Wall clock time and date at job start Tue Mar 31 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47040 * 2 1 4 4 C 1.53003 * 109.47359 * 119.99679 * 2 1 3 5 5 C 1.53003 * 109.46679 * 65.00113 * 4 2 1 6 6 C 1.53003 * 109.47056 * 180.02562 * 5 4 2 7 7 H 1.09010 * 109.46839 * 305.00102 * 6 5 4 8 8 N 1.46497 * 109.47568 * 64.99650 * 6 5 4 9 9 C 1.36944 * 119.99699 * 54.89786 * 8 6 5 10 10 H 1.08000 * 119.99513 * 5.54309 * 9 8 6 11 11 C 1.38802 * 120.00025 * 185.53582 * 9 8 6 12 12 N 1.31623 * 120.00139 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00116 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46730 * 90.00375 * 13 11 9 15 15 H 1.48497 * 109.47288 * 210.00141 * 13 11 9 16 16 H 1.48496 * 109.47162 * 330.00537 * 13 11 9 17 17 C 1.50696 * 109.47290 * 185.00241 * 6 5 4 18 18 C 1.38239 * 119.98714 * 28.02782 * 17 6 5 19 19 C 1.38216 * 120.01418 * 179.97438 * 18 17 6 20 20 C 1.38349 * 119.98439 * 0.02562 * 19 18 17 21 21 Cl 1.73607 * 120.01151 * 180.02562 * 20 19 18 22 22 C 1.38351 * 119.97545 * 0.28091 * 20 19 18 23 23 C 1.38217 * 119.98771 * 359.39730 * 22 20 19 24 24 H 1.08997 * 109.47485 * 60.00137 * 1 2 3 25 25 H 1.09004 * 109.46974 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47165 * 299.99731 * 1 2 3 27 27 H 1.08995 * 109.47409 * 239.99890 * 2 1 3 28 28 H 1.09001 * 109.46636 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46928 * 299.99695 * 3 2 1 30 30 H 1.09000 * 109.46922 * 60.00120 * 3 2 1 31 31 H 1.08999 * 109.47179 * 305.00777 * 4 2 1 32 32 H 1.08998 * 109.47610 * 185.00234 * 4 2 1 33 33 H 1.09002 * 109.47254 * 60.00346 * 5 4 2 34 34 H 1.08995 * 109.47321 * 299.99852 * 5 4 2 35 35 H 0.96999 * 120.00663 * 234.90342 * 8 6 5 36 36 H 0.97001 * 119.99928 * 179.97438 * 12 11 9 37 37 H 1.07997 * 119.99440 * 359.97438 * 18 17 6 38 38 H 1.08005 * 120.00893 * 180.02562 * 19 18 17 39 39 H 1.08009 * 120.00648 * 179.72648 * 22 20 19 40 40 H 1.07991 * 119.99888 * 180.32451 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1880 6 6 2.1447 -2.9166 2.4376 7 1 3.2200 -2.7646 2.5317 8 7 1.4701 -2.3783 3.6213 9 6 0.1021 -2.3612 3.6812 10 1 -0.4785 -2.8248 2.8974 11 6 -0.5383 -1.7482 4.7493 12 7 0.1694 -1.1829 5.7043 13 14 -2.4044 -1.7254 4.8313 14 1 -2.8825 -2.9294 5.5574 15 1 -2.8535 -0.5046 5.5476 16 1 -2.9604 -1.7243 3.4544 17 6 1.8541 -4.3906 2.3205 18 6 1.7741 -4.9821 1.0736 19 6 1.5081 -6.3342 0.9656 20 6 1.3214 -7.0953 2.1057 21 17 0.9880 -8.7937 1.9709 22 6 1.3953 -6.5015 3.3531 23 6 1.6680 -5.1507 3.4601 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2953 33 1 2.0699 -2.6550 0.3003 34 1 0.5490 -2.2724 1.1421 35 1 1.9923 -2.0340 4.3627 36 1 -0.2781 -0.7541 6.4506 37 1 1.9194 -4.3878 0.1837 38 1 1.4460 -6.7963 -0.0086 39 1 1.2453 -7.0944 4.2433 40 1 1.7309 -4.6881 4.4339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180024902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:20 Heat of formation + Delta-G solvation = 3.907923 kcal Electronic energy + Delta-G solvation = -20074.598120 eV Core-core repulsion = 17107.402352 eV Total energy + Delta-G solvation = -2967.195768 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.18818 -37.00669 -36.11966 -34.76391 -32.22283 -30.70838 -29.54810 -29.10475 -26.83023 -25.33199 -23.68089 -22.30990 -21.68285 -19.61866 -19.39893 -17.24821 -16.77169 -15.32244 -14.94105 -14.75961 -14.38734 -14.02770 -13.78572 -13.61038 -13.08666 -13.04818 -12.94005 -12.67399 -12.42123 -11.88478 -11.45805 -11.33750 -11.16741 -11.11646 -11.01511 -10.86668 -10.75830 -10.59328 -10.40014 -10.23303 -10.05311 -9.98843 -9.71598 -9.58921 -8.95556 -8.57031 -8.05053 -7.02593 -5.80341 -3.10208 1.62319 1.77185 2.42393 3.41051 3.47929 3.48364 4.12174 4.57305 5.12806 5.17087 5.25746 5.29026 5.34575 5.44365 5.63413 5.69018 5.75106 5.90223 5.91954 5.95198 6.02841 6.06219 6.16451 6.18671 6.20714 6.31508 6.37602 6.43411 6.53773 6.56509 6.62368 6.68135 6.68889 6.86821 7.08503 7.16267 7.22703 7.34279 7.72476 8.37654 9.49919 10.02659 10.38871 11.41612 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012361 B = 0.005995 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.662411 B = 4669.084821 C = 6134.738571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.105 4.105 5 C -0.123 4.123 6 C 0.205 3.795 7 H 0.067 0.933 8 N -0.714 5.714 9 C -0.227 4.227 10 H 0.069 0.931 11 C -0.008 4.008 12 N -0.931 5.931 13 Si 0.896 3.104 14 H -0.291 1.291 15 H -0.292 1.292 16 H -0.282 1.282 17 C -0.070 4.070 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.048 4.048 21 Cl -0.095 7.095 22 C -0.119 4.119 23 C -0.069 4.069 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.386 0.614 36 H 0.254 0.746 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.017 -4.818 -10.185 12.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.142 4.142 5 C -0.162 4.162 6 C 0.094 3.906 7 H 0.085 0.915 8 N -0.353 5.353 9 C -0.358 4.358 10 H 0.087 0.913 11 C -0.204 4.204 12 N -0.579 5.579 13 Si 0.728 3.272 14 H -0.218 1.218 15 H -0.219 1.219 16 H -0.208 1.208 17 C -0.073 4.073 18 C -0.136 4.136 19 C -0.140 4.140 20 C -0.074 4.074 21 Cl -0.066 7.066 22 C -0.138 4.138 23 C -0.087 4.087 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.219 0.781 36 H 0.064 0.936 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.795 -4.927 -10.197 12.298 hybrid contribution -1.146 -0.114 0.345 1.202 sum 3.649 -5.042 -9.852 11.654 Atomic orbital electron populations 1.21842 0.95418 1.01994 1.00982 1.21098 0.95936 0.95581 0.98636 1.21833 1.00411 0.96751 1.01275 1.21515 0.99208 0.95568 0.97958 1.22055 1.02292 0.95156 0.96694 1.19221 0.95319 0.86806 0.89217 0.91506 1.42364 1.03920 1.72850 1.16192 1.19045 0.82593 1.28928 1.05268 0.91339 1.24671 0.97256 1.00727 0.97735 1.69649 1.33859 1.42266 1.12156 0.86349 0.86375 0.77019 0.77478 1.21820 1.21871 1.20757 1.21222 0.95378 0.98564 0.92164 1.21134 1.00861 0.93516 0.98044 1.20889 1.02135 0.94160 0.96842 1.20825 1.07060 0.84062 0.95455 1.98323 1.94172 1.15668 1.98483 1.21055 1.01475 0.95696 0.95535 1.21126 0.95896 0.91443 1.00281 0.94004 0.92390 0.92340 0.92356 0.93205 0.93525 0.92616 0.90008 0.93521 0.93619 0.91008 0.78066 0.93583 0.85399 0.86038 0.85850 0.84250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.95 37.15 0.33 -1.82 16 2 C -0.09 -1.32 2.92 -90.62 -0.26 -1.58 16 3 C -0.15 -1.85 9.19 37.16 0.34 -1.51 16 4 C -0.10 -1.69 4.57 -26.73 -0.12 -1.81 16 5 C -0.12 -2.02 3.72 -26.73 -0.10 -2.12 16 6 C 0.21 3.67 3.10 -69.08 -0.21 3.46 16 7 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 8 N -0.71 -15.74 3.79 -54.55 -0.21 -15.94 16 9 C -0.23 -5.69 8.37 -15.06 -0.13 -5.81 16 10 H 0.07 1.75 7.11 -52.49 -0.37 1.38 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 12 N -0.93 -26.47 13.07 55.49 0.73 -25.75 16 13 Si 0.90 21.83 29.55 -169.99 -5.02 16.81 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 C -0.07 -1.22 5.21 -104.62 -0.54 -1.77 16 18 C -0.12 -1.79 9.13 -39.59 -0.36 -2.15 16 19 C -0.12 -1.79 9.83 -39.55 -0.39 -2.18 16 20 C -0.05 -0.74 6.32 -39.50 -0.25 -0.99 16 21 Cl -0.10 -1.32 28.96 -51.86 -1.50 -2.82 16 22 C -0.12 -1.95 9.83 -39.55 -0.39 -2.34 16 23 C -0.07 -1.25 8.98 -39.59 -0.36 -1.60 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.61 7.75 -51.93 -0.40 1.20 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.65 6.22 -51.93 -0.32 0.32 16 34 H 0.07 1.34 5.36 -51.93 -0.28 1.06 16 35 H 0.39 9.21 8.04 -40.82 -0.33 8.88 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 37 H 0.13 1.71 6.00 -52.49 -0.31 1.39 16 38 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 40 H 0.14 2.74 7.46 -52.49 -0.39 2.35 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -26.48 336.39 -9.59 -36.07 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.12 Total: 9.09 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -2.54 Total: -22.53 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.52 Total: -41.69 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.50 Total: -2.82 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -26.48 -9.59 -36.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180024902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.982 kcal (2) G-P(sol) polarization free energy of solvation -26.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds