Wall clock time and date at job start Tue Mar 31 2020 05:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46840 * 64.99638 * 4 3 2 6 6 C 1.46504 * 120.00381 * 269.99975 * 5 4 3 7 7 C 1.50704 * 109.46773 * 90.00257 * 6 5 4 8 8 H 1.07998 * 119.99721 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99850 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99639 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99704 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47527 * 89.99985 * 11 9 7 13 13 H 1.48503 * 109.46701 * 209.99660 * 11 9 7 14 14 H 1.48497 * 109.47342 * 329.99388 * 11 9 7 15 15 C 1.38368 * 119.99897 * 90.00348 * 5 4 3 16 16 C 1.39927 * 119.99475 * 4.72659 * 15 5 4 17 17 N 1.31429 * 120.01935 * 179.71093 * 16 15 5 18 18 C 1.33321 * 120.00184 * 0.56046 * 17 16 15 19 19 C 1.47699 * 120.00321 * 179.72965 * 18 17 16 20 20 O 1.21478 * 120.00204 * 179.97438 * 19 18 17 21 21 O 1.34728 * 119.99904 * 359.97438 * 19 18 17 22 22 C 1.39457 * 119.99538 * 359.71052 * 18 17 16 23 23 N 1.32046 * 119.97859 * 0.02562 * 22 18 17 24 24 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 25 25 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 26 26 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 28 28 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 29 29 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 30 30 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 31 31 H 1.08992 * 109.47334 * 209.99920 * 6 5 4 32 32 H 1.08994 * 109.46680 * 330.00544 * 6 5 4 33 33 H 0.96999 * 119.99319 * 179.97438 * 10 9 7 34 34 H 1.08001 * 119.98743 * 359.97438 * 16 15 5 35 35 H 0.96703 * 117.00127 * 179.97438 * 21 19 18 36 36 H 1.07991 * 120.01117 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2508 6 6 4.1064 -0.8924 -1.3403 7 6 2.7998 -1.4857 -1.8007 8 1 1.9573 -0.8422 -2.0065 9 6 2.6801 -2.8502 -1.9591 10 7 1.5397 -3.3679 -2.3604 11 14 4.1372 -3.9632 -1.6024 12 1 4.1073 -4.3763 -0.1763 13 1 4.0638 -5.1675 -2.4682 14 1 5.3990 -3.2308 -1.8792 15 6 4.2709 1.3535 -2.3485 16 6 4.2429 2.7479 -2.2350 17 7 4.5278 3.4982 -3.2758 18 6 4.8328 2.9309 -4.4431 19 6 5.1472 3.7740 -5.6143 20 8 5.4256 3.2571 -6.6777 21 8 5.1254 5.1166 -5.5031 22 6 4.8553 1.5412 -4.5581 23 7 4.5740 0.7878 -3.5108 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.9783 2.1768 0.0902 30 1 3.8508 0.5687 0.8427 31 1 4.8911 -1.1442 -2.0535 32 1 4.3630 -1.2950 -0.3605 33 1 1.4557 -4.3278 -2.4722 34 1 3.9912 3.2077 -1.2907 35 1 5.3385 5.6263 -6.2968 36 1 5.1019 1.0814 -5.5036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230077434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:15 Heat of formation + Delta-G solvation = -60.741903 kcal Electronic energy + Delta-G solvation = -22241.654789 eV Core-core repulsion = 18727.406086 eV Total energy + Delta-G solvation = -3514.248703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.93939 -39.59960 -37.81747 -36.17814 -35.94506 -33.80041 -32.62571 -30.84571 -29.94585 -27.56328 -25.82879 -24.61507 -24.33664 -22.42228 -22.04700 -20.56565 -18.30443 -17.50799 -17.09163 -16.94150 -16.81526 -15.78238 -15.65844 -15.24573 -14.82048 -14.69604 -14.41751 -14.08076 -13.78210 -13.65405 -12.84376 -12.50486 -12.41970 -12.01028 -11.77454 -11.58775 -11.47202 -11.17538 -11.11367 -10.85298 -10.73789 -10.67178 -10.39910 -10.24556 -9.69534 -9.33786 -8.94916 -8.74154 -8.49895 -7.27547 -5.99031 -3.92607 0.83680 1.47435 2.68660 3.01648 3.26470 3.30640 3.38352 3.41157 4.11280 4.25655 4.43147 4.45802 4.65751 4.71704 5.23779 5.26232 5.30642 5.35219 5.44980 5.54017 5.57571 5.75437 5.78528 5.88114 6.04460 6.31703 6.35615 6.50157 6.54177 6.81340 7.25812 7.48881 7.62754 7.71546 7.80171 8.06858 8.25740 8.58181 9.12848 9.60635 11.14655 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.005642 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.745553 B = 4961.892113 C = 5906.491220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.338 6.338 3 C 0.040 3.960 4 C 0.118 3.882 5 N -0.543 5.543 6 C 0.218 3.782 7 C -0.492 4.492 8 H 0.086 0.914 9 C 0.072 3.928 10 N -0.901 5.901 11 Si 0.865 3.135 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.400 3.600 16 C -0.030 4.030 17 N -0.354 5.354 18 C -0.087 4.087 19 C 0.559 3.441 20 O -0.524 6.524 21 O -0.501 6.501 22 C 0.192 3.808 23 N -0.489 5.489 24 H 0.024 0.976 25 H 0.031 0.969 26 H 0.087 0.913 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.027 0.973 33 H 0.261 0.739 34 H 0.167 0.833 35 H 0.406 0.594 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 13.162 3.323 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.255 6.255 3 C -0.039 4.039 4 C -0.005 4.005 5 N -0.245 5.245 6 C 0.098 3.902 7 C -0.530 4.530 8 H 0.104 0.896 9 C -0.129 4.129 10 N -0.541 5.541 11 Si 0.693 3.307 12 H -0.205 1.205 13 H -0.213 1.213 14 H -0.192 1.192 15 C 0.156 3.844 16 C -0.207 4.207 17 N -0.069 5.069 18 C -0.224 4.224 19 C 0.403 3.597 20 O -0.413 6.413 21 O -0.310 6.310 22 C 0.026 3.974 23 N -0.210 5.210 24 H 0.042 0.958 25 H 0.050 0.950 26 H 0.106 0.894 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.184 0.816 35 H 0.263 0.737 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.892 12.266 3.534 13.345 hybrid contribution 0.415 -0.232 -0.340 0.585 sum 4.307 12.034 3.194 13.175 Atomic orbital electron populations 1.22591 0.82320 1.02823 0.97961 1.88420 1.18333 1.24018 1.94764 1.22895 0.94027 0.87439 0.99536 1.21729 0.93300 0.98902 0.86610 1.47039 1.61720 1.08238 1.07467 1.19941 0.99506 0.73510 0.97248 1.21186 0.96261 0.92385 1.43217 0.89573 1.24740 0.95243 0.97664 0.95263 1.69866 1.24404 1.11866 1.47930 0.87039 0.84162 0.81208 0.78317 1.20479 1.21253 1.19196 1.19777 0.87319 0.89229 0.88096 1.23102 1.09139 0.89484 0.98978 1.68036 1.02205 1.38709 0.97942 1.20225 1.17630 0.91949 0.92644 1.20187 0.72437 0.80494 0.86592 1.90884 1.46719 1.74686 1.29001 1.84703 1.82603 1.19281 1.44402 1.23531 0.87225 0.89030 0.97594 1.68490 1.17362 1.37173 0.97969 0.95766 0.95008 0.89439 0.93291 0.93745 0.89372 0.88722 0.93804 0.95475 0.92943 0.81607 0.73674 0.80738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 11.01 101.05 1.11 1.78 16 2 O -0.34 -6.48 7.34 -35.23 -0.26 -6.74 16 3 C 0.04 0.58 6.28 37.16 0.23 0.81 16 4 C 0.12 1.64 5.69 -4.04 -0.02 1.61 16 5 N -0.54 -9.98 2.53 -175.05 -0.44 -10.42 16 6 C 0.22 4.87 4.17 -5.19 -0.02 4.84 16 7 C -0.49 -12.99 8.15 -34.44 -0.28 -13.27 16 8 H 0.09 2.52 6.80 -52.49 -0.36 2.17 16 9 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 10 N -0.90 -26.72 13.96 55.43 0.77 -25.94 16 11 Si 0.87 20.83 27.47 -169.99 -4.67 16.16 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.27 -6.21 6.54 56.52 0.37 -5.85 16 15 C 0.40 7.29 7.36 -155.02 -1.14 6.15 16 16 C -0.03 -0.47 10.42 -17.09 -0.18 -0.65 16 17 N -0.35 -5.80 10.26 -9.45 -0.10 -5.90 16 18 C -0.09 -1.44 6.74 -82.90 -0.56 -2.00 16 19 C 0.56 8.45 8.31 34.60 0.29 8.73 16 20 O -0.52 -8.69 17.12 -19.25 -0.33 -9.02 16 21 O -0.50 -6.06 13.25 -40.57 -0.54 -6.60 16 22 C 0.19 3.35 10.76 -17.01 -0.18 3.17 16 23 N -0.49 -9.75 9.30 -11.94 -0.11 -9.86 16 24 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.88 5.99 -51.93 -0.31 0.57 16 30 H 0.09 1.25 7.89 -51.93 -0.41 0.84 16 31 H 0.04 1.04 6.51 -51.93 -0.34 0.70 16 32 H 0.03 0.59 7.32 -51.93 -0.38 0.21 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 34 H 0.17 1.97 6.03 -52.49 -0.32 1.66 16 35 H 0.41 2.69 9.11 45.56 0.42 3.11 16 36 H 0.18 2.73 7.63 -52.49 -0.40 2.33 16 LS Contribution 312.66 15.07 4.71 4.71 Total: -1.00 -33.83 312.66 -5.19 -39.02 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -3.38 Total: 1.51 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -0.85 Total: 13.08 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.12 Total: -52.13 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -1.13 Total: -22.36 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.83 -5.19 -39.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230077434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.722 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds