Wall clock time and date at job start Tue Mar 31 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47232 * 2 1 4 4 C 1.53005 * 109.47078 * 120.00196 * 2 1 3 5 5 H 1.08999 * 109.47095 * 185.97083 * 4 2 1 6 6 N 1.46903 * 109.47244 * 65.96538 * 4 2 1 7 7 C 1.46906 * 110.99683 * 82.15684 * 6 4 2 8 8 C 1.52994 * 109.46971 * 184.95869 * 7 6 4 9 9 C 1.50705 * 109.46990 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99664 * 0.02562 * 9 8 7 11 11 C 1.37871 * 119.99927 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00216 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00112 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47060 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47266 * 119.99613 * 13 11 9 16 16 H 1.48496 * 109.47391 * 240.00162 * 13 11 9 17 17 C 1.50705 * 109.46986 * 305.96792 * 4 2 1 18 18 C 1.38233 * 120.00472 * 99.99790 * 17 4 2 19 19 C 1.38221 * 120.01506 * 180.02562 * 18 17 4 20 20 C 1.38261 * 120.02283 * 0.02562 * 19 18 17 21 21 C 1.38196 * 120.01359 * 359.97438 * 20 19 18 22 22 C 1.38325 * 120.00493 * 279.72877 * 17 4 2 23 23 Cl 1.73594 * 120.01634 * 359.97419 * 22 17 4 24 24 H 1.09003 * 109.46906 * 300.00214 * 1 2 3 25 25 H 1.08998 * 109.46974 * 59.99863 * 1 2 3 26 26 H 1.08995 * 109.47398 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46906 * 239.99786 * 2 1 3 28 28 H 1.09005 * 109.47067 * 174.53077 * 3 2 1 29 29 H 1.08997 * 109.47532 * 294.53382 * 3 2 1 30 30 H 1.09000 * 109.47293 * 54.53681 * 3 2 1 31 31 H 1.00898 * 111.00326 * 206.10999 * 6 4 2 32 32 H 1.09000 * 109.47039 * 304.96008 * 7 6 4 33 33 H 1.08999 * 109.46942 * 64.95492 * 7 6 4 34 34 H 1.09000 * 109.47353 * 299.99947 * 8 7 6 35 35 H 1.09002 * 109.47342 * 60.00474 * 8 7 6 36 36 H 0.96998 * 120.00038 * 179.97438 * 12 11 9 37 37 H 1.07999 * 119.99621 * 0.02562 * 18 17 4 38 38 H 1.07994 * 119.99189 * 179.97438 * 19 18 17 39 39 H 1.07996 * 119.99374 * 179.97438 * 20 19 18 40 40 H 1.08005 * 120.00517 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1248 -0.6297 1.3043 6 7 1.6714 -2.1416 1.1794 7 6 2.6265 -2.8934 0.3543 8 6 2.1439 -4.3373 0.2034 9 6 3.1234 -5.1084 -0.6436 10 1 4.0023 -4.6176 -1.0347 11 6 2.8973 -6.4402 -0.9192 12 7 1.8273 -7.0380 -0.4424 13 14 4.1117 -7.3961 -1.9684 14 1 5.2244 -6.5015 -2.3770 15 1 4.6549 -8.5343 -1.1843 16 1 3.4218 -7.9126 -3.1777 17 6 1.4207 -0.1013 2.4753 18 6 0.3407 -0.7098 3.0871 19 6 -0.2279 -0.1410 4.2113 20 6 0.2829 1.0369 4.7242 21 6 1.3626 1.6461 4.1135 22 6 1.9363 1.0737 2.9919 23 17 3.2974 1.8342 2.2286 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1257 1.4439 0.0980 29 1 1.7589 1.9273 -0.9348 30 1 1.5990 1.9837 0.8370 31 1 1.5978 -2.5420 2.1027 32 1 2.6999 -2.4301 -0.6296 33 1 3.6055 -2.8855 0.8335 34 1 2.0705 -4.8006 1.1873 35 1 1.1650 -4.3451 -0.2759 36 1 1.6681 -7.9749 -0.6366 37 1 -0.0590 -1.6297 2.6866 38 1 -1.0719 -0.6165 4.6887 39 1 -0.1620 1.4811 5.6024 40 1 1.7617 2.5661 4.5145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183703569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:09 Heat of formation + Delta-G solvation = 11.801041 kcal Electronic energy + Delta-G solvation = -20034.099665 eV Core-core repulsion = 17067.246168 eV Total energy + Delta-G solvation = -2966.853497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.05104 -37.05297 -36.55644 -34.17580 -32.56901 -31.16272 -30.74880 -28.85646 -26.97528 -25.42262 -23.67596 -22.49289 -22.11442 -20.50336 -19.14116 -17.14854 -16.35172 -15.69241 -15.60526 -15.41515 -14.85633 -14.42114 -14.09579 -13.82822 -13.51016 -13.33071 -12.83508 -12.59816 -12.48680 -12.17213 -11.95388 -11.55316 -11.46660 -11.23270 -11.19569 -10.95518 -10.93122 -10.73271 -10.48135 -10.23078 -9.98116 -9.87966 -9.39868 -9.12060 -8.91210 -8.64195 -8.34452 -7.83710 -5.99092 -4.01273 1.08394 1.20976 2.09068 3.31776 3.39270 3.43355 3.56324 4.39893 4.54700 4.64269 4.82497 4.93711 5.12622 5.22537 5.29610 5.37264 5.37437 5.56683 5.61353 5.71939 5.87889 5.89865 5.99259 6.11384 6.13799 6.19888 6.29037 6.33345 6.36543 6.40264 6.49783 6.59592 6.70255 6.75559 7.00865 7.47105 7.73073 7.80786 7.95238 8.09012 8.44697 9.06260 9.62630 11.12357 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023444 B = 0.004041 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.064793 B = 6926.505701 C = 7356.352304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.077 4.077 3 C -0.156 4.156 4 C 0.125 3.875 5 H 0.054 0.946 6 N -0.683 5.683 7 C 0.066 3.934 8 C 0.028 3.972 9 C -0.520 4.520 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.061 4.061 18 C -0.094 4.094 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.115 4.115 22 C -0.035 4.035 23 Cl -0.067 7.067 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.337 0.663 32 H 0.060 0.940 33 H 0.015 0.985 34 H 0.013 0.987 35 H 0.025 0.975 36 H 0.259 0.741 37 H 0.146 0.854 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.953 18.970 8.857 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.096 4.096 3 C -0.213 4.213 4 C 0.015 3.985 5 H 0.072 0.928 6 N -0.314 5.314 7 C -0.062 4.062 8 C -0.010 4.010 9 C -0.559 4.559 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.062 4.062 18 C -0.112 4.112 19 C -0.134 4.134 20 C -0.136 4.136 21 C -0.134 4.134 22 C -0.062 4.062 23 Cl -0.038 7.038 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.155 0.845 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.164 0.836 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.353 18.951 8.270 20.947 hybrid contribution 1.540 -0.564 -0.015 1.641 sum -1.812 18.386 8.255 20.236 Atomic orbital electron populations 1.21742 0.94775 1.02714 1.00190 1.21016 0.96676 0.94823 0.97071 1.22544 1.01086 0.96416 1.01284 1.20545 0.96964 0.89740 0.91221 0.92821 1.60712 1.52127 1.00099 1.18505 1.22207 0.91494 0.96862 0.95618 1.19040 0.97108 0.87878 0.96951 1.21220 1.07858 0.95157 1.31677 0.92764 1.24985 0.95431 0.97783 0.96094 1.69980 1.26569 1.11371 1.45344 0.86556 0.81336 0.79975 0.80247 1.19778 1.21058 1.20985 1.19888 0.96110 0.93642 0.96581 1.21233 0.94638 1.00588 0.94788 1.21297 1.00036 0.95770 0.96288 1.21070 0.96375 0.96064 1.00091 1.20980 0.96980 1.00519 0.94894 1.20793 0.92919 0.95894 0.96579 1.98355 1.44298 1.81089 1.80092 0.93521 0.93838 0.91028 0.90501 0.92308 0.93560 0.92220 0.84474 0.92183 0.96622 0.96859 0.95620 0.93085 0.83613 0.85466 0.85512 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.51 37.16 0.32 -1.56 16 2 C -0.08 -1.10 2.80 -90.62 -0.25 -1.35 16 3 C -0.16 -1.96 7.21 37.15 0.27 -1.69 16 4 C 0.13 1.86 1.82 -68.86 -0.13 1.74 16 5 H 0.05 0.85 7.10 -51.93 -0.37 0.49 16 6 N -0.68 -11.69 5.00 -107.94 -0.54 -12.23 16 7 C 0.07 1.37 5.41 -3.82 -0.02 1.35 16 8 C 0.03 0.71 5.27 -27.88 -0.15 0.57 16 9 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 10 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 13 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 17 C -0.06 -0.80 3.70 -104.59 -0.39 -1.19 16 18 C -0.09 -1.15 7.92 -39.59 -0.31 -1.46 16 19 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 20 C -0.12 -1.11 10.05 -39.59 -0.40 -1.50 16 21 C -0.11 -1.19 9.83 -39.55 -0.39 -1.58 16 22 C -0.03 -0.42 5.25 -39.50 -0.21 -0.63 16 23 Cl -0.07 -0.80 22.29 -51.86 -1.16 -1.95 16 24 H 0.05 0.61 6.56 -51.93 -0.34 0.27 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 1.09 7.78 -51.93 -0.40 0.69 16 27 H 0.08 1.21 7.09 -51.93 -0.37 0.85 16 28 H 0.06 0.74 6.19 -51.93 -0.32 0.42 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.74 5.34 -51.93 -0.28 0.46 16 31 H 0.34 5.59 7.21 -39.29 -0.28 5.31 16 32 H 0.06 1.26 7.07 -51.93 -0.37 0.89 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.15 1.85 6.76 -52.49 -0.35 1.49 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 325.85 15.07 4.91 4.91 Total: -1.00 -29.50 325.85 -9.54 -39.05 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.01 Total: 2.01 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -2.47 Total: -22.36 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.20 Total: -38.35 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.16 Total: -1.95 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.50 -9.54 -39.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183703569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.849 kcal (2) G-P(sol) polarization free energy of solvation -29.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds