Wall clock time and date at job start Tue Mar 31 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42105 * 109.46696 * 2 1 4 4 C 1.81405 * 103.00033 * 116.38587 * 2 1 3 5 5 C 1.53005 * 109.47062 * 180.02562 * 4 2 1 6 6 H 1.08995 * 109.46920 * 54.80090 * 5 4 2 7 7 N 1.46896 * 109.46878 * 294.79938 * 5 4 2 8 8 C 1.46904 * 111.00023 * 157.47987 * 7 5 4 9 9 C 1.52992 * 109.47457 * 185.18604 * 8 7 5 10 10 C 1.50696 * 109.47343 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00269 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00400 * 179.97438 * 10 9 8 13 13 N 1.31505 * 120.00465 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 119.99565 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47336 * 90.00041 * 14 12 10 16 16 H 1.48499 * 109.46751 * 209.99966 * 14 12 10 17 17 H 1.48496 * 109.47339 * 329.99528 * 14 12 10 18 18 C 1.50695 * 109.46986 * 174.80245 * 5 4 2 19 19 C 1.38234 * 120.00251 * 79.72112 * 18 5 4 20 20 C 1.38234 * 119.99941 * 179.80532 * 19 18 5 21 21 C 1.38239 * 120.00136 * 0.40711 * 20 19 18 22 22 C 1.38243 * 119.99767 * 359.85262 * 21 20 19 23 23 C 1.38234 * 119.99905 * 359.95541 * 22 21 20 24 24 H 1.08997 * 109.46844 * 303.60986 * 1 2 3 25 25 H 1.09000 * 109.47135 * 63.61159 * 1 2 3 26 26 H 1.09005 * 109.46754 * 183.61431 * 1 2 3 27 27 H 1.09001 * 109.46971 * 60.00231 * 4 2 1 28 28 H 1.08996 * 109.47216 * 299.99958 * 4 2 1 29 29 H 1.00901 * 111.00172 * 281.43461 * 7 5 4 30 30 H 1.09007 * 109.46726 * 305.18479 * 8 7 5 31 31 H 1.08997 * 109.46831 * 65.18073 * 8 7 5 32 32 H 1.09002 * 109.47131 * 300.00154 * 9 8 7 33 33 H 1.09007 * 109.47349 * 59.99908 * 9 8 7 34 34 H 0.97000 * 120.00543 * 179.97438 * 13 12 10 35 35 H 1.07996 * 119.99867 * 0.02562 * 19 18 5 36 36 H 1.07994 * 120.00312 * 180.23432 * 20 19 18 37 37 H 1.07994 * 120.00427 * 179.83287 * 21 20 19 38 38 H 1.08003 * 119.99648 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.99900 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2221 -0.7855 1.5834 5 6 3.7424 -0.8616 1.7382 6 1 4.1698 0.1342 1.6209 7 7 4.2949 -1.7555 0.7118 8 6 5.7132 -1.4622 0.4663 9 6 6.2183 -2.3214 -0.6945 10 6 7.6731 -2.0200 -0.9467 11 1 8.1861 -1.2884 -0.3401 12 6 8.3494 -2.6781 -1.9519 13 7 9.6188 -2.4148 -2.1724 14 14 7.4620 -3.9431 -3.0017 15 1 6.8624 -3.2728 -4.1834 16 1 8.4283 -4.9753 -3.4555 17 1 6.3899 -4.5867 -2.2008 18 6 4.0820 -1.3962 3.1055 19 6 4.0181 -2.7550 3.3519 20 6 4.3335 -3.2457 4.6051 21 6 4.7047 -2.3770 5.6143 22 6 4.7633 -1.0177 5.3694 23 6 4.4518 -0.5273 4.1151 24 1 -0.3633 0.5688 0.8559 25 1 -0.3633 0.4567 -0.9206 26 1 -0.3633 -1.0257 0.0648 27 1 1.8032 -1.7915 1.6085 28 1 1.8032 -0.1970 2.3996 29 1 4.1646 -2.7231 0.9668 30 1 5.8279 -0.4078 0.2146 31 1 6.2911 -1.6866 1.3628 32 1 6.1037 -3.3757 -0.4428 33 1 5.6404 -2.0969 -1.5911 34 1 10.0947 -2.8781 -2.8794 35 1 3.7253 -3.4333 2.5643 36 1 4.2873 -4.3076 4.7966 37 1 4.9485 -2.7601 6.5942 38 1 5.0529 -0.3390 6.1581 39 1 4.4980 0.5346 3.9237 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183097033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:45 Heat of formation + Delta-G solvation = -16.573777 kcal Electronic energy + Delta-G solvation = -19583.892864 eV Core-core repulsion = 16617.852649 eV Total energy + Delta-G solvation = -2966.040215 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.64030 -36.54858 -35.58054 -33.46029 -31.78145 -30.93928 -29.70771 -29.09881 -28.35131 -24.22271 -23.46395 -22.44367 -20.50702 -20.31314 -17.52384 -17.15278 -16.77390 -15.76928 -15.40378 -15.06688 -14.73718 -14.55163 -14.39038 -14.11750 -13.66738 -13.38645 -13.38056 -13.12700 -12.81823 -12.60802 -12.49290 -12.34357 -11.85566 -11.48542 -11.37433 -11.31041 -10.98771 -10.87559 -10.29729 -10.06840 -9.76587 -9.75916 -9.20001 -8.95158 -8.75889 -8.50332 -8.23483 -7.97484 -6.00524 -3.98964 1.27526 1.37069 1.62128 2.74836 3.35560 3.42274 3.45599 3.73711 3.87275 4.43352 4.49078 4.73143 4.85182 4.93079 5.02179 5.04930 5.08232 5.15927 5.21101 5.34091 5.45158 5.49818 5.68615 5.78667 5.82058 5.94798 6.00641 6.18569 6.30513 6.42177 6.46621 6.53213 6.79519 6.96556 7.07721 7.39089 7.52108 7.70209 7.87880 8.56928 9.04108 9.61377 11.12977 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011365 B = 0.005682 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.112367 B = 4926.657913 C = 6652.639673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.506 4.506 2 S 1.280 4.720 3 O -0.853 6.853 4 C -0.430 4.430 5 C 0.143 3.857 6 H 0.090 0.910 7 N -0.685 5.685 8 C 0.071 3.929 9 C -0.008 4.008 10 C -0.521 4.521 11 H 0.070 0.930 12 C 0.066 3.934 13 N -0.905 5.905 14 Si 0.882 3.118 15 H -0.276 1.276 16 H -0.290 1.290 17 H -0.264 1.264 18 C -0.098 4.098 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.126 4.126 22 C -0.119 4.119 23 C -0.115 4.115 24 H 0.072 0.928 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.341 0.659 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.014 0.986 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.236 -1.851 10.881 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 1.477 4.523 3 O -0.848 6.848 4 C -0.567 4.567 5 C 0.032 3.968 6 H 0.108 0.892 7 N -0.316 5.316 8 C -0.057 4.057 9 C -0.046 4.046 10 C -0.559 4.559 11 H 0.088 0.912 12 C -0.135 4.135 13 N -0.544 5.544 14 Si 0.710 3.290 15 H -0.201 1.201 16 H -0.217 1.217 17 H -0.188 1.188 18 C -0.101 4.101 19 C -0.132 4.132 20 C -0.134 4.134 21 C -0.144 4.144 22 C -0.137 4.137 23 C -0.133 4.133 24 H 0.092 0.908 25 H 0.120 0.880 26 H 0.128 0.872 27 H 0.136 0.864 28 H 0.102 0.898 29 H 0.161 0.839 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.715 -1.135 9.511 20.139 hybrid contribution -0.712 0.085 2.134 2.252 sum -18.426 -1.049 11.646 21.823 Atomic orbital electron populations 1.27828 1.24254 1.07525 1.06600 1.71531 0.84005 0.97854 0.98950 1.93077 1.73300 1.37056 1.81378 1.27660 1.01070 1.10337 1.17629 1.20115 0.91772 0.98308 0.86631 0.89171 1.60885 1.20164 1.07915 1.42670 1.22035 0.83940 1.01038 0.98706 1.19532 0.96601 0.94766 0.93696 1.21070 0.93589 1.23919 1.17370 0.91219 1.25012 0.94704 0.96744 0.96999 1.69916 1.09195 1.42896 1.32372 0.86735 0.79717 0.81574 0.81002 1.20140 1.21669 1.18825 1.20671 0.98728 0.94029 0.96707 1.20959 1.00258 0.94852 0.97122 1.21114 0.99393 0.99630 0.93284 1.21128 1.00551 0.93590 0.99179 1.21128 1.00061 0.95613 0.96906 1.21088 0.99589 0.99607 0.93042 0.90833 0.87961 0.87225 0.86384 0.89780 0.83920 0.91537 0.95505 0.96730 0.95770 0.92771 0.85728 0.86073 0.86327 0.86279 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 -4.29 10.74 101.05 1.09 -3.21 16 2 S 1.28 14.26 13.54 -107.50 -1.46 12.81 16 3 O -0.85 -15.24 18.14 -35.23 -0.64 -15.88 16 4 C -0.43 -4.55 5.56 37.16 0.21 -4.34 16 5 C 0.14 1.94 2.21 -68.87 -0.15 1.78 16 6 H 0.09 1.41 7.62 -51.93 -0.40 1.01 16 7 N -0.69 -10.10 5.90 -107.96 -0.64 -10.73 16 8 C 0.07 1.37 5.43 -3.83 -0.02 1.35 16 9 C -0.01 -0.19 4.34 -27.89 -0.12 -0.31 16 10 C -0.52 -14.74 9.66 -34.44 -0.33 -15.08 16 11 H 0.07 2.14 7.99 -52.49 -0.42 1.73 16 12 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 13 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 14 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 18 C -0.10 -1.30 4.66 -104.63 -0.49 -1.79 16 19 C -0.11 -1.37 9.14 -39.58 -0.36 -1.73 16 20 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 21 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 22 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 23 C -0.11 -1.49 9.67 -39.58 -0.38 -1.87 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 26 H 0.11 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.12 0.93 8.14 -51.92 -0.42 0.51 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.34 4.48 6.48 -39.29 -0.25 4.23 16 30 H 0.07 1.36 7.94 -51.93 -0.41 0.95 16 31 H 0.03 0.54 8.01 -51.93 -0.42 0.13 16 32 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 33 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.12 1.30 6.52 -52.49 -0.34 0.96 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 39 H 0.12 1.47 8.04 -52.48 -0.42 1.04 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -35.61 337.34 -9.38 -44.99 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.98 Total: 2.90 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: -1.86 Total: -28.66 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.14 Total: -37.90 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.64 Total: -15.88 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 16 Polarization: 14.26 SS G_CDS: -1.46 Total: 12.81 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.61 -9.38 -44.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183097033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.417 kcal (2) G-P(sol) polarization free energy of solvation -35.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds