83861 8.01246 8.44408 9.05828 9.62706 11.12316 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042196 B = 0.002748 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.403199 B =10185.534247 C =10645.239925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.148 3.852 3 C -0.180 4.180 4 N -0.679 5.679 5 C 0.054 3.946 6 C -0.107 4.107 7 C 0.023 3.977 8 C -0.519 4.519 9 H 0.054 0.946 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C -0.052 4.052 17 C -0.098 4.098 18 C -0.108 4.108 19 C -0.119 4.119 20 C -0.036 4.036 21 Cl -0.079 7.079 22 C -0.107 4.107 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.338 0.662 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.016 0.984 35 H 0.013 0.987 36 H 0.261 0.739 37 H 0.142 0.858 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.298 -1.990 23.730 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.057 3.943 3 C -0.239 4.239 4 N -0.310 5.310 5 C -0.074 4.074 6 C -0.145 4.145 7 C -0.015 4.015 8 C -0.558 4.558 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.053 4.053 17 C -0.117 4.117 18 C -0.127 4.127 19 C -0.138 4.138 20 C -0.062 4.062 21 Cl -0.050 7.050 22 C -0.126 4.126 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.157 0.843 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.160 0.840 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.663 -2.287 23.723 23.891 hybrid contribution 0.851 0.436 -0.709 1.191 sum 2.515 -1.851 23.014 23.225 Atomic orbital electron populations 1.21905 0.92742 1.02877 1.01948 1.19744 0.95727 0.90832 0.88043 1.22578 1.01452 0.97001 1.02822 1.60824 1.15929 1.53158 1.01066 1.22244 1.00590 0.95806 0.88772 1.21621 0.99249 0.99613 0.93981 1.19049 0.96483 0.95526 0.90415 1.21219 1.31337 1.12178 0.91022 0.92748 1.25029 0.95252 0.95113 0.99118 1.69955 1.37324 1.23763 1.22599 0.86659 0.79247 0.79969 0.82130 1.20225 1.21322 1.20276 1.19797 0.96609 0.95532 0.93376 1.21319 0.96136 0.94504 0.99702 1.21167 0.99834 1.00039 0.91624 1.21026 0.98600 0.95605 0.98544 1.20835 1.01849 0.97549 0.85979 1.98363 1.92593 1.88057 1.25983 1.20828 1.00805 1.00457 0.90485 0.92497 0.91486 0.91597 0.92508 0.91183 0.92166 0.84333 0.90998 0.95171 0.93738 0.92584 0.96611 0.96854 0.92980 0.83993 0.85122 0.85319 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.05 37.16 0.30 -1.29 16 2 C 0.15 1.73 0.79 -132.75 -0.11 1.62 16 3 C -0.18 -2.00 8.04 37.16 0.30 -1.70 16 4 N -0.68 -9.12 5.10 -101.14 -0.52 -9.64 16 5 C 0.05 0.88 4.90 -3.82 -0.02 0.86 16 6 C -0.11 -2.14 5.41 -26.73 -0.14 -2.29 16 7 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 8 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 9 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 12 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 C -0.05 -0.58 4.77 -104.63 -0.50 -1.08 16 17 C -0.10 -1.04 9.14 -39.58 -0.36 -1.40 16 18 C -0.11 -1.00 10.05 -39.59 -0.40 -1.40 16 19 C -0.12 -1.11 9.83 -39.55 -0.39 -1.49 16 20 C -0.04 -0.36 6.32 -39.50 -0.25 -0.61 16 21 Cl -0.08 -0.75 28.96 -51.86 -1.50 -2.25 16 22 C -0.11 -1.11 8.50 -39.55 -0.34 -1.44 16 23 H 0.06 0.56 7.38 -51.93 -0.38 0.18 16 24 H 0.07 0.82 6.40 -51.93 -0.33 0.49 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.84 6.40 -51.93 -0.33 0.51 16 28 H 0.06 0.59 7.39 -51.92 -0.38 0.20 16 29 H 0.34 4.29 7.55 -39.29 -0.30 3.99 16 30 H 0.07 1.21 6.30 -51.93 -0.33 0.88 16 31 H 0.03 0.49 6.30 -51.93 -0.33 0.17 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.14 1.49 6.40 -52.49 -0.34 1.16 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.13 1.23 7.10 -52.48 -0.37 0.85 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -29.61 335.82 -9.71 -39.32 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.02 Total: 0.40 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -2.45 Total: -23.29 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.22 Total: -35.93 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.61 -9.71 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179604052.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.710 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds