Wall clock time and date at job start Tue Mar 31 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46890 * 2 1 4 4 C 1.53001 * 109.47259 * 240.00229 * 2 1 3 5 5 C 1.52995 * 109.47282 * 120.00155 * 2 1 3 6 6 C 1.52998 * 109.47343 * 53.44112 * 5 2 1 7 7 H 1.09007 * 109.46785 * 305.91263 * 6 5 2 8 8 N 1.46501 * 109.47138 * 185.91569 * 6 5 2 9 9 C 1.36936 * 119.99929 * 82.45126 * 8 6 5 10 10 H 1.07993 * 120.00218 * 354.66665 * 9 8 6 11 11 C 1.38817 * 119.99956 * 174.66940 * 9 8 6 12 12 N 1.31627 * 119.99817 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00260 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47148 * 89.99588 * 13 11 9 15 15 H 1.48502 * 109.47277 * 209.99945 * 13 11 9 16 16 H 1.48495 * 109.47066 * 329.99823 * 13 11 9 17 17 C 1.50700 * 109.47327 * 65.91313 * 6 5 2 18 18 C 1.38240 * 119.98737 * 236.22228 * 17 6 5 19 19 C 1.38214 * 120.01150 * 180.02562 * 18 17 6 20 20 C 1.38351 * 119.98781 * 0.25840 * 19 18 17 21 21 Cl 1.73601 * 120.01401 * 179.69750 * 20 19 18 22 22 C 1.38349 * 119.97254 * 359.46528 * 20 19 18 23 23 C 1.38215 * 119.98799 * 0.55553 * 22 20 19 24 24 H 1.09000 * 109.47042 * 292.92468 * 1 2 3 25 25 H 1.08994 * 109.47273 * 52.92352 * 1 2 3 26 26 H 1.09002 * 109.46753 * 172.92910 * 1 2 3 27 27 H 1.08998 * 109.46702 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47244 * 299.99774 * 3 2 1 29 29 H 1.09002 * 109.46893 * 60.00452 * 3 2 1 30 30 H 1.09005 * 109.46643 * 316.26727 * 4 2 1 31 31 H 1.08995 * 109.47275 * 76.26485 * 4 2 1 32 32 H 1.08994 * 109.47113 * 196.26975 * 4 2 1 33 33 H 1.09002 * 109.47114 * 293.44188 * 5 2 1 34 34 H 1.09003 * 109.47357 * 173.44495 * 5 2 1 35 35 H 0.97001 * 119.99883 * 262.44343 * 8 6 5 36 36 H 0.96993 * 119.99941 * 180.02562 * 12 11 9 37 37 H 1.08004 * 119.99403 * 359.97438 * 18 17 6 38 38 H 1.08000 * 120.00296 * 179.97438 * 19 18 17 39 39 H 1.07998 * 120.01084 * 180.25370 * 22 20 19 40 40 H 1.07995 * 119.99743 * 179.72840 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.4000 -2.1083 1.3343 7 1 0.3153 -2.0116 1.2853 8 7 1.7769 -2.7432 2.5996 9 6 1.0900 -2.4456 3.7463 10 1 0.3281 -1.6803 3.7361 11 6 1.3731 -3.1276 4.9218 12 7 2.3014 -4.0607 4.9340 13 14 0.4367 -2.7212 6.4861 14 1 -0.7745 -3.5759 6.5741 15 1 1.3065 -2.9725 7.6632 16 1 0.0336 -1.2922 6.4646 17 6 1.8813 -2.9551 0.1844 18 6 0.9682 -3.5331 -0.6777 19 6 1.4091 -4.3102 -1.7322 20 6 2.7643 -4.5141 -1.9217 21 17 3.3185 -5.4966 -3.2413 22 6 3.6779 -3.9308 -1.0619 23 6 3.2358 -3.1542 -0.0075 24 1 -0.3633 0.4003 0.9465 25 1 -0.3633 0.6195 -0.8198 26 1 -0.3633 -1.0199 -0.1265 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.4610 -1.6315 -1.4051 31 1 1.9311 -0.0686 -2.1154 32 1 3.0912 -0.9774 -1.1172 33 1 1.7757 -0.1442 2.1353 34 1 3.1237 -0.8240 1.1925 35 1 2.5130 -3.3745 2.6252 36 1 2.4990 -4.5375 5.7552 37 1 -0.0899 -3.3779 -0.5268 38 1 0.6956 -4.7620 -2.4054 39 1 4.7361 -4.0862 -1.2117 40 1 3.9487 -2.7023 0.6663 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179706674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:13 Heat of formation + Delta-G solvation = 13.077377 kcal Electronic energy + Delta-G solvation = -20531.177644 eV Core-core repulsion = 17564.379494 eV Total energy + Delta-G solvation = -2966.798151 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.92685 -37.40118 -36.15520 -34.52334 -31.95012 -30.87223 -29.73883 -27.49574 -26.99677 -26.77783 -24.18635 -22.89134 -22.26019 -20.16435 -18.23490 -17.46103 -16.73598 -15.39940 -15.16168 -14.60897 -14.26552 -14.20316 -13.95565 -13.55100 -13.31253 -13.19693 -12.92440 -12.59633 -12.44546 -11.91038 -11.70205 -11.54923 -11.35714 -11.21867 -11.09014 -10.98713 -10.83690 -10.63867 -10.54136 -10.30500 -10.20347 -10.14058 -9.90000 -9.70512 -8.91138 -8.70305 -8.12547 -6.99442 -5.80854 -3.10055 1.43980 1.55832 2.30161 3.40998 3.46394 3.47916 3.91285 4.56290 4.98219 5.09982 5.12034 5.16631 5.19494 5.29023 5.53895 5.60307 5.65469 5.79552 5.83593 5.84673 5.92642 6.02724 6.03410 6.08049 6.14625 6.20913 6.28603 6.32893 6.35133 6.46189 6.50245 6.52071 6.63100 6.69215 6.80170 6.93072 7.08520 7.15828 7.66926 8.37363 9.48621 10.04059 10.39567 11.41278 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.005735 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.536292 B = 4881.374564 C = 6220.495097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.138 4.138 4 C -0.153 4.153 5 C -0.122 4.122 6 C 0.208 3.792 7 H 0.060 0.940 8 N -0.718 5.718 9 C -0.240 4.240 10 H 0.071 0.929 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.289 1.289 15 H -0.292 1.292 16 H -0.281 1.281 17 C -0.042 4.042 18 C -0.106 4.106 19 C -0.113 4.113 20 C -0.046 4.046 21 Cl -0.089 7.089 22 C -0.109 4.109 23 C -0.097 4.097 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.000 4.253 -14.983 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 C -0.195 4.195 4 C -0.210 4.210 5 C -0.163 4.163 6 C 0.099 3.901 7 H 0.078 0.922 8 N -0.359 5.359 9 C -0.371 4.371 10 H 0.089 0.911 11 C -0.206 4.206 12 N -0.577 5.577 13 Si 0.736 3.264 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.207 1.207 17 C -0.044 4.044 18 C -0.125 4.125 19 C -0.132 4.132 20 C -0.073 4.073 21 Cl -0.061 7.061 22 C -0.128 4.128 23 C -0.116 4.116 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.073 4.205 -14.925 15.507 hybrid contribution -0.119 -0.165 0.828 0.852 sum -0.191 4.041 -14.098 14.666 Atomic orbital electron populations 1.21926 0.95167 1.01579 1.01092 1.20526 0.95362 0.94875 0.96095 1.21868 1.00689 0.96011 1.00947 1.22410 1.01378 1.00865 0.96334 1.22410 1.00126 0.97741 0.96004 1.19389 0.97412 0.89479 0.83820 0.92243 1.42459 1.39303 1.52052 1.02049 1.19206 1.15242 1.15477 0.87143 0.91088 1.24764 0.99343 0.98413 0.98124 1.69670 1.34125 1.26725 1.27201 0.86217 0.79098 0.77752 0.83285 1.21683 1.21788 1.20698 1.20423 0.93148 0.95579 0.95202 1.20969 0.99888 0.97318 0.94353 1.20916 0.93476 0.99778 0.99001 1.20774 0.94137 0.99557 0.92822 1.98335 1.90091 1.69847 1.47799 1.20972 0.99152 0.97848 0.94848 1.20996 0.95929 0.98029 0.96660 0.92703 0.93621 0.92366 0.93084 0.93439 0.92934 0.91063 0.94153 0.92754 0.91469 0.92599 0.78146 0.93442 0.85435 0.85605 0.85570 0.85120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 7.68 37.16 0.29 -1.56 16 2 C -0.07 -0.93 0.80 -154.51 -0.12 -1.05 16 3 C -0.14 -1.71 8.41 37.16 0.31 -1.40 16 4 C -0.15 -2.01 7.06 37.16 0.26 -1.75 16 5 C -0.12 -2.05 4.08 -26.73 -0.11 -2.16 16 6 C 0.21 3.87 2.23 -69.08 -0.15 3.71 16 7 H 0.06 1.13 5.84 -51.93 -0.30 0.83 16 8 N -0.72 -17.13 5.11 -54.55 -0.28 -17.41 16 9 C -0.24 -6.38 9.89 -15.06 -0.15 -6.53 16 10 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 12 N -0.93 -27.53 13.07 55.49 0.73 -26.81 16 13 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 C -0.04 -0.69 2.66 -104.62 -0.28 -0.97 16 18 C -0.11 -1.56 7.63 -39.59 -0.30 -1.87 16 19 C -0.11 -1.53 9.81 -39.55 -0.39 -1.92 16 20 C -0.05 -0.64 6.32 -39.50 -0.25 -0.89 16 21 Cl -0.09 -1.12 28.96 -51.86 -1.50 -2.62 16 22 C -0.11 -1.55 9.83 -39.55 -0.39 -1.94 16 23 C -0.10 -1.52 6.94 -39.59 -0.27 -1.79 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.77 6.50 -51.93 -0.34 0.43 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.96 4.05 -51.93 -0.21 0.75 16 31 H 0.04 0.49 8.04 -51.93 -0.42 0.07 16 32 H 0.05 0.73 6.53 -51.93 -0.34 0.40 16 33 H 0.07 1.26 8.12 -51.93 -0.42 0.83 16 34 H 0.06 0.95 6.86 -51.93 -0.36 0.59 16 35 H 0.38 9.89 7.47 -40.82 -0.30 9.59 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.13 1.71 7.95 -52.48 -0.42 1.30 16 38 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.13 2.06 7.31 -52.49 -0.38 1.68 16 LS Contribution 328.48 15.07 4.95 4.95 Total: -1.00 -28.23 328.48 -8.78 -37.01 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.00 Total: 8.48 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -1.65 Total: -20.50 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.45 Total: -44.22 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.50 Total: -2.62 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.23 -8.78 -37.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179706674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.083 kcal (2) G-P(sol) polarization free energy of solvation -28.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds