Wall clock time and date at job start Tue Mar 31 2020 05:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46904 * 2 1 4 4 C 1.53003 * 109.46861 * 240.00508 * 2 1 3 5 5 C 1.53000 * 109.47319 * 120.00415 * 2 1 3 6 6 C 1.53006 * 109.47068 * 66.59814 * 5 2 1 7 7 H 1.08998 * 109.46725 * 49.56914 * 6 5 2 8 8 N 1.46492 * 109.46909 * 169.56550 * 6 5 2 9 9 C 1.36936 * 120.00363 * 261.02735 * 8 6 5 10 10 H 1.08003 * 119.99856 * 3.39910 * 9 8 6 11 11 C 1.38814 * 120.00189 * 183.40448 * 9 8 6 12 12 N 1.31615 * 119.99901 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99837 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47090 * 90.00292 * 13 11 9 15 15 H 1.48504 * 109.47309 * 210.00245 * 13 11 9 16 16 H 1.48503 * 109.47261 * 330.00178 * 13 11 9 17 17 C 1.50698 * 109.47350 * 289.57025 * 6 5 2 18 18 C 1.38237 * 119.98919 * 122.45543 * 17 6 5 19 19 C 1.38212 * 120.01436 * 179.97438 * 18 17 6 20 20 C 1.38356 * 119.98831 * 0.02562 * 19 18 17 21 21 Cl 1.73592 * 120.01355 * 180.02562 * 20 19 18 22 22 C 1.38352 * 119.97033 * 0.28593 * 20 19 18 23 23 C 1.38212 * 119.98411 * 359.39461 * 22 20 19 24 24 H 1.09008 * 109.46711 * 288.16321 * 1 2 3 25 25 H 1.09003 * 109.47002 * 48.15914 * 1 2 3 26 26 H 1.09000 * 109.47429 * 168.16570 * 1 2 3 27 27 H 1.09005 * 109.46754 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47697 * 300.00220 * 3 2 1 29 29 H 1.08997 * 109.47160 * 60.00910 * 3 2 1 30 30 H 1.09000 * 109.46676 * 309.19466 * 4 2 1 31 31 H 1.08995 * 109.47171 * 69.18902 * 4 2 1 32 32 H 1.08993 * 109.47013 * 189.19619 * 4 2 1 33 33 H 1.08997 * 109.46732 * 306.60563 * 5 2 1 34 34 H 1.08997 * 109.47304 * 186.59799 * 5 2 1 35 35 H 0.97002 * 120.00025 * 81.03167 * 8 6 5 36 36 H 0.96998 * 120.00030 * 179.97438 * 12 11 9 37 37 H 1.08002 * 119.99632 * 0.02562 * 18 17 6 38 38 H 1.08004 * 120.00844 * 180.02562 * 19 18 17 39 39 H 1.08001 * 120.00679 * 179.72004 * 22 20 19 40 40 H 1.08007 * 119.99134 * 180.32300 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.6700 -2.2038 1.1689 7 1 1.9663 -2.6001 0.1978 8 7 2.3647 -2.9386 2.2288 9 6 3.5146 -3.6258 1.9450 10 1 3.9394 -3.5815 0.9530 11 6 4.1343 -4.3797 2.9323 12 7 5.2392 -5.0407 2.6593 13 14 3.4000 -4.4559 4.6482 14 1 2.4460 -5.5911 4.7283 15 1 4.4853 -4.6504 5.6429 16 1 2.6849 -3.1870 4.9375 17 6 0.1811 -2.3599 1.3422 18 6 -0.5671 -2.9829 0.3609 19 6 -1.9325 -3.1269 0.5196 20 6 -2.5506 -2.6468 1.6605 21 17 -4.2654 -2.8279 1.8607 22 6 -1.8021 -2.0176 2.6393 23 6 -0.4358 -1.8802 2.4825 24 1 -0.3633 0.3204 0.9765 25 1 -0.3633 0.6855 -0.7656 26 1 -0.3634 -1.0058 -0.2108 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.5488 -1.6904 -1.3353 31 1 1.8169 -0.1213 -2.1316 32 1 3.1175 -0.8656 -1.1711 33 1 1.5835 -0.2803 2.1352 34 1 3.1237 -0.6202 1.3102 35 1 2.0102 -2.9383 3.1317 36 1 5.6725 -5.5671 3.3492 37 1 -0.0846 -3.3581 -0.5295 38 1 -2.5170 -3.6141 -0.2470 39 1 -2.2847 -1.6387 3.5281 40 1 0.1493 -1.3936 3.2490 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179706685.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:15 Heat of formation + Delta-G solvation = 15.768106 kcal Electronic energy + Delta-G solvation = -20564.196153 eV Core-core repulsion = 17597.514681 eV Total energy + Delta-G solvation = -2966.681472 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.95976 -37.51512 -36.25189 -34.70493 -32.01323 -30.98033 -30.12572 -27.84132 -27.05642 -26.85533 -24.06641 -22.90970 -22.21463 -20.24440 -18.33234 -17.96571 -16.85184 -15.53145 -15.19934 -14.70206 -14.34668 -14.17354 -14.11932 -13.59356 -13.43989 -13.30673 -12.94299 -12.62393 -12.51730 -12.01178 -11.77877 -11.68770 -11.48983 -11.32797 -11.29984 -11.12362 -10.91019 -10.73816 -10.65137 -10.32360 -10.30362 -10.10536 -9.95800 -9.65157 -8.99112 -8.81858 -8.23457 -7.34867 -5.82924 -3.18475 1.34146 1.45142 2.21684 3.33656 3.37609 3.42605 3.81185 4.54267 4.86502 5.00399 5.01874 5.07478 5.13701 5.18870 5.45599 5.50824 5.54516 5.62238 5.75050 5.79507 5.86023 5.91256 5.94047 5.99480 6.07536 6.10363 6.18973 6.24388 6.30287 6.36062 6.40125 6.44905 6.51441 6.61562 6.70860 6.84249 6.95357 7.03851 7.92634 8.35660 9.13341 9.85838 10.04765 11.34929 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.006777 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.195818 B = 4130.729318 C = 5681.867630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.066 4.066 3 C -0.138 4.138 4 C -0.142 4.142 5 C -0.124 4.124 6 C 0.211 3.789 7 H 0.080 0.920 8 N -0.740 5.740 9 C -0.245 4.245 10 H 0.092 0.908 11 C 0.009 3.991 12 N -0.930 5.930 13 Si 0.881 3.119 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.277 1.277 17 C -0.050 4.050 18 C -0.103 4.103 19 C -0.111 4.111 20 C -0.047 4.047 21 Cl -0.088 7.088 22 C -0.109 4.109 23 C -0.106 4.106 24 H 0.050 0.950 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.362 0.638 36 H 0.260 0.740 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.338 9.596 -4.795 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.067 4.067 3 C -0.196 4.196 4 C -0.199 4.199 5 C -0.165 4.165 6 C 0.102 3.898 7 H 0.097 0.903 8 N -0.381 5.381 9 C -0.375 4.375 10 H 0.110 0.890 11 C -0.187 4.187 12 N -0.577 5.577 13 Si 0.712 3.288 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.204 1.204 17 C -0.051 4.051 18 C -0.122 4.122 19 C -0.130 4.130 20 C -0.074 4.074 21 Cl -0.059 7.059 22 C -0.128 4.128 23 C -0.125 4.125 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.195 0.805 36 H 0.070 0.930 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.241 9.435 -4.879 17.766 hybrid contribution -0.609 -0.139 1.428 1.559 sum -14.850 9.296 -3.451 17.856 Atomic orbital electron populations 1.22343 0.95119 1.02630 1.00899 1.20503 0.95293 0.94938 0.95974 1.21865 1.00934 0.95870 1.00886 1.21932 1.01514 1.00007 0.96434 1.22420 1.01675 0.96522 0.95844 1.19403 0.84890 0.91324 0.94224 0.90253 1.42824 1.28359 1.60568 1.06367 1.19082 0.98606 1.21123 0.98659 0.89007 1.24656 0.97336 0.99038 0.97719 1.69691 1.19749 1.34964 1.33331 0.86603 0.78458 0.77842 0.85933 1.21015 1.21681 1.20353 1.20693 0.97727 0.93748 0.92980 1.20991 0.92687 0.98881 0.99667 1.20960 0.94982 1.00465 0.96543 1.20786 0.84091 1.04801 0.97725 1.98339 1.13426 1.96658 1.97473 1.20964 0.93976 0.99534 0.98300 1.20966 0.93327 1.00167 0.98054 0.93065 0.93947 0.90976 0.92780 0.93324 0.93147 0.92394 0.93496 0.92351 0.92796 0.90971 0.80536 0.92972 0.85174 0.85452 0.85578 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 7.14 37.16 0.27 -1.64 16 2 C -0.07 -0.87 0.80 -154.50 -0.12 -1.00 16 3 C -0.14 -1.65 8.43 37.16 0.31 -1.34 16 4 C -0.14 -1.84 7.66 37.16 0.28 -1.55 16 5 C -0.12 -1.97 4.16 -26.73 -0.11 -2.09 16 6 C 0.21 3.74 2.38 -69.08 -0.16 3.58 16 7 H 0.08 1.46 5.48 -51.93 -0.28 1.17 16 8 N -0.74 -16.58 4.80 -54.55 -0.26 -16.85 16 9 C -0.25 -6.60 10.39 -15.06 -0.16 -6.76 16 10 H 0.09 2.64 8.01 -52.48 -0.42 2.22 16 11 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 12 N -0.93 -28.55 13.97 55.49 0.78 -27.77 16 13 Si 0.88 21.80 27.77 -169.99 -4.72 17.08 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 16 H -0.28 -6.42 6.47 56.52 0.37 -6.05 16 17 C -0.05 -0.77 2.77 -104.62 -0.29 -1.06 16 18 C -0.10 -1.45 7.47 -39.59 -0.30 -1.75 16 19 C -0.11 -1.44 9.83 -39.55 -0.39 -1.82 16 20 C -0.05 -0.63 6.32 -39.50 -0.25 -0.88 16 21 Cl -0.09 -1.05 28.96 -51.86 -1.50 -2.55 16 22 C -0.11 -1.46 9.83 -39.55 -0.39 -1.85 16 23 C -0.11 -1.56 7.68 -39.59 -0.30 -1.87 16 24 H 0.05 0.65 7.29 -51.92 -0.38 0.27 16 25 H 0.04 0.49 8.09 -51.93 -0.42 0.06 16 26 H 0.07 0.92 3.93 -51.93 -0.20 0.72 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.75 6.55 -51.93 -0.34 0.41 16 31 H 0.05 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 33 H 0.05 0.83 6.85 -51.93 -0.36 0.48 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.36 8.11 5.41 -40.82 -0.22 7.89 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.13 1.67 7.95 -52.49 -0.42 1.26 16 38 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 39 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.13 1.83 7.39 -52.48 -0.39 1.45 16 LS Contribution 326.74 15.07 4.92 4.92 Total: -1.00 -29.08 326.74 -8.47 -37.54 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.98 Total: 7.49 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -1.70 Total: -19.86 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.51 Total: -44.62 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.72 Total: 17.08 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.50 Total: -2.55 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.08 -8.47 -37.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179706685.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.313 kcal (2) G-P(sol) polarization free energy of solvation -29.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds