Wall clock time and date at job start Tue Mar 31 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42105 * 109.46696 * 2 1 4 4 C 1.81405 * 103.00033 * 116.38587 * 2 1 3 5 5 C 1.53005 * 109.47062 * 180.02562 * 4 2 1 6 6 H 1.08995 * 109.46920 * 54.80090 * 5 4 2 7 7 N 1.46896 * 109.46878 * 294.79938 * 5 4 2 8 8 C 1.46904 * 111.00023 * 157.47987 * 7 5 4 9 9 C 1.52992 * 109.47457 * 185.18604 * 8 7 5 10 10 C 1.50696 * 109.47343 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00269 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00400 * 179.97438 * 10 9 8 13 13 N 1.31505 * 120.00465 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 119.99565 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47336 * 90.00041 * 14 12 10 16 16 H 1.48499 * 109.46751 * 209.99966 * 14 12 10 17 17 H 1.48496 * 109.47339 * 329.99528 * 14 12 10 18 18 C 1.50695 * 109.46986 * 174.80245 * 5 4 2 19 19 C 1.38234 * 120.00251 * 79.72112 * 18 5 4 20 20 C 1.38234 * 119.99941 * 179.80532 * 19 18 5 21 21 C 1.38239 * 120.00136 * 0.40711 * 20 19 18 22 22 C 1.38243 * 119.99767 * 359.85262 * 21 20 19 23 23 C 1.38234 * 119.99905 * 359.95541 * 22 21 20 24 24 H 1.08997 * 109.46844 * 303.60986 * 1 2 3 25 25 H 1.09000 * 109.47135 * 63.61159 * 1 2 3 26 26 H 1.09005 * 109.46754 * 183.61431 * 1 2 3 27 27 H 1.09001 * 109.46971 * 60.00231 * 4 2 1 28 28 H 1.08996 * 109.47216 * 299.99958 * 4 2 1 29 29 H 1.00901 * 111.00172 * 281.43461 * 7 5 4 30 30 H 1.09007 * 109.46726 * 305.18479 * 8 7 5 31 31 H 1.08997 * 109.46831 * 65.18073 * 8 7 5 32 32 H 1.09002 * 109.47131 * 300.00154 * 9 8 7 33 33 H 1.09007 * 109.47349 * 59.99908 * 9 8 7 34 34 H 0.97000 * 120.00543 * 179.97438 * 13 12 10 35 35 H 1.07996 * 119.99867 * 0.02562 * 19 18 5 36 36 H 1.07994 * 120.00312 * 180.23432 * 20 19 18 37 37 H 1.07994 * 120.00427 * 179.83287 * 21 20 19 38 38 H 1.08003 * 119.99648 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.99900 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2221 -0.7855 1.5834 5 6 3.7424 -0.8616 1.7382 6 1 4.1698 0.1342 1.6209 7 7 4.2949 -1.7555 0.7118 8 6 5.7132 -1.4622 0.4663 9 6 6.2183 -2.3214 -0.6945 10 6 7.6731 -2.0200 -0.9467 11 1 8.1861 -1.2884 -0.3401 12 6 8.3494 -2.6781 -1.9519 13 7 9.6188 -2.4148 -2.1724 14 14 7.4620 -3.9431 -3.0017 15 1 6.8624 -3.2728 -4.1834 16 1 8.4283 -4.9753 -3.4555 17 1 6.3899 -4.5867 -2.2008 18 6 4.0820 -1.3962 3.1055 19 6 4.0181 -2.7550 3.3519 20 6 4.3335 -3.2457 4.6051 21 6 4.7047 -2.3770 5.6143 22 6 4.7633 -1.0177 5.3694 23 6 4.4518 -0.5273 4.1151 24 1 -0.3633 0.5688 0.8559 25 1 -0.3633 0.4567 -0.9206 26 1 -0.3633 -1.0257 0.0648 27 1 1.8032 -1.7915 1.6085 28 1 1.8032 -0.1970 2.3996 29 1 4.1646 -2.7231 0.9668 30 1 5.8279 -0.4078 0.2146 31 1 6.2911 -1.6866 1.3628 32 1 6.1037 -3.3757 -0.4428 33 1 5.6404 -2.0969 -1.5911 34 1 10.0947 -2.8781 -2.8794 35 1 3.7253 -3.4333 2.5643 36 1 4.2873 -4.3076 4.7966 37 1 4.9485 -2.7601 6.5942 38 1 5.0529 -0.3390 6.1581 39 1 4.4980 0.5346 3.9237 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183097033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:44 Heat of formation + Delta-G solvation = -42.448191 kcal Electronic energy + Delta-G solvation = -19585.014862 eV Core-core repulsion = 16617.852649 eV Total energy + Delta-G solvation = -2967.162214 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.60777 -37.75165 -36.72549 -35.30168 -33.47931 -31.86215 -30.81616 -30.17928 -29.44282 -25.92915 -24.51366 -23.44777 -22.14111 -21.49467 -18.89718 -18.51512 -18.09734 -16.75370 -16.54289 -16.27533 -15.96458 -15.82922 -15.51235 -15.35712 -14.98890 -14.58061 -14.41933 -14.25414 -14.19570 -13.81649 -13.45318 -13.36995 -13.19715 -12.91561 -12.83733 -12.39427 -12.24179 -11.94688 -11.83430 -11.68505 -11.53457 -11.34004 -11.11550 -10.69357 -9.86191 -9.72987 -9.45644 -8.96486 -8.22495 -6.27933 0.36115 0.46302 0.74197 1.46625 1.49175 1.61477 1.92003 2.45723 2.82627 2.94017 3.14020 3.23072 3.74252 3.92448 4.02943 4.15116 4.19531 4.27355 4.33092 4.49311 4.52654 4.58150 4.59156 4.66584 4.73269 4.96964 5.03248 5.05416 5.11356 5.17595 5.31187 5.52947 5.56215 5.58934 5.61764 5.71914 6.04248 6.08546 6.31913 6.57015 6.81263 7.36907 8.94770 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011365 B = 0.005682 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.112367 B = 4926.657913 C = 6652.639673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.491 4.491 2 S 1.287 4.713 3 O -0.932 6.932 4 C -0.417 4.417 5 C 0.146 3.854 6 H 0.057 0.943 7 N -0.668 5.668 8 C 0.087 3.913 9 C -0.002 4.002 10 C -0.536 4.536 11 H 0.020 0.980 12 C 0.000 4.000 13 N -0.958 5.958 14 Si 0.959 3.041 15 H -0.265 1.265 16 H -0.290 1.290 17 H -0.231 1.231 18 C -0.115 4.115 19 C -0.122 4.122 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.127 4.127 23 C -0.139 4.139 24 H 0.067 0.933 25 H 0.108 0.892 26 H 0.148 0.852 27 H 0.157 0.843 28 H 0.084 0.916 29 H 0.356 0.644 30 H 0.043 0.957 31 H 0.011 0.989 32 H 0.031 0.969 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.135 0.865 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.369 -4.967 11.229 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 1.488 4.512 3 O -0.927 6.927 4 C -0.555 4.555 5 C 0.034 3.966 6 H 0.075 0.925 7 N -0.301 5.301 8 C -0.042 4.042 9 C -0.040 4.040 10 C -0.575 4.575 11 H 0.039 0.961 12 C -0.196 4.196 13 N -0.599 5.599 14 Si 0.781 3.219 15 H -0.190 1.190 16 H -0.216 1.216 17 H -0.154 1.154 18 C -0.117 4.117 19 C -0.140 4.140 20 C -0.138 4.138 21 C -0.148 4.148 22 C -0.145 4.145 23 C -0.158 4.158 24 H 0.086 0.914 25 H 0.127 0.873 26 H 0.166 0.834 27 H 0.175 0.825 28 H 0.103 0.897 29 H 0.178 0.822 30 H 0.062 0.938 31 H 0.030 0.970 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.153 0.847 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.855 -4.236 9.881 23.463 hybrid contribution 0.253 1.089 2.158 2.430 sum -20.602 -3.147 12.038 24.068 Atomic orbital electron populations 1.27675 1.20418 1.10106 1.06775 1.70524 0.85869 0.95721 0.99063 1.92983 1.76412 1.40117 1.83221 1.27520 0.98827 1.12323 1.16816 1.20010 0.93463 0.96324 0.86789 0.92482 1.60739 1.16642 1.09070 1.43647 1.21609 0.86617 0.99050 0.96892 1.19427 0.93160 0.96078 0.95305 1.21454 0.96412 1.22813 1.16785 0.96132 1.26121 0.95457 0.99426 0.98614 1.70097 1.11471 1.44770 1.33556 0.85535 0.78988 0.78227 0.79145 1.19032 1.21640 1.15372 1.20668 0.99925 0.94910 0.96238 1.21218 1.00211 0.94333 0.98235 1.21494 0.98369 1.01053 0.92854 1.21502 0.99638 0.93214 1.00454 1.21392 0.99763 0.96645 0.96733 1.21231 1.00866 0.99572 0.94157 0.91371 0.87307 0.83357 0.82499 0.89735 0.82231 0.93804 0.97020 0.95058 0.94700 0.92608 0.83783 0.83499 0.83844 0.84690 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -6.82 10.74 113.37 1.22 -5.60 16 2 S 1.29 27.43 13.54 -56.49 -0.76 26.67 16 3 O -0.93 -34.65 18.14 -148.98 -2.70 -37.36 16 4 C -0.42 -8.04 5.56 71.98 0.40 -7.64 16 5 C 0.15 3.88 2.21 44.17 0.10 3.98 16 6 H 0.06 1.91 7.62 -2.39 -0.02 1.89 16 7 N -0.67 -18.81 5.90 -495.46 -2.93 -21.73 16 8 C 0.09 3.44 5.43 86.30 0.47 3.91 16 9 C 0.00 -0.09 4.34 29.84 0.13 0.04 16 10 C -0.54 -31.21 9.66 25.60 0.25 -30.96 16 11 H 0.02 1.34 7.99 -2.91 -0.02 1.32 16 12 C 0.00 -0.01 5.47 84.66 0.46 0.45 16 13 N -0.96 -60.99 13.96 21.45 0.30 -60.69 16 14 Si 0.96 43.05 27.47 68.60 1.88 44.94 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 16 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 17 H -0.23 -9.11 6.54 99.48 0.65 -8.46 16 18 C -0.11 -2.94 4.66 -19.87 -0.09 -3.03 16 19 C -0.12 -2.63 9.14 22.27 0.20 -2.43 16 20 C -0.12 -2.35 10.05 22.27 0.22 -2.12 16 21 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 22 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 23 C -0.14 -3.68 9.67 22.27 0.22 -3.46 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.16 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 29 H 0.36 8.25 6.48 -89.69 -0.58 7.67 16 30 H 0.04 1.90 7.94 -2.38 -0.02 1.88 16 31 H 0.01 0.48 8.01 -2.39 -0.02 0.46 16 32 H 0.03 1.31 7.20 -2.39 -0.02 1.30 16 33 H 0.03 1.51 7.57 -2.38 -0.02 1.49 16 34 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 35 H 0.14 2.44 6.52 -2.91 -0.02 2.42 16 36 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 39 H 0.11 2.95 8.04 -2.91 -0.02 2.93 16 Total: -1.00 -81.98 337.34 0.20 -81.78 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.39 Total: 18.25 kcal Atomic # 6 Polarization: -55.88 SS G_CDS: 4.02 Total: -51.85 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -2.63 Total: -82.43 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -2.70 Total: -37.36 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.94 kcal Atomic # 16 Polarization: 27.43 SS G_CDS: -0.76 Total: 26.67 kcal Total: -81.98 0.20 -81.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183097033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.333 kcal (2) G-P(sol) polarization free energy of solvation -81.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds