Wall clock time and date at job start Tue Mar 31 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47232 * 2 1 4 4 C 1.53005 * 109.47078 * 120.00196 * 2 1 3 5 5 H 1.08999 * 109.47095 * 185.97083 * 4 2 1 6 6 N 1.46903 * 109.47244 * 65.96538 * 4 2 1 7 7 C 1.46906 * 110.99683 * 82.15684 * 6 4 2 8 8 C 1.52994 * 109.46971 * 184.95869 * 7 6 4 9 9 C 1.50705 * 109.46990 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99664 * 0.02562 * 9 8 7 11 11 C 1.37871 * 119.99927 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00216 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00112 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47060 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47266 * 119.99613 * 13 11 9 16 16 H 1.48496 * 109.47391 * 240.00162 * 13 11 9 17 17 C 1.50705 * 109.46986 * 305.96792 * 4 2 1 18 18 C 1.38233 * 120.00472 * 99.99790 * 17 4 2 19 19 C 1.38221 * 120.01506 * 180.02562 * 18 17 4 20 20 C 1.38261 * 120.02283 * 0.02562 * 19 18 17 21 21 C 1.38196 * 120.01359 * 359.97438 * 20 19 18 22 22 C 1.38325 * 120.00493 * 279.72877 * 17 4 2 23 23 Cl 1.73594 * 120.01634 * 359.97419 * 22 17 4 24 24 H 1.09003 * 109.46906 * 300.00214 * 1 2 3 25 25 H 1.08998 * 109.46974 * 59.99863 * 1 2 3 26 26 H 1.08995 * 109.47398 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46906 * 239.99786 * 2 1 3 28 28 H 1.09005 * 109.47067 * 174.53077 * 3 2 1 29 29 H 1.08997 * 109.47532 * 294.53382 * 3 2 1 30 30 H 1.09000 * 109.47293 * 54.53681 * 3 2 1 31 31 H 1.00898 * 111.00326 * 206.10999 * 6 4 2 32 32 H 1.09000 * 109.47039 * 304.96008 * 7 6 4 33 33 H 1.08999 * 109.46942 * 64.95492 * 7 6 4 34 34 H 1.09000 * 109.47353 * 299.99947 * 8 7 6 35 35 H 1.09002 * 109.47342 * 60.00474 * 8 7 6 36 36 H 0.96998 * 120.00038 * 179.97438 * 12 11 9 37 37 H 1.07999 * 119.99621 * 0.02562 * 18 17 4 38 38 H 1.07994 * 119.99189 * 179.97438 * 19 18 17 39 39 H 1.07996 * 119.99374 * 179.97438 * 20 19 18 40 40 H 1.08005 * 120.00517 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1248 -0.6297 1.3043 6 7 1.6714 -2.1416 1.1794 7 6 2.6265 -2.8934 0.3543 8 6 2.1439 -4.3373 0.2034 9 6 3.1234 -5.1084 -0.6436 10 1 4.0023 -4.6176 -1.0347 11 6 2.8973 -6.4402 -0.9192 12 7 1.8273 -7.0380 -0.4424 13 14 4.1117 -7.3961 -1.9684 14 1 5.2244 -6.5015 -2.3770 15 1 4.6549 -8.5343 -1.1843 16 1 3.4218 -7.9126 -3.1777 17 6 1.4207 -0.1013 2.4753 18 6 0.3407 -0.7098 3.0871 19 6 -0.2279 -0.1410 4.2113 20 6 0.2829 1.0369 4.7242 21 6 1.3626 1.6461 4.1135 22 6 1.9363 1.0737 2.9919 23 17 3.2974 1.8342 2.2286 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1257 1.4439 0.0980 29 1 1.7589 1.9273 -0.9348 30 1 1.5990 1.9837 0.8370 31 1 1.5978 -2.5420 2.1027 32 1 2.6999 -2.4301 -0.6296 33 1 3.6055 -2.8855 0.8335 34 1 2.0705 -4.8006 1.1873 35 1 1.1650 -4.3451 -0.2759 36 1 1.6681 -7.9749 -0.6366 37 1 -0.0590 -1.6297 2.6866 38 1 -1.0719 -0.6165 4.6887 39 1 -0.1620 1.4811 5.6024 40 1 1.7617 2.5661 4.5145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183703569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:08 Heat of formation + Delta-G solvation = -3.783326 kcal Electronic energy + Delta-G solvation = -20034.775454 eV Core-core repulsion = 17067.246168 eV Total energy + Delta-G solvation = -2967.529286 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.03261 -38.21570 -37.46023 -35.89245 -34.39120 -32.33011 -31.60340 -30.54659 -28.05878 -26.96891 -25.25848 -23.54647 -23.11501 -22.23476 -20.28159 -18.51261 -18.08788 -16.89641 -16.69749 -16.57235 -16.35919 -15.88644 -15.12450 -15.07578 -14.82702 -14.51343 -14.29914 -13.93265 -13.64177 -13.50016 -13.23627 -13.13829 -12.83927 -12.58906 -12.39305 -12.37931 -12.22091 -12.10057 -11.90723 -11.80801 -11.37869 -11.29000 -11.14682 -10.91939 -10.56126 -9.79144 -9.56075 -9.28234 -8.20092 -6.30996 0.22526 0.35584 1.19738 1.40003 1.40298 1.53513 2.40381 2.71408 3.13596 3.21108 3.59370 3.95972 4.03088 4.15521 4.17482 4.36037 4.44814 4.45663 4.54436 4.59883 4.67359 4.76440 4.84799 4.85340 5.03095 5.05579 5.10723 5.13034 5.26642 5.32172 5.39840 5.46684 5.48746 5.54122 5.55746 5.69321 5.80540 5.92262 6.14175 6.27312 6.50747 6.86110 7.38159 8.92161 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023444 B = 0.004041 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.064793 B = 6926.505701 C = 7356.352304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.079 4.079 3 C -0.147 4.147 4 C 0.130 3.870 5 H 0.043 0.957 6 N -0.680 5.680 7 C 0.086 3.914 8 C 0.037 3.963 9 C -0.544 4.544 10 H 0.057 0.943 11 C 0.003 3.997 12 N -0.930 5.930 13 Si 0.964 3.036 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.277 1.277 17 C -0.077 4.077 18 C -0.108 4.108 19 C -0.114 4.114 20 C -0.108 4.108 21 C -0.115 4.115 22 C -0.046 4.046 23 Cl -0.070 7.070 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.339 0.661 32 H 0.057 0.943 33 H 0.014 0.986 34 H -0.009 1.009 35 H -0.003 1.003 36 H 0.264 0.736 37 H 0.133 0.867 38 H 0.150 0.850 39 H 0.161 0.839 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.743 20.426 9.674 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.098 4.098 3 C -0.204 4.204 4 C 0.021 3.979 5 H 0.061 0.939 6 N -0.312 5.312 7 C -0.043 4.043 8 C -0.001 4.001 9 C -0.582 4.582 10 H 0.075 0.925 11 C -0.195 4.195 12 N -0.570 5.570 13 Si 0.789 3.211 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.078 4.078 18 C -0.126 4.126 19 C -0.132 4.132 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.073 4.073 23 Cl -0.041 7.041 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.158 0.842 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.010 0.990 35 H 0.015 0.985 36 H 0.072 0.928 37 H 0.151 0.849 38 H 0.167 0.833 39 H 0.178 0.822 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.143 20.426 9.092 22.578 hybrid contribution 1.410 -0.981 -0.191 1.728 sum -1.733 19.445 8.901 21.456 Atomic orbital electron populations 1.21643 0.94300 1.01571 1.01028 1.21022 0.97061 0.95781 0.95904 1.22464 1.00935 0.95033 1.02013 1.20479 0.96544 0.88021 0.92885 0.93915 1.60601 1.50907 1.01372 1.18315 1.21788 0.91794 0.94386 0.96294 1.18861 0.95447 0.90749 0.94996 1.21633 1.08414 0.95977 1.32204 0.92455 1.25919 0.97328 0.98890 0.97331 1.70106 1.28423 1.11910 1.46579 0.85415 0.78937 0.78407 0.78376 1.18762 1.20292 1.20292 1.19695 0.97111 0.94642 0.96398 1.21213 0.94952 1.00534 0.95944 1.21577 1.00305 0.96002 0.95322 1.21472 0.95442 0.95235 1.00466 1.21304 0.96901 1.01114 0.93983 1.20909 0.93158 0.95823 0.97387 1.98351 1.44466 1.80991 1.80302 0.92758 0.92813 0.93130 0.92549 0.92440 0.92601 0.91671 0.84189 0.92436 0.96818 0.99029 0.98486 0.92754 0.84920 0.83258 0.82179 0.83212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 8.51 71.98 0.61 -2.90 16 2 C -0.08 -2.26 2.80 -10.79 -0.03 -2.29 16 3 C -0.15 -3.57 7.21 71.98 0.52 -3.05 16 4 C 0.13 3.93 1.82 44.17 0.08 4.01 16 5 H 0.04 1.38 7.10 -2.39 -0.02 1.37 16 6 N -0.68 -24.20 5.00 -495.43 -2.48 -26.68 16 7 C 0.09 3.71 5.41 86.30 0.47 4.18 16 8 C 0.04 1.99 5.27 29.85 0.16 2.14 16 9 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 10 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 11 C 0.00 0.20 5.46 84.65 0.46 0.66 16 12 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 13 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 14 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 C -0.08 -1.99 3.70 -19.84 -0.07 -2.06 16 18 C -0.11 -2.56 7.92 22.26 0.18 -2.39 16 19 C -0.11 -2.05 10.05 22.27 0.22 -1.83 16 20 C -0.11 -1.65 10.05 22.27 0.22 -1.43 16 21 C -0.11 -2.03 9.83 22.29 0.22 -1.82 16 22 C -0.05 -1.04 5.25 22.32 0.12 -0.93 16 23 Cl -0.07 -1.57 22.29 -2.72 -0.06 -1.63 16 24 H 0.05 1.39 6.56 -2.39 -0.02 1.37 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.58 7.78 -2.39 -0.02 1.56 16 27 H 0.06 1.83 7.09 -2.39 -0.02 1.81 16 28 H 0.06 1.41 6.19 -2.38 -0.01 1.39 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.52 5.34 -2.39 -0.01 1.50 16 31 H 0.34 11.75 7.21 -89.70 -0.65 11.11 16 32 H 0.06 2.49 7.07 -2.39 -0.02 2.47 16 33 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 34 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.13 3.44 6.76 -2.91 -0.02 3.42 16 38 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -64.14 325.85 3.54 -60.59 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.38 Total: 16.59 kcal Atomic # 6 Polarization: -42.30 SS G_CDS: 3.39 Total: -38.91 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -2.19 Total: -83.39 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.06 Total: -1.63 kcal Total: -64.14 3.54 -60.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183703569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.810 kcal (2) G-P(sol) polarization free energy of solvation -64.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds